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1.
Acta Biotheor ; 68(2): 295, 2020 06.
Article in English | MEDLINE | ID: mdl-32108915

ABSTRACT

The authors have retracted this article [1] because they found a fundamental mistake in the methodology that is not correctable at this time. This mistake is found in the methodology and the derivation of the model with Tukey and Huber's losses. Because of the error, the findings in the article are not reliable. All authors agree to this retraction.

2.
Acta Biotheor ; 67(3): 225-251, 2019 Sep.
Article in English | MEDLINE | ID: mdl-31139975

ABSTRACT

When relating genomic data to survival outcomes, there are three main challenges that are the censored survival outcomes, the high-dimensionality of the genomic data, and the non-normality of data. We propose a method to tackle these challenges simultaneously and obtain a robust estimation of detecting significant genes related to survival outcomes based on Accelerated Failure Time (AFT) model. Specifically, we include a general loss function to the AFT model, adopt model regularization and shrinkage technique, cope with parameters tuning and model selection, and develop an algorithm based on unified Expectation-Maximization approach for easy implementation. Simulation results demonstrate the advantages of the proposed method compared with existing methods when the data has heavy-tailed errors and correlated covariates. Two real case studies on patients are provided to illustrate the application of the proposed method.


Subject(s)
Computational Biology/methods , Ovarian Neoplasms/mortality , Uterine Cervical Neoplasms/mortality , Algorithms , Computer Simulation , Female , Gene Expression Profiling , Humans , Models, Genetic , Ovarian Neoplasms/genetics , Survival Rate , Uterine Cervical Neoplasms/genetics
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