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1.
Genet Mol Res ; 14(2): 6101-9, 2015 Jun 10.
Article in English | MEDLINE | ID: mdl-26125811

ABSTRACT

Plant traits are important indices for regulating and controlling yield ability in soybean varieties. It is important to comprehensively study the quantitative trait locus (QTL) mapping for soybean plant traits, cloning related genes, and marker assistant breeding. In this study, 236 F2 generation plants and a derivative group were constructed by using Jiyu50 and Jinong18, obtained from Jilin Province. A total of 102 simple sequence repeat markers were used to construct a genetic linkage map. With 2 years of molecular and phenotypic data, QTL analyses and mapping were conducted for soybean maturity, plant height, main stem node, main stem branch, seed weight per plant, and more. Five main plant traits were analyzed via inclusive composite interval mapping using QTL IciMapping v2.2. Using one-dimensional scanning, a total of 30 QTLs were detected and distributed across 1 (A1), 4 (C2), and 12 (G). There were 9 linkage groups, including 16 major QTLs. Using two-dimensional scanning, 7 pairs of epistatic QTL interactions for maturity and plant height were detected in the soybean.


Subject(s)
Chromosome Mapping/methods , Glycine max/genetics , Quantitative Trait Loci , Chromosomes, Plant/genetics , DNA, Plant/analysis , Genetic Linkage , Hybridization, Genetic , Microsatellite Repeats
2.
Genet Mol Res ; 14(4): 18895-912, 2015 Dec 29.
Article in English | MEDLINE | ID: mdl-26782540

ABSTRACT

Seed number per pod is an important component of yield traits in soybean (Glycine max L.). In 2010, we identified a natural mutant with an increased number of four-seed pods from a soybean variety named 'Jinong 18' (JN18). Subsequent observations indicated that the trait was stably inherited. To identify and understand the function of genes associated with this mutant trait, we analyzed the genetic differences between the mutant (JN18MT01) and source variety (JN18) by transcriptome sequencing. Three types of tissues, axillary buds, unfertilized ovaries, and young pods at three different growth stages, V6, R1, and R3, were analyzed, respectively. The sequencing results yielded 55,582 expressed genes and 4183 differentially expressed genes (DEGs). Among these, the log2 ratio value of 162 DEGs was >10, and 13 DEGs had overlapping expression at three different growth stages. Comparisons of DEGs among three different growth stages yielded similar results in terms of the percentage of genes classified into each gene ontology (GO) category. DEGs were classified into 25 different functional groups in clusters of orthologous groups analysis. Proportions of the main functional genes differed significantly over developmental stages. A comparison of enriched pathways among the three developmental stages revealed that 646 unigenes were involved in 103 metabolic pathways. These results show that the development of four-seed pods is associated with a complex network involving multiple physiological and metabolic pathways. This study lays the foundation for further research on cloning and on the molecular regulation of genes related to the four-seed pod mutation.


Subject(s)
Fruit/genetics , Gene Expression Regulation, Plant , Glycine max/genetics , Plant Proteins/genetics , Quantitative Trait, Heritable , Seeds/genetics , Transcriptome , Fruit/anatomy & histology , Fruit/growth & development , Gene Expression Profiling , Gene Expression Regulation, Developmental , Gene Ontology , Gene Regulatory Networks , High-Throughput Nucleotide Sequencing , Metabolic Networks and Pathways/genetics , Molecular Sequence Annotation , Mutation , Phenotype , Plant Proteins/metabolism , Seeds/growth & development , Glycine max/anatomy & histology , Glycine max/growth & development
3.
Occup Environ Med ; 60(12): 935-41, 2003 Dec.
Article in English | MEDLINE | ID: mdl-14634185

ABSTRACT

AIMS: To determine chronic effects of long term exposure to cotton dust and endotoxin on incidence of respiratory symptoms and the effect of cessation of exposure. METHODS: Respiratory health in 429 Chinese cotton textile workers (study group) and 449 silk textile workers (control group) was followed prospectively from 1981 to 1996. Byssinosis, chest tightness, and non-specific respiratory symptoms were assessed by means of identical standardised questionnaires at four time points. Exposures to cotton dust and endotoxin were estimated using area samples collected at each survey. Incidence and persistence of symptoms were examined in relation to cumulative exposure and exposure cessation using generalised estimating equations (GEE). RESULTS: Among cotton workers, the cumulative incidence of byssinosis and chest tightness was 24% and 23%, respectively, and was significantly more common in smokers than in non-smokers. A high proportion of symptoms was found to be intermittent, rather than persistent. Among silk workers, no typical byssinosis was identified; the incidence of chest tightness was 10%. Chronic bronchitis, cough, and dyspnoea were more common and persistent in the cotton group than in the silk group. Significantly lower odds ratios for symptoms were observed in cotton workers who left the cotton mills; risk was also related to years since last worked. Multivariate analysis indicated a trend for higher cumulative exposure to endotoxin in relation to a higher risk for byssinosis. CONCLUSION: Chronic exposure to cotton dust is related to both work specific and non-specific respiratory symptoms. Byssinosis is more strongly associated with exposure to endotoxin than to dust. Cessation of exposure may improve the respiratory health of cotton textile workers; the improvement appears to increase with time since last exposure.


Subject(s)
Cotton Fiber , Dust , Occupational Diseases/etiology , Respiratory Tract Diseases/etiology , Textile Industry , Adult , Byssinosis/epidemiology , Byssinosis/etiology , Case-Control Studies , China/epidemiology , Chronic Disease , Endotoxins/adverse effects , Female , Follow-Up Studies , Humans , Incidence , Insect Proteins , Male , Middle Aged , Occupational Diseases/epidemiology , Occupational Exposure/adverse effects , Odds Ratio , Respiratory Tract Diseases/epidemiology , Sex Distribution , Silk , Smoking/adverse effects
4.
Occup Environ Med ; 60(2): 115-21, 2003 Feb.
Article in English | MEDLINE | ID: mdl-12554839

ABSTRACT

AIMS: To examine early adverse pulmonary effects of exposure to cotton dust, and to identify potential risk factors, including atopy for pulmonary responses to cotton dust. METHODS: Spirometry, methacholine challenge testing, and questionnaire; performed among 101 non-smoking newly hired textile workers at baseline (prior to starting work), and at 3, 12, and 18 months after starting work. Concentrations of airborne cotton dust in various work areas were measured at each follow up survey using vertical elutriators. RESULTS: The incidence of non-specific respiratory symptoms was 8% at three months, then diminished afterwards. Substantial acute cross shift drops in FEV(1) at each follow up survey, and longitudinal declines in FVC and FEV(1) after 12 months of exposure were observed. Airway responsiveness to methacholine increased with follow up time, and was more pronounced among atopics. Increasing airway responsiveness was strongly correlated with cross shift drops in FEV(1). In addition, one or more respiratory symptoms at three months was significantly, and pre-existing atopy marginally significantly, associated with cross shift drops in FEV(1) after adjusting for other covariates and confounders. CONCLUSION: Results suggest that non-specific respiratory symptoms, decreasing lung function, and increasing airway responsiveness are early pulmonary responses to cotton dust. In addition, the occurrence of respiratory symptoms and increasing airway responsiveness, as well as atopy, may be important predictors for acute changes in lung function among cotton textile workers.


Subject(s)
Byssinosis/physiopathology , Cotton Fiber , Dust , Adolescent , Adult , Bronchoconstrictor Agents , Byssinosis/blood , Byssinosis/etiology , Cohort Studies , Follow-Up Studies , Forced Expiratory Volume/physiology , Humans , Immunoglobulin E/blood , Longitudinal Studies , Methacholine Chloride , Occupational Exposure/adverse effects , Respiratory Hypersensitivity/complications , Risk Factors , Vital Capacity/physiology
5.
Am J Respir Crit Care Med ; 163(4): 847-53, 2001 Mar.
Article in English | MEDLINE | ID: mdl-11282755

ABSTRACT

To evaluate the chronic effects of exposure to cotton dust, a 15-yr follow-up study in cotton textile workers was performed in Shanghai, China from 1981 to 1996. Testing occurred four times during the 15-yr period. The achieved follow-up rates were 76-88% of the original 447 cotton textile workers, and 70-85% of the original 472 silk textile workers (as a control group). Identical questionnaires, equipment, and methods were used throughout the study. The prevalence of byssinosis increased over time in cotton workers, with 15.3% at the last survey versus 7.6% at the baseline, whereas no byssinosis was found in silk workers. More workers in the cotton group consistently reported symptoms than in the silk group, although symptom reporting varied considerably from survey to survey. Cotton workers had small, but significantly greater, adjusted annual declines in FEV(1) and FVC than did the silk workers. Years worked in cotton mills, high level of exposure to endotoxin, and across-shift drops in FEV(1) were found to be significant determinants for longitudinal change in FEV(1), after controlling for appropriate confounders. Furthermore, there were statistically significant associations between excessive loss of FEV(1) and byssinosis, chest tightness at work, and chronic bronchitis in cotton workers. Workers who consistently (three or four of the surveys) reported byssinosis or chest tightness at work had a significantly greater 15-yr loss of FEV(1). We conclude that long-term exposure to cotton dust is associated with chronic or permanent obstructive impairments. Consistent reporting of respiratory symptoms, including byssinosis and chest tightness at work, is of value to predict the magnitude and severity of chronic impairments in textile workers.


Subject(s)
Gossypium/adverse effects , Insect Proteins/adverse effects , Lung Diseases/etiology , Occupational Exposure/adverse effects , Textile Industry , Adult , Airway Obstruction/epidemiology , Airway Obstruction/etiology , Cohort Studies , Environmental Monitoring , Epidemiological Monitoring , Female , Follow-Up Studies , Humans , Incidence , Longitudinal Studies , Lung Diseases/epidemiology , Male , Middle Aged , Prognosis , Respiratory Function Tests , Respiratory Mechanics , Silk
6.
Zhongguo Yi Liao Qi Xie Za Zhi ; 24(5): 276-8, 2000 Sep.
Article in Chinese | MEDLINE | ID: mdl-12583023

ABSTRACT

This paper discusses the X & gamma rays' identical and similar components in clinical imaging and physical Characters. A research has been made on the possibilities of their Co-character imaging and the economic benefits and significance are also discussed here.


Subject(s)
Gamma Rays , Radiography/methods , Humans , Radiation Dosage
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