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1.
Polymers (Basel) ; 14(3)2022 Jan 28.
Article in English | MEDLINE | ID: mdl-35160539

ABSTRACT

We use atomistic as well as coarse-grained molecular dynamics simulations to study the conformation of a single poly(3-hexylthiopene) chain as a function of temperature. We find that mainly bundle and toroid structures appear with bundles becoming more abundant for decreasing temperatures. We compare an atomistic and a Martini-based coarse-grained model which we find in very good agreement. We further illustrate how the temperature dependence of P3HT can be connected to that of simple Lennard-Jones model polymers in a vacuum. Upon adding solvent (THF) we observe the occurrence of a prominent swelling of the molecular size at a temperature of about 220 K. This swelling is in close agreement with the interpretation of recent spectroscopic experiments which allows us to explain the experimental observations by an increased frequency of bundle structures.

2.
ACS Omega ; 3(1): 1060-1068, 2018 Jan 31.
Article in English | MEDLINE | ID: mdl-31457948

ABSTRACT

Accurate description of solvation structure of a hydrophobic nanomaterial is of immense importance to understand protein folding, molecular recognition, drug binding, and many related phenomena. Moreover, spontaneous pattern formation through self-organization of solvent molecules around a nanoscopic solute is fascinating and useful in making template-directed nanostructures of desired morphologies. Recently, it has been shown using polarizable atomistic models that the hydration shell of a buckminsterfullerene can have atomically resolved ordered structure, in which C60 atomic arrangement is imprinted. In analyzing any peculiar behavior of water, traditionally, emphasis has been placed on the long-ranged and orientation-dependent interactions in it. Here, we show through molecular dynamics simulation that the patterned solvation layer with the imprints of the hydrophobic surface atoms of the buckminsterfullerene can be obtained from a completely different mechanism arising from a spherically symmetric, short-ranged interaction having two characteristic lengthscales. The nature of the pattern can be modified by adjusting solvent density or pressure. Although solute-solvent dispersion interaction is the key to such pattern formation adjacent to the solute surface, the ordering at longer lengthscale is a consequence of mutual influence of short-range correlations among successive layers. The present study thus demonstrates that the formation of such patterned solvation shells around the buckminsterfullerene is not restricted to water, but encompasses a large class of anomalous fluids represented by two-lengthscale potential.

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