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1.
Development ; 150(9)2023 05 01.
Article in English | MEDLINE | ID: mdl-37052186

ABSTRACT

Newly synthesized membrane proteins pass through the secretory pathway, starting at the endoplasmic reticulum and packaged into COPII vesicles, to continue to the Golgi apparatus before reaching their membrane of residence. It is known that cargo receptor proteins form part of the COPII complex and play a role in the recruitment of cargo proteins for their subsequent transport through the secretory pathway. The role of cornichon proteins is conserved from yeast to vertebrates, but it is poorly characterized in plants. Here, we studied the role of the two cornichon homologs in the secretory pathway of the moss Physcomitrium patens. Mutant analyses revealed that cornichon genes regulate different growth processes during the moss life cycle by controlling auxin transport, with CNIH2 functioning as a specific cargo receptor for the auxin efflux carrier PINA, with the C terminus of the receptor regulating the interaction, trafficking and membrane localization of PINA.


Subject(s)
COP-Coated Vesicles , Membrane Transport Proteins , Animals , Protein Transport , COP-Coated Vesicles/metabolism , Membrane Transport Proteins/metabolism , Biological Transport/physiology , Membrane Proteins/metabolism , Carrier Proteins/metabolism , Golgi Apparatus/metabolism , Saccharomyces cerevisiae/metabolism
2.
J Cell Sci ; 136(3)2023 02 01.
Article in English | MEDLINE | ID: mdl-36651113

ABSTRACT

The endoplasmic reticulum (ER) is the start site of the secretory pathway, where newly synthesized secreted and membrane proteins are packaged into COPII vesicles through direct interaction with the COPII coat or aided by specific cargo receptors. Little is known about how post-translational modification events regulate packaging of cargo into COPII vesicles. The Saccharomyces cerevisiae protein Erv14, also known as cornichon, belongs to a conserved family of cargo receptors required for the selection and ER export of transmembrane proteins. In this work, we show the importance of a phosphorylation consensus site (S134) at the C-terminus of Erv14. Mimicking phosphorylation of S134 (S134D) prevents the incorporation of Erv14 into COPII vesicles, delays cell growth, exacerbates growth of sec mutants, modifies ER structure and affects localization of several plasma membrane transporters. In contrast, the dephosphorylated mimic (S134A) had less deleterious effects, but still modifies ER structure and slows cell growth. Our results suggest that a possible cycle of phosphorylation and dephosphorylation is important for the correct functioning of Erv14.


Subject(s)
Saccharomyces cerevisiae Proteins , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism , Membrane Proteins/metabolism , Carrier Proteins/metabolism , Membrane Transport Proteins/metabolism , Biological Transport , COP-Coated Vesicles/metabolism , Protein Transport
3.
Plant Physiol ; 191(1): 199-218, 2023 01 02.
Article in English | MEDLINE | ID: mdl-36383186

ABSTRACT

The regulation of root Plasma membrane (PM) Intrinsic Protein (PIP)-type aquaporins (AQPs) is potentially important for salinity tolerance. However, the molecular and cellular details underlying this process in halophytes remain unclear. Using free-flow electrophoresis and label-free proteomics, we report that the increased abundance of PIPs at the PM of the halophyte ice plant (Mesembryanthemum crystallinum L.) roots under salinity conditions is regulated by clathrin-coated vesicles (CCV). To understand this regulation, we analyzed several components of the M. crystallinum CCV complexes: clathrin light chain (McCLC) and subunits µ1 and µ2 of the adaptor protein (AP) complex (McAP1µ and McAP2µ). Co-localization analyses revealed the association between McPIP1;4 and McAP2µ and between McPIP2;1 and McAP1µ, observations corroborated by mbSUS assays, suggesting that AQP abundance at the PM is under the control of CCV. The ability of McPIP1;4 and McPIP2;1 to form homo- and hetero-oligomers was tested and confirmed, as well as their activity as water channels. Also, we found increased phosphorylation of McPIP2;1 only at the PM in response to salt stress. Our results indicate root PIPs from halophytes might be regulated through CCV trafficking and phosphorylation, impacting their localization, transport activity, and abundance under salinity conditions.


Subject(s)
Aquaporins , Mesembryanthemum , Clathrin-Coated Vesicles , Mesembryanthemum/genetics , Ice , Cell Membrane/metabolism , Membrane Proteins/metabolism , Salt Stress , Salt-Tolerant Plants/metabolism , Aquaporins/genetics , Aquaporins/metabolism , Plant Roots/genetics , Plant Roots/metabolism
4.
PeerJ ; 10: e12761, 2022.
Article in English | MEDLINE | ID: mdl-35228904

ABSTRACT

High levels of within-individual variation (WIV) in reiterative components in plants such as leaves, flowers, and fruits have been shown to increase individual fitness by multiple mechanisms including mediating interactions with natural enemies. This relationship between WIV and fitness has been studied almost exclusively in plant systems. While animals do not exhibit conspicuous reiterative components, they have traits that can vary at the individual level such as erythrocyte size. It is currently unknown if WIV in animals can influence individual fitness by mediating the outcome of interactions with natural enemies as it has been shown in plants. To address this issue, we tested for a relationship between WIV in erythrocyte size, hemoparasite infection status, and body condition (a proxy for fitness) in a Caribbean anole lizard. We quantified the coefficient of variation of adult erythrocytes size in $n = 95$ infected and $n = 107$ non-infected lizards. We found higher degrees of erythrocyte size variation in infected lizards than in non-infected individuals. However, we found no significant relationship between infection status or erythrocyte size variation, and lizard body condition. These results suggest that higher WIV in erythrocyte size in infected lizards is not necessarily adaptive but likely a consequence of the host response to infection. Many hemoparasites destroy their host cells as part of their life cycle. To compensate, the host lizard may respond by increasing production of erythrocytes resulting in higher WIV. Our results emphasize the need to better understand the role of within-animal variation as a neglected driver or consequence of ecological and evolutionary interactions.


Subject(s)
Lizards , Malaria , Animals , Lizards/parasitology , Malaria/veterinary , Erythrocytes , Erythrocyte Indices , Phenotype
5.
Plant Physiol Biochem ; 167: 459-469, 2021 Oct.
Article in English | MEDLINE | ID: mdl-34418592

ABSTRACT

The moss Physcomitrium (Physcomitrella) patens is a bryophyte that provides genetic information about the adaptation to the life on land by early Embryophytes and is a reference organism for comparative evolutionary studies in plants. Copper is an essential micronutrient for every living organism, its transport across the plasma membrane is achieved by the copper transport protein family COPT/CTR. Two genes related to the COPT family were identified in Physcomitrella patens, PpaCOPT1 and PpaCOPT2. Homology modelling of both proteins showed the presence of three putative transmembrane domains (TMD) and the Mx3M motif, constituting a potential Cu + selectivity filter present in other members of this family. Functional characterization of PpaCOPT1 and PpaCOPT2 in the yeast mutant ctr1Δctr3Δ restored its growth on medium with non-fermentable carbon sources at micromolar Cu concentrations, providing support that these two moss proteins function as high affinity Cu + transporters. Localization of PpaCOPT1 and PpaCOPT2 in yeast cells was observed at the tonoplast and plasma membrane, respectively. The heterologous expression of PpaCOPT2 in tobacco epidermal cells co-localized with the plasma membrane marker. Finally, only PpaCOPT1 was expressed in seven-day old protonema and was influenced by extracellular copper levels. This evidence suggests different roles of PpaCOPT1 and PpaCOPT2 in copper homeostasis in Physcomitrella patens.


Subject(s)
Bryopsida , Amino Acid Sequence , Bryopsida/genetics , Bryopsida/metabolism , Copper/metabolism , Copper Transport Proteins , Homeostasis
6.
Annu Rev Plant Biol ; 72: 463-495, 2021 06 17.
Article in English | MEDLINE | ID: mdl-33428476

ABSTRACT

Our knowledge of plant ion channels was significantly enhanced by the first application of the patch-clamp technique to isolated guard cell protoplasts over 35 years ago. Since then, research has demonstrated the importance of ion channels in the control of gas exchange in guard cells, their role in nutrient uptake in roots, and the participation of calcium-permeable cation channels in the regulation of cell signaling affected by the intracellular concentrations of this second messenger. In recent years, through the employment of reverse genetics, mutant proteins, and heterologous expression systems, research on ion channels has identified mechanisms that modify their activity through protein-protein interactions or that result in activation and/or deactivation of ion channels through posttranslational modifications. Additional and confirmatory information on ion channel functioning has been derived from the crystallization and molecular modeling of plant proteins that, together with functional analyses, have helped to increase our knowledge of the functioning of these important membrane proteins that may eventually help to improve crop yield. Here, an update on the advances obtained in plant ion channel function during the last few years is presented.


Subject(s)
Arabidopsis Proteins , Arabidopsis , Arabidopsis/metabolism , Arabidopsis Proteins/metabolism , Calcium/metabolism , Ion Channels , Plant Proteins
7.
Biochim Biophys Acta Mol Cell Res ; 1866(9): 1376-1388, 2019 09.
Article in English | MEDLINE | ID: mdl-31136755

ABSTRACT

Cargo receptors in the endoplasmic reticulum (ER) recognize and help membrane and soluble proteins along the secretory pathway to reach their location and functional site. We characterized physiological properties of Saccharomyces cerevisiae strains lacking the ERV14 gene, which encodes a cargo receptor part of COPII-coated vesicles that cycles between the ER and Golgi membranes. The lack of Erv14 resulted in larger cell volume, plasma-membrane hyperpolarization, and intracellular pH decrease. Cells lacking ERV14 exhibited increased sensitivity to toxic cationic drugs and decreased ability to grow on low K+. We found no change in the localization of plasma membrane H+-ATPase Pma1, Na+, K+-ATPase Ena1 and K+ importer Trk2 or vacuolar K+-Cl- co-transporter Vhc1 in the absence of Erv14. However, Erv14 influenced the targeting of two K+-specific plasma-membrane transport systems, Tok1 (K+ channel) and Trk1 (K+ importer), that were retained in the ER in erv14Δ cells. The lack of Erv14 resulted in growth phenotypes related to a diminished amount of Trk1 and Tok1 proteins. We confirmed that Rb+ whole-cell uptake via Trk1 is not efficient in cells lacking Erv14. ScErv14 helped to target Trk1 homologues from other yeast species to the S. cerevisiae plasma membrane. The direct interaction between Erv14 and Tok1 or Trk1 was confirmed by co-immunoprecipitation and by a mating-based Split Ubiquitin System. In summary, our results identify Tok1 and Trk1 to be new cargoes for Erv14 and show this receptor to be an important player participating in the maintenance of several physiological parameters of yeast cells.


Subject(s)
Biological Transport/physiology , Cation Transport Proteins/metabolism , Cell Membrane/metabolism , Membrane Potentials/physiology , Membrane Proteins/metabolism , Potassium Channels/metabolism , Potassium/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/metabolism , COP-Coated Vesicles/metabolism , Cation Transport Proteins/genetics , Cell Size , Endoplasmic Reticulum/metabolism , Gene Deletion , Gene Expression Regulation, Fungal , Glucose/metabolism , Golgi Apparatus/metabolism , Homeostasis , Hydrogen-Ion Concentration , Membrane Proteins/genetics , Potassium Channels/genetics , Proton-Translocating ATPases/metabolism , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins/genetics , Sodium/metabolism , Sodium-Potassium-Exchanging ATPase/metabolism , Transcriptome
8.
PLoS One ; 13(9): e0203654, 2018.
Article in English | MEDLINE | ID: mdl-30212503

ABSTRACT

Plant phosphorus (P) remobilisation during leaf senescence has fundamental implications for global P cycle fluxes. Hypothesising that genes involved in remobilisation of P from leaves during grain filling would show altered expression in response to P deprivation, we investigated gene expression in rice flag leaves at 8 days after anthesis (DAA) and 16 DAA in plants that received a continuous supply of P in the nutrient solution vs plants where P was omitted from the nutrient solution for 8 consecutive days prior to measurement. The transcriptional response to growth in the absence of P differed between the early stage (8 DAA) and the later stage (16 DAA) of grain filling. At 8 DAA, rice plants maintained production of energy substrates through upregulation of genes involved in photosynthesis. In contrast, at 16 DAA carbon substrates were produced by degradation of structural polysaccharides and over 50% of highly upregulated genes in P-deprived plants were associated with protein degradation and nitrogen/amino acid transport, suggesting withdrawal of P from the nutrient solution led to accelerated senescence. Genes involved in liberating inorganic P from the organic P compounds and vacuolar P transporters displayed differential expression depending on the stage of grain filling stage and timing of P withdrawal.


Subject(s)
Edible Grain/metabolism , Oryza/metabolism , Phosphorus/metabolism , Carbon/metabolism , Energy Metabolism/genetics , Gene Expression Regulation, Plant , Nitrogen/metabolism , Oryza/genetics , Oryza/growth & development , Photosynthesis/genetics , Plant Leaves/genetics , Plant Leaves/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , RNA, Plant/chemistry , RNA, Plant/metabolism
9.
Science ; 360(6388): 533-536, 2018 05 04.
Article in English | MEDLINE | ID: mdl-29724955

ABSTRACT

Compared to animals, evolution of plant calcium (Ca2+) physiology has led to a loss of proteins for influx and small ligand-operated control of cytosolic Ca2+, leaving many Ca2+ mechanisms unaccounted for. Here, we show a mechanism for sorting and activation of glutamate receptor-like channels (GLRs) by CORNICHON HOMOLOG (CNIH) proteins. Single mutants of pollen-expressed Arabidopsis thaliana GLRs (AtGLRs) showed growth and Ca2+ flux phenotypes expected for plasma membrane Ca2+ channels. However, higher-order mutants of AtGLR3.3 revealed phenotypes contradicting this assumption. These discrepancies could be explained by subcellular AtGLR localization, and we explored the implication of AtCNIHs in this sorting. We found that AtGLRs interact with AtCNIH pairs, yielding specific intracellular localizations. AtCNIHs further trigger AtGLR activity in mammalian cells without any ligand. These results reveal a regulatory mechanism underlying Ca2+ homeostasis by sorting and activation of AtGLRs by AtCNIHs.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/metabolism , Calcium Channels/metabolism , Calcium/metabolism , Pollen Tube/metabolism , Receptors, Glutamate/metabolism , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Cell Membrane/metabolism , Genetic Complementation Test , Homeostasis , Pollen Tube/genetics , Protein Transport , Receptors, Glutamate/genetics , Saccharomyces cerevisiae/genetics
10.
PLoS One ; 12(11): e0187521, 2017.
Article in English | MEDLINE | ID: mdl-29095945

ABSTRACT

Phosphorus (P) is translocated from vegetative tissues to developing seeds during senescence in annual crop plants, but the impact of this P mobilisation on photosynthesis and plant performance is poorly understood. This study investigated rice (Oryza sativa L.) flag leaf photosynthesis and P remobilisation in a hydroponic study where P was either supplied until maturity or withdrawn permanently from the nutrient solution at anthesis, 8 days after anthesis (DAA) or 16 DAA. Prior to anthesis, plants received either the minimum level of P in nutrient solution required to achieve maximum grain yield ('adequate P treatment'), or received luxury levels of P in the nutrient solution ('luxury P treatment'). Flag leaf photosynthesis was impaired at 16 DAA when P was withdrawn at anthesis or 8 DAA under adequate P supply but only when P was withdrawn at anthesis under luxury P supply. Ultimately, reduced photosynthesis did not translate into grain yield reductions. There was some evidence plants remobilised less essential P pools (e.g. Pi) or replaceable P pools (e.g. phospholipid-P) prior to remobilisation of P in pools critical to leaf function such as nucleic acid-P and cytosolic Pi. Competition for P between vegetative tissues and developing grains can impair photosynthesis when P supply is withdrawn during early grain filling. A reduction in the P sink strength of grains by genetic manipulation may enable leaves to sustain high rates of photosynthesis until the later stages of grain filling.


Subject(s)
Oryza/metabolism , Phosphorus/metabolism , Photosynthesis , Plant Leaves/metabolism , Biomass , Oryza/growth & development , Oryza/physiology , Plant Leaves/physiology
11.
Biochim Biophys Acta Mol Cell Res ; 1864(10): 1809-1818, 2017 Oct.
Article in English | MEDLINE | ID: mdl-28723420

ABSTRACT

The export of membrane proteins along the secretory pathway is initiated at the endoplasmic reticulum after proteins are folded and packaged inside this organelle by their recruiting into the coat complex COPII vesicles. It is proposed that cargo receptors are required for the correct transport of proteins to its target membrane, however, little is known about ER export signals for cargo receptors. Erv14/Cornichon belong to a well conserved protein family in Eukaryotes, and have been proposed to function as cargo receptors for many transmembrane proteins. Amino acid sequence alignment showed the presence of a conserved acidic motif in the C-terminal in homologues from plants and yeast. Here, we demonstrate that mutation of the C-terminal acidic motif from ScErv14 or OsCNIH1, did not alter the localization of these cargo receptors, however it modified the proper targeting of the plasma membrane transporters Nha1p, Pdr12p and Qdr2p. Our results suggest that mistargeting of these plasma membrane proteins is a consequence of a weaker interaction between the cargo receptor and cargo proteins caused by the mutation of the C-terminal acidic motif.


Subject(s)
Amino Acid Motifs/genetics , Cell Membrane/genetics , Membrane Proteins/genetics , Saccharomyces cerevisiae Proteins/genetics , ATP-Binding Cassette Transporters/genetics , Amino Acid Sequence/genetics , COP-Coated Vesicles/genetics , COP-Coated Vesicles/metabolism , Cell Membrane/metabolism , Endoplasmic Reticulum/genetics , Endoplasmic Reticulum/metabolism , Golgi Apparatus/genetics , Golgi Apparatus/metabolism , Membrane Proteins/metabolism , Membrane Transport Proteins/genetics , Oryza/genetics , Protein Folding , Protein Transport/genetics , Saccharomyces cerevisiae/genetics , Sequence Alignment , Sodium-Hydrogen Exchangers/genetics
12.
Planta ; 246(3): 433-451, 2017 Sep.
Article in English | MEDLINE | ID: mdl-28455771

ABSTRACT

MAIN CONCLUSION: Tobacco germinated and grew in the presence of high concentrations of cadmium and zinc without toxic symptoms. Evidence suggests that these ions are sequestered into the vacuole by heavy metal/H + exchanger mechanisms. Heavy metal hyperaccumulation and hypertolerance are traits shared by a small set of plants which show specialized physiological and molecular adaptations allowing them to accumulate and sequester toxic metal ions. Nicotiana tabacum was used to test its potential as a metal-accumulator in a glass house experiment. Seed germination was not affected in the presence of increasing concentrations of zinc and cadmium. Juvenile and adult plants could concentrate CdCl2 and ZnSO4 to levels exceeding those in the hydroponic growth medium and maintained or increased their leaf dry weight when treated with 0.5- or 1-mM CdCl2 or 1-mM ZnSO4 for 5 days. Accumulation of heavy metals did not affect the chlorophyll and carotenoid levels, while variable effects were observed in cell sap osmolarity. Heavy metal-dependent H+ transport across the vacuole membrane was monitored using quinacrine fluorescence quenching. Cadmium- or zinc-dependent fluorescence recovery revealed that increasing concentrations of heavy metals stimulated the activities of the tonoplast Cd2+ or Zn2+/H+ exchangers. Immunodetection of the V-ATPase subunits showed that the increased proton transport by zinc was not due to changes in protein amount. MTP1 and MTP4 immunodetection and semiquantitative RT-PCR of NtMTP1, NtNRAMP1, and NtZIP1 helped to identify the genes that are likely involved in sequestration of cadmium and zinc in the leaf and root tissue. Finally, we demonstrated that cadmium and zinc treatments induced an accumulation of zinc in leaf tissues. This study shows that N. tabacum possesses a hyperaccumulation response, and thus could be used for phytoremediation purposes.


Subject(s)
Antiporters/metabolism , Cadmium/pharmacology , Nicotiana/physiology , Plant Proteins/metabolism , Zinc/pharmacology , Adaptation, Physiological , Cadmium/metabolism , Cadmium Chloride/pharmacology , Carotenoids/metabolism , Chlorophyll/metabolism , Electrophoresis, Polyacrylamide Gel , Germination/drug effects , Immunoblotting , Metals, Heavy/metabolism , Plant Leaves/metabolism , Polymerase Chain Reaction , Nicotiana/drug effects , Nicotiana/metabolism , Vacuoles/metabolism , Zinc/metabolism , Zinc Sulfate/pharmacology
13.
Plant Physiol ; 173(1): 390-416, 2017 01.
Article in English | MEDLINE | ID: mdl-27837088

ABSTRACT

Ettlia oleoabundans is a nonsequenced oleaginous green microalga. Despite the significant biotechnological interest in producing value-added compounds from the acyl lipids of this microalga, a basic understanding of the physiology and biochemistry of oleaginous microalgae is lacking, especially under nitrogen deprivation conditions known to trigger lipid accumulation. Using an RNA sequencing-based proteomics approach together with manual annotation, we are able to provide, to our knowledge, the first membrane proteome of an oleaginous microalga. This approach allowed the identification of novel proteins in E. oleoabundans, including two photoprotection-related proteins, Photosystem II Subunit S and Maintenance of Photosystem II under High Light1, which were considered exclusive to higher photosynthetic organisms, as well as Retinitis Pigmentosa Type 2-Clathrin Light Chain, a membrane protein with a novel domain architecture. Free-flow zonal electrophoresis of microalgal membranes coupled to liquid chromatography-tandem mass spectrometry proved to be a useful technique for determining the intracellular location of proteins of interest. Carbon-flow compartmentalization in E. oleoabundans was modeled using this information. Molecular phylogenetic analyses of protein markers and 18S ribosomal DNA support the reclassification of E. oleoabundans within the trebouxiophycean microalgae, rather than with the Chlorophyceae class, in which it is currently classified, indicating that it may not be closely related to the model green alga Chlamydomonas reinhardtii A detailed survey of biological processes taking place in the membranes of nitrogen-deprived E. oleoabundans, including lipid metabolism, provides insights into the basic biology of this nonmodel organism.


Subject(s)
Algal Proteins/metabolism , Cell Membrane/metabolism , Membrane Proteins/metabolism , Microalgae/classification , Microalgae/physiology , Proteome/metabolism , Proteomics/methods , Base Sequence , Carbon/metabolism , Electron Transport , Electrophoresis , Lipid Metabolism , Mass Spectrometry , Membrane Proteins/chemistry , Microalgae/metabolism , Mitochondria/metabolism , Oxidative Phosphorylation , Photosynthesis , Phylogeny , Protein Domains , Subcellular Fractions/metabolism
14.
Plant Biotechnol J ; 15(1): 15-26, 2017 01.
Article in English | MEDLINE | ID: mdl-27228336

ABSTRACT

The physiology and molecular regulation of phosphorus (P) remobilization from vegetative tissues to grains during grain filling is poorly understood, despite the pivotal role it plays in the global P cycle. To test the hypothesis that a subset of genes involved in the P starvation response are involved in remobilization of P from flag leaves to developing grains, we conducted an RNA-seq analysis of rice flag leaves during the preremobilization phase (6 DAA) and when the leaves were acting as a P source (15 DAA). Several genes that respond to phosphate starvation, including three purple acid phosphatases (OsPAP3, OsPAP9b and OsPAP10a), were significantly up-regulated at 15 DAA, consistent with a role in remobilization of P from flag leaves during grain filling. A number of genes that have not been implicated in the phosphate starvation response, OsPAP26, SPX-MFS1 (a putative P transporter) and SPX-MFS2, also showed expression profiles consistent with involvement in P remobilization from senescing flag leaves. Metabolic pathway analysis using the KEGG system suggested plastid membrane lipid synthesis is a critical process during the P remobilization phase. In particular, the up-regulation of OsPLDz2 and OsSQD2 at 15 DAA suggested phospholipids were being degraded and replaced by other lipids to enable continued cellular function while liberating P for export to developing grains. Three genes associated with RNA degradation that have not previously been implicated in the P starvation response also showed expression profiles consistent with a role in P mobilization from senescing flag leaves.


Subject(s)
Edible Grain/genetics , Gene Expression Regulation, Plant , Oryza/genetics , Oryza/metabolism , Phosphorus/metabolism , Plant Leaves/metabolism , Sequence Analysis, RNA/methods , Aging , Base Sequence , Chromosome Mapping , Genes, Plant/genetics , Lipid Metabolism , Metabolic Networks and Pathways/genetics , Phosphorus/analysis , Plant Proteins/genetics , Plant Proteins/metabolism , Up-Regulation
15.
Biochim Biophys Acta ; 1858(1): 67-74, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26440927

ABSTRACT

The yeast Nha1p Na(+), K(+)/H(+) antiporter has a house-keeping role in pH and cation homeostasis. It is also needed to alleviate excess Na(+) or K(+) from the cytoplasm under high external concentrations of these cations. Erv14p, a putative cargo receptor for transmembrane proteins is required for trafficking of Nha1p from the endoplasmic reticulum to the plasma membrane. Sensitivity to high Na(+) concentrations of the erv14 mutant associated to the intracellular mislocalization of Nha1p-GFP, together with a lower Na(+) efflux, indicate the involvement of this mutual association to accomplish the survival of the yeast cell upon sodium stress. This observation is supported by the protein-protein interaction between Erv14p and Nha1p detected by the mating-based Split Ubiquitin System and co-immunoprecipitation assays. Our results indicate that even though Erv14p interacts with Nha1p through the TMD, the C-terminal is important not only for the efficient delivery of Nha1p to the plasma membrane but also for its dimerization to accomplish its role in yeast salt tolerance.


Subject(s)
Cation Transport Proteins/chemistry , Gene Expression Regulation, Fungal , Membrane Proteins/chemistry , Potassium/metabolism , Protons , Saccharomyces cerevisiae Proteins/chemistry , Saccharomyces cerevisiae/metabolism , Sodium Chloride/metabolism , Sodium-Hydrogen Exchangers/chemistry , Biological Transport , Cation Transport Proteins/genetics , Cation Transport Proteins/metabolism , Cations, Monovalent , Membrane Proteins/genetics , Membrane Proteins/metabolism , Potassium/pharmacology , Protein Binding , Protein Interaction Domains and Motifs , Protein Multimerization , Protein Structure, Secondary , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Saccharomyces cerevisiae/drug effects , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism , Salt Tolerance , Sodium Chloride/pharmacology , Sodium-Hydrogen Exchangers/genetics , Sodium-Hydrogen Exchangers/metabolism
16.
New Phytol ; 207(3): 627-44, 2015 Aug.
Article in English | MEDLINE | ID: mdl-25944243

ABSTRACT

Mesembryanthemum crystallinum (ice plant) exhibits extreme tolerance to salt. Epidermal bladder cells (EBCs), developing on the surface of aerial tissues and specialized in sodium sequestration and other protective functions, are critical for the plant's stress adaptation. We present the first transcriptome analysis of EBCs isolated from intact plants, to investigate cell type-specific responses during plant salt adaptation. We developed a de novo assembled, nonredundant EBC reference transcriptome. Using RNAseq, we compared the expression patterns of the EBC-specific transcriptome between control and salt-treated plants. The EBC reference transcriptome consists of 37 341 transcript-contigs, of which 7% showed significantly different expression between salt-treated and control samples. We identified significant changes in ion transport, metabolism related to energy generation and osmolyte accumulation, stress signalling, and organelle functions, as well as a number of lineage-specific genes of unknown function, in response to salt treatment. The salinity-induced EBC transcriptome includes active transcript clusters, refuting the view of EBCs as passive storage compartments in the whole-plant stress response. EBC transcriptomes, differing from those of whole plants or leaf tissue, exemplify the importance of cell type-specific resolution in understanding stress adaptive mechanisms.


Subject(s)
Mesembryanthemum/cytology , Mesembryanthemum/genetics , Plant Epidermis/cytology , Plant Epidermis/genetics , Salinity , Transcriptome/genetics , Gene Expression Profiling , Gene Expression Regulation, Plant/drug effects , Gene Ontology , Gene Regulatory Networks/drug effects , Mesembryanthemum/drug effects , Molecular Sequence Annotation , Plant Epidermis/drug effects , RNA, Messenger/genetics , RNA, Messenger/metabolism , Sodium Chloride/pharmacology , Stress, Physiological/drug effects , Transcriptome/drug effects
17.
J Exp Bot ; 66(9): 2733-48, 2015 May.
Article in English | MEDLINE | ID: mdl-25750424

ABSTRACT

Membrane proteins are synthesized and folded in the endoplasmic reticulum (ER), and continue their path to their site of residence along the secretory pathway. The COPII system has been identified as a key player for selecting and directing the fate of membrane and secretory cargo proteins. Selection of cargo proteins within the COPII vesicles is achieved by cargo receptors. The cornichon cargo receptor belongs to a conserved protein family found in eukaryotes that has been demonstrated to participate in the selection of integral membrane proteins as cargo for their correct targeting. Here it is demonstrated at the cellular level that rice cornichon OsCNIH1 interacts with OsHKT1;3 and, in yeast cells, enables the expression of the sodium transporter to the Golgi apparatus. Physical and functional HKT-cornichon interactions are confirmed by the mating-based split ubiquitin system, bimolecular fluorescence complementation, and Xenopus oocyte and yeast expression systems. The interaction between the two proteins occurs in the ER of plant cells and their co-expression in oocytes leads to the sequestration of the transporter in the ER. In the yeast cornichon mutant erv14, OsHKT1;3 is mistargeted, preventing the toxic effects of sodium transport in the cell observed in wild-type cells or in the erv14 mutant that co-expressed OsHKT1;3 with either OsCNIH1 or Erv14p. Identification and characterization of rice cornichon as a possible cargo receptor opens up the opportunity to improve our knowledge on membrane protein targeting in plant cells.


Subject(s)
Cation Transport Proteins/metabolism , Golgi Apparatus/metabolism , Oryza/metabolism , Plant Proteins/physiology , Amino Acid Sequence , Animals , Biological Transport , Cation Transport Proteins/genetics , Endoplasmic Reticulum/metabolism , Membrane Transport Proteins/genetics , Membrane Transport Proteins/metabolism , Membrane Transport Proteins/physiology , Molecular Sequence Data , Oryza/genetics , Plant Proteins/genetics , Plant Proteins/metabolism , Protein Interaction Mapping , Sequence Alignment , Sequence Analysis, Protein , Sodium/metabolism , Xenopus
18.
J Proteomics ; 111: 113-27, 2014 Dec 05.
Article in English | MEDLINE | ID: mdl-24892798

ABSTRACT

Halophytes have evolved unique molecular strategies to overcome high soil salinity but we still know very little about the main mechanisms that these plants use to complete their lifecycle under salinity stress. One useful approach to further our understanding in this area is to directly compare the response to salinity of two closely related species which show diverse levels of salt tolerance. Here we present a comparative proteomic study using DIGE of leaf microsomal proteins to identify salt-responsive membrane associated proteins in Arabidopsis thaliana (a glycophyte) and Thellungiella salsuginea (a halophyte). While a small number of distinct protein abundance changes were observed upon salt stress in both species, the most notable differences were observed between species and specifically, in untreated plants with a total of 36 proteins displaying significant abundance changes. Gene ontology (GO) term enrichment analysis showed that the majority of these proteins were distributed into two functional categories; transport (31%) and carbohydrate metabolism (17%). Results identify several novel salt responsive proteins in this system and support the theory that T. salsuginea shows a high degree of salt-tolerance because molecular mechanisms are primed to deal with the stress. This intrinsic ability to anticipate salinity stress distinguishes it from the glycophyte A. thaliana. BIOLOGICAL SIGNIFICANCE: There is significant interest in understanding the molecular mechanisms that plants use to tolerate salinity as soil salinization is becoming an increasing concern for agriculture with high soil Na(+) levels leading to reduced yields and economic loss. Much of our knowledge on the molecular mechanisms employed by plants to combat salinity stress has come from work on salt-sensitive plants, but studies on naturally occurring highly salt-resistant plants, halophytes, and direct comparisons between closely related glycophytes and halophytes, could help to further our understanding of salinity tolerance mechanisms. In this study, employing two closely related species which differ markedly in their salt-tolerance, we carried out a quantitative proteomic approach using 2D-DIGE to identify salt-responsive proteins and compare and contrast the differences between the two plant species. Our work complements a previous study using iTRAQ technology (34) and highlights the benefits of using alternative technologies and approaches to gain a broader representation of the salt-responsive proteome in these species.


Subject(s)
Arabidopsis/metabolism , Brassica/metabolism , Plant Proteins/metabolism , Salt-Tolerant Plants/metabolism , Arabidopsis Proteins/metabolism , Carbohydrates/chemistry , Chlorophyll/chemistry , Chromatography, Liquid , Databases, Protein , Electrophoresis, Gel, Two-Dimensional , Osmolar Concentration , Protein Biosynthesis , Proteome , Proteomics/methods , Tandem Mass Spectrometry
19.
J Biol Chem ; 289(21): 14448-57, 2014 May 23.
Article in English | MEDLINE | ID: mdl-24706763

ABSTRACT

Cell penetrating peptides (CPP) and cationic antibacterial peptides (CAP) have similar physicochemical properties and yet it is not understood how such similar peptides display different activities. To address this question, we used Iztli peptide 1 (IP-1) because it has both CPP and CAP activities. Combining experimental and computational modeling of the internalization of IP-1, we show it is not internalized by receptor-mediated endocytosis, yet it permeates into many different cell types, including fungi and human cells. We also show that IP-1 makes pores in the presence of high electrical potential at the membrane, such as those found in bacteria and mitochondria. These results provide the basis to understand the functional redundancy of CPPs and CAPs.


Subject(s)
Anti-Bacterial Agents/pharmacology , Antimicrobial Cationic Peptides/pharmacology , Cell-Penetrating Peptides/pharmacology , Peptides/pharmacology , Algorithms , Amino Acid Sequence , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/metabolism , Antimicrobial Cationic Peptides/chemistry , Antimicrobial Cationic Peptides/pharmacokinetics , Cell Membrane/drug effects , Cell Membrane/metabolism , Cell-Penetrating Peptides/chemistry , Cell-Penetrating Peptides/pharmacokinetics , Endocytosis/genetics , HEK293 Cells , Humans , Kinetics , Mating Factor , Microbial Viability/drug effects , Microbial Viability/genetics , Models, Biological , Molecular Sequence Data , Mutation , Peptides/chemistry , Peptides/pharmacokinetics , Saccharomyces cerevisiae/drug effects , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism
20.
J Proteomics ; 111: 128-38, 2014 Dec 05.
Article in English | MEDLINE | ID: mdl-24642212

ABSTRACT

Plant zinc (Zn) homeostasis must be tightly regulated as the requirement for this micronutrient necessitates its uptake. However, excessive Zn can lead to toxicity and the plant must respond rapidly and effectively within its capacity to minimize damage. To detect mechanisms that may be important for coping with excess Zn we carried out a quantitative proteomics approach using 2D-DIGE to identify Zn-responsive proteins in microsomal fractions from leaves of 4day, 200µM Zn-treated, Arabidopsis thaliana plants. Of the eight proteins which showed significant changes in abundance in the Zn-treated samples and which met all of the selection criteria following statistical analysis, six were successfully identified by LC-MS/MS with 2 or more unique peptides. Three of the proteins were found to be involved in the one-carbon metabolism pathway; including glycine decarboxylase P protein, serine hydroxymethyltransferase (SHMT) and methionine synthase, all of which showed reduced abundance in the Zn-treated samples. Western blot analysis confirmed the decrease in SHMT, while changes in metal tolerance protein indicated plants were most likely actively sequestering Zn. Interestingly, excess Zn led to increased petiole length, a phenotype which may reflect the reduced levels of methionine, a key product of the one-carbon metabolism pathway. BIOLOGICAL SIGNIFICANCE: Metal contamination is becoming an increasingly common environmental problem. High levels of zinc can be found in certain soils naturally or as a result of long-term anthropogenic activity which leads to its accumulation; i.e. use of fertilizers or industrial waste. The study of metal tolerant plants, particularly those classified as hyperaccumulators has been driven by the potential use of these plants for bioremediation purposes. However, the effects of heavy metal exposure on sensitive plants and the different cellular processes that are affected have received significantly less attention. We are interested in identifying proteins in A. thaliana that are induced as a result of exposure to subtoxic levels of heavy metals with the aim of discovering novel participants in heavy metal stress and adaptation.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/enzymology , Metals, Heavy/chemistry , Proteome , Zinc/chemistry , Blotting, Western , Carbon/chemistry , Chlorophyll/chemistry , Coloring Agents/chemistry , Electrophoresis, Gel, Two-Dimensional , Glycine Hydroxymethyltransferase/metabolism , Hydrogen-Ion Concentration , Metals/chemistry , Methionine/chemistry , Microsomes/metabolism , Plant Leaves/metabolism , Proteomics , Soil , Spectrometry, Mass, Electrospray Ionization
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