Implementation of Multi-level Interventions to Mitigate Risk of SARS-CoV-2 Delta Variant at a PUBLIC UNIVERSITY in Southern United States.

During the coronavirus disease 2019 (COVID-19) pandemic, navigating the implementation of public health measures in a politically charged environment for a large state entity was challenging. However, Louisiana State University (LSU) leadership developed and deployed an effective, multi-layered mitigation plan and successfully opened in-person learning while managing cases of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) during the fourth surge. We describe the plan to provide a framework for other institutions during this and future responses. The goals were 3-fold: maintain a quality learning environment, mitigate risk to the campus community, and ensure that LSU operations did not contribute to health-care stress. As of September 2022, LSU has achieved high compliance with interventions and relatively low virus activity on campus compared with peer institutions. This university model can serve as a template for similar implementation plans in the context of complex socio-political and economic considerations.

Alterations of endophytic microbial community function in Spartina alterniflora as a result of crude oil exposure.

The 2010 Deepwater Horizon disaster remains one of the largest oil spills in history. This event caused significant damage to coastal ecosystems, the full extent of which has yet to be fully determined. Crude oil contains toxic heavy metals and substances such as polycyclic aromatic hydrocarbons that are detrimental to some microbial species and may be used as food and energy resources by others. As a result, oil spills have the potential to cause significant shifts in microbial communities. This study assessed the impact of oil contamination on the function of endophytic microbial communities associated with saltmarsh cordgrass (Spartina alterniflora). Soil samples were collected from two locations in coastal Louisiana, USA: one severely affected by the Deepwater Horizon oil spill and one relatively unaffected location. Spartina alterniflora seedlings were grown in both soil samples in greenhouses, and GeoChip 5.0 was used to evaluate the endophytic microbial metatranscriptome shifts in response to host plant oil exposure. Oil exposure was associated with significant shifts in microbial gene expression in functional categories related to carbon cycling, virulence, metal homeostasis, organic remediation, and phosphorus utilization. Notably, significant increases in expression were observed in genes related to metal detoxification with the exception of chromium, and both significant increases and decreases in expression were observed in functional gene subcategories related to hydrocarbon metabolism. These findings show that host oil exposure elicits multiple changes in gene expression from their endophytic microbial communities, producing effects that may potentially impact host plant fitness.

Intraspecific variation in landform engineering across a restored salt marsh shoreline.

Ecosystem engineers that modify landforms can be valuable tools for restoring habitat, but their use has frequently resulted in unanticipated outcomes. Departures from expectations might arise because applications discount the possibility that geomorphic processes are influenced by heritable phenotypic variation. We conducted a field-scale common garden experiment to assess whether shoreline erosion reflects intraspecific variation in the landform engineer Spartina alterniflora. Replicated plots on a shoreline denuded by the Deepwater Horizon oil spill were revegetated using plants from four genetically distinct sources: the local population, a nonlocal population, and two nursery stocks. We assessed variation in biomass, tissue nutrients, and functional traits alongside soil shear strength, surface elevation, and shoreline erosion rates over 2 years. We found that productivity, traits, nutrient content, and erosion rates varied according to plant provenance. Erosion reflected traits like root architecture more so than coarser metrics of growth. Erosion was significantly higher in plots with nonlocal plants that exhibited lower productivity, likely due to nitrogen limitation. Our results indicate that restoration practices should account for intraspecific variation in landform engineers and that in situ trials should be performed at sites slated for restoration to evaluate donor source suitability, particularly if introductions might modify local populations.

Biodegradation of MC252 polycyclic aromatic hydrocarbons and alkanes in two coastal wetlands.

Complementary microbial and geochemical assessment techniques investigated the biodegradation of PAHs and alkanes in salt marshes impacted by crude oil following the Macondo spill. Contamination was observed in the top 10 cm of the marsh profile based on PAH analysis and measurement of the δ13C signature of impacted marsh soils. Measurement of evolution of 13C depleted CO2 indicated mineralization of crude oil ranging from 2.7-12.1 mg CO2-C/m2-hr. Changes in weathering ratios of alkylated phenanthrenes and dibenzothiophenes indicated loss of these 3-ring PAHs consistent with biodegradation. A diverse microbial population was observed at both locations dominated by Gammaproteobacteria and including known hydrocarbon degraders such as Marinobacter and Alcanivorax. There was shared richness between sites and across seasons but results suggested substantial turnover of phylotypes in space and time. Biodegradation of alkanes and alkylated PAHs occurred when oxygen was provided in laboratory reactors but not in the absence of oxygen.

Rhizosphere microbial communities reflect genotypic and trait variation in a salt marsh ecosystem engineer.

PREMISE: There is growing recognition that intraspecific genetic variation in plants can influence associated soil microbial communities, but the functional bridges linking plant genotype with microbial community structure are not well understood. This deficit is due in part to a prevailing focus on characterizing relationships between microbial communities and functional trait variation among plant species or across plant communities, rather than within a single species. METHODS: We examined whether and how spatiotemporal variation in salt marsh rhizosphere microbial communities reflect plant provenance (genotypic variation) and associated trait variation within an ecosystem engineer, Spartina alterniflora. We planted S. alterniflora from four genetically distinct source populations in replicate sets of experimental plots across a shoreline in southeastern Louisiana, USA. After 2 years, we measured functional plant traits and profiled microbial communities. RESULTS: Bacterial and fungal α-diversity and richness were significantly higher in winter than in summer and corresponded to plant trait variation associated with provenance. Notably, 20% of the variation in fungal community composition was explained by trait differences while bacterial community structure did not reflect plant provenance or trait variation. However, evidence was found suggesting that bacterial communities are indirectly shaped by the influence of plant provenance on soil physicochemical properties. CONCLUSIONS: This study illustrates that intraspecific genetic and corresponding trait variation in an ecosystem engineer can shape rhizosphere microbial communities, with fungal communities being more responsive than bacteria to the influence of plant provenance and associated trait variation. Our results highlight the potential relevance of plant intraspecific variation in plant-microbe-soil feedbacks shaping naturally depauperate ecosystems like salt marshes.

Biogeochemical controls on biodegradation of buried oil along a coastal headland beach.

Laboratory experiments investigated oxygen dynamics in buried oiled sands sampled from areas impacted by the Macondo spill. Measured oxygen fluxes in oil deposits that were permeable to tidal water ranged from 10-3 to 10-4 µmol/cm2-sec, orders of magnitude higher than fluxes in non-permeable deposits (10-6 to 10-7 µmol/cm2-sec). Oxygen dynamics were well described by 1-d models that represent increased oxygen consumption in oiled sands. Experiments demonstrated that when oxygen is present and the oil deposit is permeable to tidal water, biodegradation of alkylated phenanthrenes and dibenzothiophenes proceeded over time scales (i.e., weeks) to have a significant impact on the mass and quality of buried oil. For this biodegradation process to proceed, two independent conditions must be met, a source of oxygenated water has to be present (e.g., tidal flushing in the intertidal zone) and the oiled deposit has to be permeable to water (i.e., pores cannot be completely saturated with oil).

Persisting responses of salt marsh fungal communities to the Deepwater Horizon oil spill.

The plant microbiome, composed of diverse interacting microorganisms, is thought to undergird host integrity and well-being. Though it is well understood that environmental perturbations like oil pollution can alter the diversity and composition of microbiomes, remarkably little is known about how disturbance alters plant-fungal associations. Using Next-Generation sequencing of the 18S rDNA internal transcribed spacer (ITS1) region, we examined outcomes of enduring oil exposure on aboveground leaf and belowground endophytic root and rhizosphere fungal communities of Spartina alterniflora, a highly valued ecosystem engineer in southeastern Louisiana marshes affected by the 2010 Deepwater Horizon accident. We found that aboveground foliar fungal communities exhibited site-dependent compositional turnover with consequent loss in diversity according to oiling history. Rhizosphere soil communities also exhibited shifts in community composition associated with oiling history, whereas root endophytic communities did not. Oiling did not increase or decrease similarities among aboveground and belowground communities within an individual host, indicating that host plant characteristics exert stronger control than external factors on fungal community composition. These results show that fungal community responses to oiling vary within tissues of the same host plant, and that differences in the local environment, or alternatively, site-specific differences in residual oil constrain the magnitude of exposure responses. Our study offers novel perspectives on how environmental contaminants and perturbations can influence plant microbiomes, highlighting the importance of assessing long-term ecological outcomes of oil pollution to better understand how shifts in microbial communities influence plant performance and ecosystem function. Our findings are relevant to coastal management programs tasked with responding to oil spills and increasing pressures arising from intensifying development and climate change. Understanding how modification of plant-microbiome associations influences plant performance, particularly of ecosystem engineers like S. alterniflora, can help guide efforts to protect and restore at-risk coastal ecosystems.

Transport of crude oil and associated microbial populations by washover events on coastal headland beaches.

Storm-driven transport of MC252 oil, sand and shell aggregates was studied on a low-relief coastal headland beach in Louisiana, USA including measurement of alkylated PAHs and Illumina sequencing of intra-aggregate microbial populations. Weathering ratios, constructed from alkylated PAH data, were used to assess loss of 3-ring phenanthrenes and dibenzothiophenes relative to 4-ring chrysenes. Specific aggregate types showed relatively little weathering of 3-ring PAHs referenced to oil sampled near the Macondo wellhead with the exception of certain SRBs sampled from the supratidal environment and samples from deposition areas north of beach. Aggregates mobilized by these storm-driven washover events contains diverse microbial populations dominated by the class Gammaproteobacteria including PAH-degrading genera such as Halomonas, Marinobacter and Idiomarina. Geochemical assessment of porewater in deposition areas, weathering observations, and microbial data suggest that storm remobilization can contribute to susceptibility of PAHs to biodegradation by moving oil to beach microenvironments with more favorable characteristics. (149).

Deposition of sulfur and nitrogen components in Louisiana in August, 2011.

Dry and wet deposition of sulfur and nitrogen contained air pollutants lead to increase of sulfur and nitrogen to the surface, causing acidification of surface water bodies and subsequent damage to aquatic and terrestrial ecosystems. Louisiana has abundant water resources and it is important to protect water resources from excessive atmospheric deposition of sulfur and nitrogen. However, the information for understanding sulfur and nitrogen deposition and adverse effects in Louisiana is limited. In this study, a source-oriented version of the Community Multi-scale Air Quality (CMAQ) model was used to simulate emission, formation, transport, and deposition of sulfur and nitrogen species in Louisiana in August 2011 to understand the forms and quantities of sulfur and nitrogen deposition due to wet and dry processes in Louisiana, to show the spatial and temporal variations of deposition fluxes, and to quantify the contributions of different sources to sulfur and nitrogen deposition. Aerosol phase sulfate (AeroSO4) has the highest monthly total flux of 6 kg S/ha in wet deposition of sulfur. Major forms of sulfur dry depositions are AeroSO4 (~1 kg S/ha) and SO2 (~3 kg S/ha). Nitrogen deposition is mainly in forms of NO2, HNO3, NH3, and aerosol phase nitrate (AeroNO3). Electric generating utilities (EGU) are the largest contributor to sulfur depositions with monthly total flux of 1.6 kg S/ha, followed by industry (1 kg S/ha) and upwind sources. On-road vehicles and industry are important to nitrogen (except ammonia) depositions with maximum contributions of 0.6 kg N/ha and 0.8 kg N/ha, respectively. The dominate source of ammonia is "Other" implicit sector including agricultural activities.

The use of chlorate, nitrate, and perchlorate to promote crude oil mineralization in salt marsh sediments.

Due to the high volume of crude oil released by the Deepwater Horizon oil spill, the salt marshes along the gulf coast were contaminated with crude oil. Biodegradation of crude oil in salt marshes is primarily limited by oxygen availability due to the high organic carbon content of the soil, high flux rate of S(2-), and saturated conditions. Chlorate, nitrate, and perchlorate were evaluated for use as electron acceptors in comparison to oxygen by comparing oil transformation and mineralization in mesocosms consisting of oiled salt marsh sediment from an area impacted by the BP Horizon oil spill. Mineralization rates were determined by measuring CO2 production and δ (13)C of the produced CO2 and compared to transformation evaluated by measuring the alkane/hopane ratios over a 4-month period. Total alkane/hopane ratios decreased (~55-70 %) for all treatments in the following relative order: aerated ≈ chlorate > nitrate > perchlorate. Total CO2 produced was similar between treatments ranging from 550-700 mg CO2-C. The δ (13)C-CO2 values generally ranged between the indigenous carbon and oil values (-17 and -27‰, respectively). Oil mineralization was greatest for the aerated treatments and least for the perchlorate amended. Our results indicate that chlorate has a similar potential as oxygen to support oil mineralization in contaminated salt marshes, but nitrate and perchlorate were less effective. The use of chlorate as a means to promote oil mineralization in situ may be a promising means to remediate contaminated salt marshes while preventing unwanted secondary impacts related to nutrient management as in the case of nitrate amendments.

Distribution, characterization, and exposure of MC252 oil in the supratidal beach environment.

The distribution and characteristics of MC252 oil:sand aggregates, termed surface residue balls (SRBs), were measured on the supratidal beach environment of oil-impacted Fourchon Beach in Louisiana (USA). Probability distributions of 4 variables, surface coverage (%), size of SRBs (mm(2) of projected area), mass of SRBs per m(2) (g/m(2)), and concentrations of polycyclic aromatic hydrocarbons (PAHs) and n-alkanes in the SRBs (mg of crude oil component per kg of SRB) were determined using parametric and nonparametric statistical techniques. Surface coverage of SRBs, an operational remedial standard for the beach surface, was a gamma-distributed variable ranging from 0.01% to 8.1%. The SRB sizes had a mean of 90.7 mm(2) but fit no probability distribution, and a nonparametric ranking was used to describe the size distributions. Concentrations of total PAHs ranged from 2.5 mg/kg to 126 mg/kg of SRB. Individual PAH concentration distributions, consisting primarily of alkylated phenanthrenes, dibenzothiophenes, and chrysenes, did not consistently fit a parametric distribution. Surface coverage was correlated with an oil mass per unit area but with a substantial error at lower coverage (i.e., <2%). These data provide probabilistic risk assessors with the ability to specify uncertainty in PAH concentration, exposure frequency, and ingestion rate, based on SRB characteristics for the dominant oil form on beaches along the US Gulf Coast.

Biodegradation of MC252 oil in oil:sand aggregates in a coastal headland beach environment.

Unique oil:sand aggregates, termed surface residue balls (SRBs), were formed on coastal headland beaches along the northern Gulf of Mexico as emulsified MC252 crude oil mixed with sand following the Deepwater Horizon spill event. The objective of this study is to assess the biodegradation potential of crude oil components in these aggregates using multiple lines of evidence on a heavily-impacted coastal headland beach in Louisiana, USA. SRBs were sampled over a 19-month period on the supratidal beach environment with reasonable control over and knowledge of the residence time of the aggregates on the beach surface. Polycyclic aromatic hydrocarbons (PAHs) and alkane concentration ratios were measured including PAH/C30-hopane, C2/C3 phenanthrenes, C2/C3 dibenzothiophenes and alkane/C30-hopane and demonstrated that biodegradation was occurring in SRBs in the supratidal. These biodegradation reactions occurred over time frames relevant to the coastal processes moving SRBs off the beach. In contrast, submerged oil mat samples from the intertidal did not demonstrate chemical changes consistent with biodegradation. Review and analysis of additional biogeochemical parameters suggested the existence of a moisture and nutrient-limited biodegradation regime on the supratidal beach environment. At this location, SRBs possess moisture contents <2% and molar C:N ratios from 131-323, well outside of optimal values for biodegradation in the literature. Despite these limitations, biodegradation of PAHs and alkanes proceeded at relevant rates (2-8 year(-1)) due in part to the presence of degrading populations, i.e., Mycobacterium sp., adapted to these conditions. For submerged oil mat samples in the intertidal, an oxygen and salinity-impacted regime is proposed that severely limits biodegradation of alkanes and PAHs in this environment. These results support the hypothesis that SRBs deposited at different locations on the beach have different biogeochemical characteristics (e.g., moisture, salinity, terminal electron acceptors, nutrient, and oil composition) due, in part, to their location on the landscape.

Biogeochemical characterization of MC252 oil:sand aggregates on a coastal headland beach.

MC252 oil:sand aggregates, termed surface residue balls (SRBs), were sampled for physical, chemical and microbial characteristics from different tidal zones on a coastal headland beach in Louisiana, USA. Supratidal SRBs were smaller, had low moisture content, and salinities that were <2 ppt. Intertidal SRBs were hypersaline and had higher N and sulfate concentrations, consistent with regular tidal inundation. Crude oil components were highest in the intertidal "oil mat" SRBs with C1- and C2-phenanthrenes, C2- and C3-dibenzothiophenes comprising the majority of the PAH concentrations. In the other SRB categories, PAHs and alkanes were depleted and profiles were skewed toward higher molecular weight compounds. Oxygen microelectrode measurements demonstrated that saturated O2 is present immediately after wetting, but O2 consumption in the interior of the aggregate occurs after a few days. Microbial populations varied with position on the beach but sequences similar to known PAH-degrading taxa (Mycobacterium sp. and Stenotrophomonas sp.) were observed.

Air quality during demolition and recovery activities in post-Katrina New Orleans.

Air samples were collected during demolition and cleanup operations in the Lakeview district of New Orleans, Louisiana, USA, in late 2005 during the period immediately after Hurricane Katrina. Three different high-volume air samples were collected around waste collection areas that were created to temporarily hold the debris from the cleanup of residential properties in the area. Particulate concentrations were elevated and included crystalline fibers associated with asbestos. Metal concentrations on particulate matter resembled those measured in sediments deposited by floodwaters with the exception of Ba, which was elevated at all three locations. The highest organic contaminant concentration measured on particulates was the pesticide Ziram (Zinc, bis[diethylcarbamodithioato-S,S']-, [T-4]-) at 2,200 microg/g of particulate matter during sampling period 2. Ziram is used in latex paint, adhesives, caulking, and wallboard as a preservative. Fungal isolates developed from particulate air samples included species associated with disease including Aspergillus and Penicillium species. These data represent the most comprehensive assessment of demolition activities during the period immediately after Hurricane Katrina.

Reduction of trichloroethylene and nitrate by zero-valent iron with peat.

The feasibility of using zero-valent iron (ZVI) and peat mixture as in situ barriers for contaminated sediments and groundwater was investigated. Trichloroethylene (TCE) and nitrate (NO(3)(-)), redox sensitive contaminants were reduced by ZVI and peat soil mixture under anaerobic condition. Peat was used to support the sorption of TCE, microbial activity for biodegradation of TCE and denitrification while TCE and nitrate were reduced by ZVI. Decreases in TCE concentrations were mainly due to ZVI, while peat supported denitrifying microbes and further affected the sorption of TCE. Due to the competition of electrons, nitrate reduction was inhibited by TCE, while TCE reduction was not affected by nitrate. From the results of peat and sterilized peat, it can be concluded that peat was involved in both dechlorination and denitrification but biological reduction of TCE was negligible compared to that of nitrate. The results from hydrogen and methane gas analyses confirmed that hydrogen utilization by microbes and methanogenic process had occurred in the ZVI-peat system. Even though effect of the peat on TCE reduction were quantitatively small, ZVI and peat contributed to the removal of TCE and nitrate independently. The 16S rRNA analysis revealed that viable bacterial diversity was narrow and the most frequently observed genera were Bacillus and Staphylococcus spp.

Effect of competitive terminal electron acceptor processes on dechlorination of cis-1,2-dichloroethene and 1,2-dichloroethane in constructed wetland soils.

Thermodynamic calculations were coupled with time-series measurements of chemical species (parent and daughter chlorinated solvents, H(2), sulfite, sulfate and methane) to predict the anaerobic transformation of cis-1,2-dichloroethene (cis-1,2-DCE) and 1,2-dichloroethane (1,2-DCA) in constructed wetland soil microcosms inoculated with a dehalorespiring culture. For cis-1,2-DCE, dechlorination occurred simultaneously with sulfite and sulfate reduction but competitive exclusion of methanogenesis was observed due to the rapid H(2) drawdown by the dehalorespiring bacteria. Rates of cis-1,2-DCE dechlorination decreased proportionally to the free energy yield of the competing electron acceptor and proportionally to the rate of H(2) drawdown, suggesting that H(2) competition between dehalorespirers and other populations was occurring, affecting the dechlorination rate. For 1,2-DCA, dechlorination occurred simultaneously with methanogenesis and sulfate reduction but occurred only after sulfite was completely depleted. Rates of 1,2-DCA dechlorination were unaffected by the presence of competing electron-accepting processes. The absence of a low H(2) threshold suggests that 1,2-DCA dechlorination is a cometabolic transformation, occurring at a higher H(2) threshold, despite the high free energy yields available for dehalorespiration of 1,2-DCA. We demonstrate the utility of kinetic and thermodynamic calculations to understand the complex, H(2)-utilizing reactions occurring in the wetland bed and their effect on rates of dechlorination of priority pollutants.

Wetland plant uptake of desorption-resistant organic compounds from sediments.

Wetland plant uptake of 14C-labeled phenanthrene and chlorobenzene was investigated in greenhouse studies using sediment prepared to contain only the desorption-resistant fraction of the contaminant. Measurements of contaminant distribution in the plants and root-contaminant partition coefficients were conducted as well as estimates of the transpiration stream concentration of chlorobenzene and phenanthrene. Plant uptake of desorption-resistant phenanthrene and chlorobenzene occurred primarily in the root zone with total uptake ranging from 3.8 to 5.7% of the initial concentration in the sediment. Observed uptake of the compounds was remarkably similar despite wide differences in contaminant properties. A biphasic sorption isotherm was combined with a simple translocation model to predict plant uptake from two processes: root sorption and translocation. The model predicted the observed uptake well and may serve as an important tool for estimating plant uptake in sediments containing a desorption-resistant fraction. The potential implications of the existence of a finite, desorption-resistant pool of contaminants on phytoremediation of sediments are discussed.

Application of a dialysis sampler to monitor phytoremediation processes.

A cylindrical dialysis sampler (1.2 m in length; 5 cm in diameter) was designed and constructed to sample small-scale phytoremediation processes in the root zone of poplar trees. The study site was a 183-tree plantation of hybrid poplars located at Aberdeen Proving Ground, Maryland, at the J-Field Area of Concern. The grove was planted in 1996 to intercept a chlorinated solvent plume containing 1,1,2,2-tetrachloroethane (1,1,2,2-TeCA, trichloroethene (TCE) and daughter products. Two dialysis samplers were installed: one directly in the poplar grove (approximately 0.3 m from the trunk of a mature tree) and the other outside of the grove but in the plume. Data collected included concentrations of chlorinated VOCs, organic acids, chloroacetic acids, Cl-, and dissolved gases (ethane, ethene, CH4, CO2). At the control location, the VOC profile was dominated by cis-1,2-dichloroethene (cis-1,2-DCE) and trans-1,2-dichloroethene (trans-1,2-DCE) with concentrations ranging from 0.88-4.5 to 4.4-17.6 mg/L, respectively. Concentrations of VOCs were similar across the vertical profile. At the tree location, 1,1,2,2-TeCA and TCE were the dominant VOCs detected but as opposed to the control location were highly variable within the root zone, with the greatest variability associated with locations in the sampler where roots were observed. This highly variable profile at the tree location is indicative of VOC rhizosphere biodegradation and uptake near the active roots. This variability appears to be on the centimeter scale, emphasizing the importance of these high-resolution samplers for the study of rhizosphere influences.

Fate of perchlorate-contaminated water in upflow wetlands.

The potential of natural wetland systems to treat perchlorate-contaminated water was investigated in vertical upflow wetland columns planted with and without Bulrush (Scirpus sp.). In the absence of nitrate (NO3- -N <1mg/L), wetland columns were capable of removing ClO4- to levels below the detection limit (<4 microg/L) for a series of influent ClO4- (4, 8, 16, and 32 mg/L). At an influent ClO4- concentration of 32 mg/L, ClO4- breakthrough was observed with the increase in nitrate concentration. ClO4- and NO3- degradation rate constants (Kpc and KNO3- -N) were also determined using a 1-D transport model with dispersion. Kpc declined with the increase of influent ClO4- and NO3- -N concentration (6.49-0.42 day(-1) for unplanted columns, and 7.80-0.21 day(-1) for planted columns, respectively). KNO3- -N followed similar trends but was relatively higher than Kpc. Plant uptake was directly linked with ClO4- concentration in the rhizosphere, and the stem bio-concentration factor (BCF) was estimated to be 57. A mass balance indicated plant uptake accounted for 0-14.3% of initial ClO4- input. Microbial degradation played a more important role than plant uptake and transformation in ClO4- degradation in this wetland system. This study suggests that constructed wetlands may be a promising technology to treat perchlorate-contaminated waters.