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1.
BMC Genet ; 19(1): 44, 2018 07 12.
Article in English | MEDLINE | ID: mdl-30001200

ABSTRACT

Following publication of the original article [1], the authors reported the need for a more detailed acknowledgement of the source of the samples that were analyzed and their coordinates, which are discussed in the 'Methods' section of the article. This Correction provides an addition to the 'Methods' section, and a subsequently revised 'Acknowledgements' and 'Availability of data and materials' section.

2.
BMC Genet ; 19(1): 34, 2018 05 23.
Article in English | MEDLINE | ID: mdl-29792158

ABSTRACT

BACKGROUND: Snake melon (Cucumis melo var. flexuosus, "Faqqous") is a traditional and ancient vegetable in the Mediterranean area. A collection of landraces from 42 grower fields in Israel and Palestinian territories was grown and characterized in a "Common Garden" rain-fed experiment, at the morphological-horticultural and molecular level using seq-DArT markers. RESULTS: The different landraces ("populations") showed extensive variation in morphology and quantitative traits such as yield and femaleness, and clustered into four horticultural varieties. Yield was assessed by five harvests along the season, with middle harvests producing the highest yields. Yield correlated with early vigor, and with femaleness, but not with late vigor. At the molecular level, 2784 SNP were produced and > 90% were mapped to the melon genome. Populations were very polymorphic (46-72% of the markers biallelic in a 4 individuals sample), and observed heterozygosity was higher than the expected, suggesting gene flow among populations and extensive cross pollination among individuals in the field. Genetic distances between landraces were significantly correlated with the geographical distance between collecting sites, and with long term March precipitation average; variation in yield correlated with April temperature maxima. CONCLUSIONS: The extensive variation suggests that selection of local snake melon could result in yield improvement. Correlations between traits and climatic variables could suggest local adaptation of landraces to the diverse environment in which they evolved. This study stresses the importance of preserving this germplasm, and its potential for breeding better snake melons as an heirloom crop in our region.


Subject(s)
Crops, Agricultural/anatomy & histology , Crops, Agricultural/genetics , Cucumis melo/anatomy & histology , Cucumis melo/genetics , Plant Breeding , Genetic Variation , Phenotype , Quantitative Trait, Heritable , Selection, Genetic
3.
Environ Monit Assess ; 73(3): 237-51, 2002 Feb.
Article in English | MEDLINE | ID: mdl-11878633

ABSTRACT

Abstract. At three study sites, representing Mediterranean, semi-arid and mildly-arid climatic conditions, the effect of shrubs on the spatial patterns of soil moisture was studied. At each site soil moisture was measured, on hillslopes, at the vicinity of 8 shrubs. For each shrub the measurements have been taken at 3 microenvironments, i.e. under the shrub (US), at the margins of shrub (MS) and between shrubs (BS). At the microenvironments US and MS the measurements were taken at 3 directions: upslope, downslope and sideslope of the shrubs. At all sampling points soil samples were taken from 3 depths: 0-2, 2-5 and 5-10 cm. In addition, rock fragments cover percentage near the shrubs was determined. A soil moisture pattern was found, around each shrub, which is composed of a radial gradient and a downslope gradient. The radial gradient is expressed by soil moisture decreasing from the US microenvironment, in all directions, through the MS towards the BS microenvironment. The US microenvironment has a 'spatial advantage' of higher soil moisture content due to (1) relatively higher infiltration rate, (2) capture overland flow from the BS area upslope that shrub and (3) low evaporation rate because of the shading effect. The downslope gradient is expressed by decreasing soil moisture from the upslope direction of each shrub (MS and US microenvironments) towards the downslope direction of that shrub (MS and US microenvironments, respectively). This gradient is controlled by the relatively high content of rock fragments near the shrubs at their upslope direction. Such rock fragments spatial distribution is attributed to (1) the detachment and transport of rock fragments by sheep and goats trampling and (2) the effect of shrub on the continuity of overland flow and sediment transport. The effect of rock fragments is similar to that of shrubs regarding increasing infiltration and decreasing evaporation rate. The relatively high soil moisture at the upslope direction of each shrub enhances annuals growth producing a positive feedback loop: soil moisture--annuals growth--trampling. This sequence maintains the typical rock fragments spatial organization and contributes to the sustainability of the grazing system. At all the study sites at the US microenvironment there is a trend of decreasing soil moisture with increasing soil depth. At microenvironments MS and BS soil moisture increases with soil depth. The results are of great relevance for rehabilitation strategies as they suggest that in order to combat desertification in degraded semi-arid and mildly-arid areas, where the main land use is grazing, both shrubs and rock fragment should be kept at their present spatial distribution.


Subject(s)
Climate , Ecosystem , Environmental Monitoring , Soil , Water/analysis , Agriculture , Animals , Conservation of Natural Resources , Goats , Plants , Sheep
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