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1.
J Agric Food Chem ; 69(4): 1214-1223, 2021 Feb 03.
Article in English | MEDLINE | ID: mdl-33480684

ABSTRACT

A series of new fungicides that can inhibit the succinate dehydrogenase (SDH) was classified and named as SDH inhibitors by the Fungicide Resistance Action Committee in 2009. To develop more potential SDH inhibitors, we designed and synthesized a novel series of N-(substituted pyridine-4-yl)-1-(substituted phenyl)-5-trifluoromethyl-1H-pyrazole-4-carboxamide derivatives, 4a-4i, namely, 5a-5h, 6a-6h, and 7a-7j. The bioassay results demonstrated that some title compounds exhibited excellent antifungal activity against four tested phytopathogenic fungi (Gibberella zea, Fusarium oxysporum, Cytospora mandshurica, and Phytophthora infestans). The EC50 values were 1.8 µg/mL for 7a against G. zeae, 1.5 and 3.6 µg/mL for 7c against F. oxysporum and C. mandshurica, respectively, and 6.8 µg/mL for 7f against P. infestans. The SDH enzymatic activity testing revealed that the IC50 values of 4c, 5f, 7f, and penthiopyrad were 12.5, 135.3, 6.9, and 223.9 µg/mL, respectively. The molecular docking results of this series of title compounds with SDH model demonstrated that the compounds could completely locate inside of the pocket, the body fragment formed H bonds, and the phenyl ring showed a π-π interaction with Arg59, suggesting that these novel 5-trifluoromethyl-pyrazole-4-carboxamide derivatives might target SDH. These results could provide a benchmark for understanding the antifungal activity against the phytopathogenic fungus P. infestans and prompt us to discover more potent SDH inhibitors.


Subject(s)
Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Fungal Proteins/antagonists & inhibitors , Fungicides, Industrial/chemistry , Fungicides, Industrial/pharmacology , Pyrazoles/chemistry , Pyrazoles/pharmacology , Succinate Dehydrogenase/antagonists & inhibitors , Enzyme Inhibitors/chemical synthesis , Fungal Proteins/chemistry , Fungicides, Industrial/chemical synthesis , Fusarium/drug effects , Fusarium/enzymology , Molecular Docking Simulation , Quantitative Structure-Activity Relationship , Succinate Dehydrogenase/chemistry
2.
J Microbiol Biotechnol ; 30(5): 785-792, 2020 May 28.
Article in English | MEDLINE | ID: mdl-32482946

ABSTRACT

L-Theanine, found in green tea leaves has been shown to positively affect immunity and relaxation in humans. There have been many attempts to produce L-theanine through enzymatic synthesis to overcome the limitations of traditional methods. Among the many genes coding for enzymes in the L-theanine biosynthesis, glutamylmethylamide synthetase (GMAS) exhibits the greatest possibility of producing large amounts of production. Thus, GMAS from Methylovorus mays No. 9 was overexpressed in several strains including vectors with different copy numbers. BW25113(DE3) cells containing the pET24ma::gmas was selected for strains. The optimal temperature, pH, and metal ion concentration were 50°C, 7, and 5 mM MnCl2, respectively. Additionally, ATP was found to be an important factor for producing high concentration of L-theanine so several strains were tested during the reaction for ATP regeneration. Bakers yeast was found to decrease the demand for ATP most effectively. Addition of potassium phosphate source was demonstrated by producing 4-fold higher L-theanine. To enhance the conversion yield, GMAS was additionally overexpressed in the system. A maximum of 198 mM L-theanine was produced with 16.5 mmol/l/h productivity. The whole-cell reaction involving GMAS has greatest potential for scale-up production of L-theanine.


Subject(s)
Bacterial Proteins/metabolism , Carbon-Nitrogen Ligases/metabolism , Escherichia coli/metabolism , Glutamates/metabolism , Saccharomyces cerevisiae/metabolism , Adenosine Triphosphate/metabolism , Bacterial Proteins/genetics , Carbon-Nitrogen Ligases/genetics , Culture Media/chemistry , Culture Media/metabolism , Escherichia coli/genetics , Metabolic Engineering , Methylophilaceae/enzymology , Methylophilaceae/genetics
3.
Enzyme Microb Technol ; 127: 58-64, 2019 Aug.
Article in English | MEDLINE | ID: mdl-31088617

ABSTRACT

Cadaverine, also known as 1,5-pentanediamine, is an important platform chemical with a wide range of applications and can be produced either by fermentation or bioconversion. Bioconversion of cadaverine from l-lysine is the preferred method because of its many benefits, including rapid reaction time and an easy downstream process. In our previous study, we replaced pyridoxal-5-phosphate (PLP) with pyridoxal kinase (PdxY) along with pyridoxal (PL) because it could achieve 80% conversion with 0.4 M of l-lysine in 6 h. However, conversion was sharply decreased in the presence of high concentrations of l-lysine (i.e., 1 M), resulting in less than 40% conversion after several hours. In this study, we introduced an ATP regeneration system using polyphosphate kinase (ppk) into systems containing cadaverine decarboxylase (CadA) and PdxY for a sufficient supply of PLP, which resulted in enhanced cadaverine production. In addition, to improve transport efficiency, the use of surfactants was tested. We found that membrane permeabilization via hexadecyltrimethylammonium bromide (CTAB) increased the yield of cadaverine in the presence of high concentrations of l-lysine. By combining these two strategies, the ppk system and addition of CTAB, we enhanced cadaverine production up to 100% with 1 M of l-lysine over the course of 6 h.


Subject(s)
Adenosine Triphosphate/metabolism , Cadaverine/metabolism , Cetrimonium/metabolism , Escherichia coli/metabolism , Pyridoxal Phosphate/metabolism , Biotransformation , Escherichia coli/genetics , Phosphotransferases (Phosphate Group Acceptor)/metabolism
4.
Bioprocess Biosyst Eng ; 42(4): 603-610, 2019 Apr.
Article in English | MEDLINE | ID: mdl-30617415

ABSTRACT

Polyhydroxybutyrates (PHB) are biodegradable polymers that are produced by various microbes, including Ralstonia, Pseudomonas, and Bacillus species. In this study, a Vibrio proteolyticus strain, which produces a high level of polyhydroxyalkanoate (PHA), was isolated from the Korean marine environment. To determine optimal growth and production conditions, environments with different salinity, carbon sources, and nitrogen sources were evaluated. We found that the use of a medium containing 2% (w/v) fructose, 0.3% (w/v) yeast extract, and 5% (w/v) sodium chloride (NaCl) in M9 minimal medium resulted in high PHA content (54.7%) and biomass (4.94 g/L) over 48 h. Addition of propionate resulted in the production of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (P(HB-co-HV)) copolymer as propionate acts as a precursor for the HV unit. In these conditions, the bacteria produced poly(3-hydroxybutyrate-co-3-hydroxyvalerate) containing a 15.8% 3HV fraction with 0.3% propionate added as the substrate. To examine the possibility of using unsterilized media with high NaCl content for PHB production, V. proteolyticus was cultured in sterilized and unsterilized conditions. Our results indicated a higher growth, leading to a dominant population in unsterilized conditions and higher PHB production. This study showed the conditions for halophilic PHA producers to be later implemented at a larger scale.


Subject(s)
Aquatic Organisms , Polyhydroxyalkanoates/biosynthesis , Seawater/microbiology , Vibrio , Water Microbiology , Aquatic Organisms/growth & development , Aquatic Organisms/isolation & purification , Korea , Vibrio/genetics , Vibrio/isolation & purification
5.
Bioprocess Biosyst Eng ; 40(10): 1573-1580, 2017 Oct.
Article in English | MEDLINE | ID: mdl-28730324

ABSTRACT

Streptomyces, which produces many pharmaceutical antibiotics and anticancer agents, is a genus of soil-dwelling bacteria with numerous regulators that control both primary and secondary metabolism. NdgR is highly conserved in Streptomyces spp. and is known to be involved in antibiotic production, tolerance against shock and physical stress, nitrogen metabolism, leucine metabolism, and N-acetylglucosamine metabolism. As another function of NdgR, we report the involvement of NdgR in glycerol metabolism in S. coelicolor. Initially, a glycerol utilization operon containing gylCABX was found to be up-regulated in an ndgR deletion mutant (BG11) grown in N-acetylglucosamine solid minimal media compared with wild-type strain (M145). BG11 produced more antibiotics with a small amount of glycerol and increased glycerol utilization, yielding higher concentrations of lactate and acetate per cell. Moreover, fatty acid production was also changed in BG11 to produce longer chain fatty acids, phenolic compounds, alkanes, and fatty alcohols. Using a gel retardation assay, NdgR was found to bind the upstream region of gylC, working as a repressor. NdgR is a second regulator of a glycerol utilization operon, for which only one regulator, GylR was previously known.


Subject(s)
Bacterial Proteins/metabolism , Gene Expression Regulation, Bacterial/physiology , Glycerol/metabolism , Operon/physiology , Streptomyces coelicolor/metabolism , Transcription Factors/metabolism , Up-Regulation/physiology , Bacterial Proteins/genetics , Streptomyces coelicolor/genetics , Transcription Factors/genetics
6.
Bioprocess Biosyst Eng ; 40(5): 781-789, 2017 May.
Article in English | MEDLINE | ID: mdl-28204983

ABSTRACT

Polyhydroxyalkanoate (PHA) is a family of biodegradable polymers, and incorporation of different monomers can alter its physical properties. To produce the copolymer poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (P(3HB-co-3HV)) containing a high level of 3-hydroxyvalerate (3HV) by altering acetyl-CoA pool levels, we overexpressed an acetyl-CoA acetyltransferase (atoAD) in an engineered E. coli strain, YH090, carrying PHA synthetic genes bktB, phaB, and phaC. It was found that, with introduction of atoAD and with propionate as a co-substrate, 3HV fraction in PHA was increased up to 7.3-fold higher than a strain without atoAD expressed in trans (67.9 mol%). By the analysis of CoA pool concentrations in vivo and in vitro using HPLC and LC-MS, overexpression of AtoAD was shown to decrease the amount of acetyl-CoA and increase the propionyl-CoA/acetyl-CoA ratio, ultimately resulting in an increased 3HV fraction in PHA. Finally, synthesis of P(3HB-co-3HV) containing 57.9 mol% of 3HV was achieved by fed-batch fermentation of YJ101 with propionate.


Subject(s)
Acetyl-CoA C-Acetyltransferase/biosynthesis , Escherichia coli Proteins/biosynthesis , Escherichia coli/metabolism , Pentanoic Acids/metabolism , Polyesters/metabolism , Acetyl-CoA C-Acetyltransferase/genetics , Escherichia coli/genetics , Escherichia coli Proteins/genetics
7.
J Biotechnol ; 210: 38-43, 2015 Sep 20.
Article in English | MEDLINE | ID: mdl-26113216

ABSTRACT

Engineering enzyme substrate specificity is a promising approach that can expand the applicability of enzymes for the biocatalytic production of industrial chemicals and fuels. In this study, succinic semialdehyde reductase (AKR7A5) was engineered for the conversion of levulinic acid to 4-hydroxyvaleric acid. Levulinic acid is a derivative of cellulosic biomass, and 4-hydroxyvaleric acid is a potential precursor to bio-polymers and fuels. Therefore, the enzymatic conversion of levulinic acid to 4-hydroxyvaleric acid is of special significance in that this conversion could provide a meaningful basis for the bio-production of useful chemicals from cellulosic biomass. In engineering the substrate specificity of the AKR7A5, a rational design approach with the aid of enzyme-substrate interatomic contact analysis was applied. The Met13 residue was selected as a key mutation site, and substitutions of the residue with six hydrophobic amino acids were applied. As a result, four mutants with enhanced catalytic activity toward levulinic acid were obtained, and the most improved mutant, Met13Trp, exhibited a 7.0-fold increase in catalytic efficiency. Additionally, the structural effects of the positive mutations were investigated to analyze the structural basis for the enzyme substrate specificity with the target substrate.


Subject(s)
Aldehyde Reductase/metabolism , Levulinic Acids/metabolism , Mutagenesis, Site-Directed/methods , Valerates/metabolism , Aldehyde Reductase/chemistry , Aldehyde Reductase/genetics , Aldo-Keto Reductases , Animals , Biocatalysis , Catalytic Domain , Methionine/metabolism , Mice , Molecular Docking Simulation , Substrate Specificity
8.
J Biol Chem ; 290(27): 17029-40, 2015 Jul 03.
Article in English | MEDLINE | ID: mdl-25995454

ABSTRACT

The P-glycoprotein (P-gp) encoded by the MDR1 gene is a drug-exporting transporter located in the cellular membrane. P-gp induction is regarded as one of the main mechanisms underlying drug-induced resistance. Although there is great interest in the regulation of P-gp expression, little is known about its underlying regulatory mechanisms. In this study, we demonstrate that casein kinase 2 (CK2)-mediated phosphorylation of heat shock protein 90ß (Hsp90ß) and subsequent stabilization of PXR is a key mechanism in the regulation of MDR1 expression. Furthermore, we show that CK2 is directly activated by rifampin. Upon exposure to rifampin, CK2 catalyzes the phosphorylation of Hsp90ß at the Ser-225/254 residues. Phosphorylated Hsp90ß then interacts with PXR, causing a subsequent increase in its stability, leading to the induction of P-gp expression. In addition, inhibition of CK2 and Hsp90ß enhances the down-regulation of PXR and P-gp expression. The results of this study may facilitate the development of new strategies to prevent multidrug resistance and provide a plausible mechanism for acquired drug resistance by CK2-mediated regulation of P-gp expression.


Subject(s)
HSP90 Heat-Shock Proteins/metabolism , Rifampin/pharmacology , ATP Binding Cassette Transporter, Subfamily B/genetics , ATP Binding Cassette Transporter, Subfamily B/metabolism , Amino Acid Motifs , Casein Kinase II/chemistry , Casein Kinase II/genetics , Casein Kinase II/metabolism , Cell Line, Tumor , Gene Expression Regulation/drug effects , HSP90 Heat-Shock Proteins/chemistry , HSP90 Heat-Shock Proteins/genetics , Humans , Molecular Docking Simulation , Phosphorylation/drug effects , Pregnane X Receptor , Receptors, Steroid/genetics , Receptors, Steroid/metabolism , Rifampin/chemistry
9.
J Microbiol Biotechnol ; 24(10): 1319-26, 2014 Oct.
Article in English | MEDLINE | ID: mdl-25001557

ABSTRACT

Rapamycin, produced by the soil bacterium Streptomyces hygroscopicus, has the ability to suppress the immune system and is used as an antifungal, anti-inflammatory, antitumor, and immunosuppressive agent. In an attempt to increase the productivity of rapamycin, mutagenesis of wild-type Streptomyces hygroscopicus was performed using ultraviolet radiation, and the medium composition was optimized using glycerol (which is one of the cheapest starting substrates) by applying Plackett-Burman design and response surface methodology. Plackett-Burman design was used to analyze 14 medium constituents: M100 (maltodextrin), glycerol, soybean meal, soytone, yeast extract, (NH4)2SO4, L-lysine, KH2PO4, K2HPO4, NaCl, FeSO4·7H2O, CaCO3, 2-(N-morpholino) ethanesulfonic acid, and the initial pH level. Glycerol, soytone, yeast extract, and CaCO3 were analyzed to evaluate their effect on rapamycin production. The individual and interaction effects of the four selected variables were determined by Box-Behnken design, suggesting CaCO3, soytone, and yeast extract have negative effects, but glycerol was a positive factor to determine rapamycin productivity. Medium optimization using statistical design resulted in a 45% (220.7 ± 5.7 mg/l) increase in rapamycin production for the Streptomyces hygroscopicus mutant, compared with the unoptimized production medium (151.9 ± 22.6 mg/l), and nearly 588% compared with wildtype Streptomyces hygroscopicus (37.5 ± 2.8 mg/l). The change in pH showed that CaCO3 is a critical and negative factor for rapamycin production.


Subject(s)
Anti-Infective Agents/metabolism , Anti-Inflammatory Agents/metabolism , Antineoplastic Agents/metabolism , Culture Media/chemistry , Glycerol/metabolism , Sirolimus/metabolism , Streptomyces/metabolism , Hydrogen-Ion Concentration , Sodium Chloride/metabolism , Streptomyces/radiation effects , Ultraviolet Rays
10.
Appl Biochem Biotechnol ; 172(3): 1639-51, 2014 Feb.
Article in English | MEDLINE | ID: mdl-24242072

ABSTRACT

SCO0948 was found to be the single open reading frame annotated to encode an α-mannosidase (AM1) in Streptomyces coelicolor M145. To characterize the protein, we overexpressed SCO0948 in Escherichia coli BL21(DE3). Recombinant AM1, with a molecular weight of 110 kDa, exhibited α-mannosidase activity toward 4-nitrophenyl-α-D-mannopyranoside with a K m of 4.61 mM, a V(max) of 101.6 mM/min, and a specific activity of 47.96 U/mg. Treatment of ovalbumin, a glycoprotein, with AM1 resulted in partial deglycosylation, as assessed by glycostaining and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. The S. coelicolor deletion mutant for SCO0948 failed to produce α-mannosidase activity, confirming AM1 as the only α-mannosidase in S. coelicolor M145. Interestingly, the deletion mutant and a complementation strain produced lower levels of the antibiotics actinorhodin and undecylprodigiosin in glucose minimal media. The results indicate that AM1 as an α-mannosidase influences deglycosylation and antibiotic production in S. coelicolor M145.


Subject(s)
Recombinant Proteins/metabolism , Streptomyces coelicolor/enzymology , alpha-Mannosidase/chemistry , Anti-Bacterial Agents/biosynthesis , Anti-Bacterial Agents/chemistry , Escherichia coli , Glucosides/chemistry , Glycosylation , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , alpha-Mannosidase/genetics , alpha-Mannosidase/metabolism
11.
Toxicon ; 71: 159-65, 2013 Sep.
Article in English | MEDLINE | ID: mdl-23747275

ABSTRACT

In the process of evaluating the growth of Streptomyces coelicolor on rich media such as blood agar, we found that S. coelicolor a non-pathogenic, well-known antibiotic producer had the ability to grow and produce a prominent hemolytic zone. By comparing the growth with an agarase gene mutant of S. coelicolor, a similar prominent hemolytic zone was found to develop due to the organism's hemolytic activity. After the confirmation of hemolytic activity from S. coelicolor, the genome was searched for hemolysin-coding genes; consequently, SCO1782, SCO2534, and SCO3882 were identified, whose products were annotated as a putative, membrane, and hypothetical proteins, respectively. Functional characterization of all the recombinant proteins expressed in Escherichia coli BL21(DE3) revealed that only SCO1782 exhibited hemolytic activity. This S. coelicolor protein, designated as S-hemolysin, showed sequence similarity toward hemolysins from Brachyspira hyodysenteriae (35%) and Mycobacterium tuberculosis (62%). Recombinant hemolysin exhibited activity against sheep blood erythrocytes and cytolytic activity against human fibroblast cells. Deletion of SCO1782 resulted in complete loss of hemolysin activity in S. coelicolor.


Subject(s)
Bacterial Proteins/genetics , Genes, Bacterial , Hemolysin Proteins/genetics , Streptomyces coelicolor/genetics , Animals , Anti-Bacterial Agents/metabolism , Bacterial Proteins/chemistry , Cloning, Molecular , Culture Media , Erythrocytes/drug effects , Erythrocytes/metabolism , Escherichia coli/genetics , Fibroblasts/drug effects , Fibroblasts/metabolism , Gene Deletion , Hemolysin Proteins/chemistry , Hemolytic Agents/pharmacology , Humans , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Sheep , Streptomyces coelicolor/chemistry
12.
Bioorg Med Chem Lett ; 23(12): 3614-9, 2013 Jun 15.
Article in English | MEDLINE | ID: mdl-23659856

ABSTRACT

Although phosphorylation of chloramphenicol has been shown to occur in the chloramphenicol producer, Streptomyces venezuelae, there are no reports on the existence of chloramphenicol phosphorylase in other Streptomyces species. In the present study, we report the modification of chloramphenicol by a recombinant protein, designated as Yhr2 (encoded by SAV_877), from Streptomyces avermitilis MA4680. Recombinant Yhr2 was expressed in Escherichia coli BL21 (DE3) and the cells expressing this recombinant protein were shown to phosphorylate chloramphenicol to a 3'-O-phosphoryl ester derivative, resulting in an inactivated form of the antibiotic. Expression of yhr2 conferred chloramphenicol resistance to E. coli cells up to 25 µg/mL and in an in vitro reaction, adenosine triphosphate (ATP), guanosine triphosphate (GTP), adenosine diphosphate (ADP) and guanosine diphosphate (GDP) were shown to be the phosphate donors for phosphorylation of chloramphenicol. This study highlights that antibiotic resistance conferring genes could be easily expressed and functionalized in other organisms that do not produce the respective antibiotic.


Subject(s)
Chloramphenicol/metabolism , Phosphotransferases/metabolism , Streptomyces/metabolism , Amino Acid Sequence , Animals , Escherichia coli/genetics , Escherichia coli/metabolism , Humans , Molecular Sequence Data , Phosphorylation , Phosphotransferases/genetics , Recombinant Proteins/metabolism , Streptomyces/enzymology , Streptomyces/genetics
13.
Appl Microbiol Biotechnol ; 97(15): 6823-33, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23525887

ABSTRACT

Several reports state that three architectural units, including integration host factor, leucyl aminopeptidase (PepA), and purine regulator, are involved in transcriptional process with RNA polymerase in Escherichia coli. Similarly, Streptomyces species possess the same structural units. We previously identified a protein, Streptomyces integration host factor (sIHF), involved in antibiotic production and sporulation. Subsequently, the function of PepA (SCO2179) was examined in detail. PepA is highly conserved among various Streptomyces spp., but it has not yet been characterized in Streptomyces coelicolor. While it is annotated as a putative leucyl aminopeptidase because it contains a peptidase M17 superfamily domain, this protein did not exhibit leucyl aminopeptidase activity. SCO2179 deletion mutant showed increased actinorhodin production and sporulation, as well as more distinct physiological differences, particularly when cultured on N-acetylglucosamine (GlcNAc) minimal media. The results of two-dimensional gel analysis and reverse transcription PCR showed that the SCO2179 deletion increased protein and mRNA levels of ftsZ, ssgA, and actinorhodin (ACT)-related genes such as actII-ORF4, resulting in increased actinorhodin production and spore formation in minimal media containing GlcNAc.


Subject(s)
Leucyl Aminopeptidase/metabolism , Spores, Bacterial , Streptomyces coelicolor/enzymology , Amino Acid Sequence , Anthraquinones/metabolism , Base Sequence , DNA Primers , Leucyl Aminopeptidase/chemistry , Leucyl Aminopeptidase/genetics , Microscopy, Electron, Scanning , Molecular Sequence Data , Polymerase Chain Reaction/methods , RNA, Messenger/genetics , Sequence Homology, Amino Acid , Streptomyces coelicolor/physiology
14.
Appl Biochem Biotechnol ; 170(2): 359-69, 2013 May.
Article in English | MEDLINE | ID: mdl-23526111

ABSTRACT

Amylases are important industrial enzymes that have been applied widely in the food, detergent, and pulp industries and fermentation processes. In the present study, a gene encoding an alpha-amylase from the genomic DNA library of Paenibacillus sp. was identified and characterized. The amylase gene designated amy1 was shown to consist of 1,980 bp and shared sequence identity towards α-amylase genes from other Bacillus sp. The deduced amino acid sequence for Amy1 indicated 80 % sequence identity with other Bacillus strains. Heterologous expression of recombinant Amy1 in Escherichia coli BL21(DE3) facilitated the recovery of this protein in soluble form. Enzyme kinetic data revealed Amy1 to have a K m of 23.83 mg/mL and K cat of 48.74 min(-1) and K cat /K m of 2 min(-1) mg(-1) mL(-1) for starch. The activity of this protein was found to be enhanced by Mn(2+), and furthermore, Amy1 remained active at a broad pH range (4-10) and temperature (30-90 °C). The ability of Amy1 to act on food waste under broad temperature and pH conditions, together with its ability to produce simple sugars, shows many advantages for further application in the food industry.


Subject(s)
Bacterial Proteins/metabolism , Paenibacillus/enzymology , RNA, Bacterial/analysis , Soil Microbiology , alpha-Amylases/metabolism , Amino Acid Sequence , Bacterial Proteins/genetics , Bacterial Proteins/isolation & purification , Enzyme Activation , Enzyme Stability , Escherichia coli/genetics , Escherichia coli/metabolism , Gene Library , Genes, Bacterial , Hydrogen-Ion Concentration , Hydrolysis , Oryza , Paenibacillus/genetics , Paenibacillus/isolation & purification , Polysaccharides/metabolism , RNA, Bacterial/genetics , RNA, Ribosomal, 16S/genetics , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Temperature , alpha-Amylases/genetics , alpha-Amylases/isolation & purification
15.
Bioresour Technol ; 134: 377-80, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23489571

ABSTRACT

Enzymatic reduction of levulinic acid (LA) was performed for the synthesis of 4-hydroxyvaleric acid (4HV)--a monomer of bio-polyester and a precursor of bio-fuels--using 3-hydroxybutyrate dehydrogenase (3HBDH) from Alcaligenes faecalis. Due to the catalytic inactivity of the wild-type enzyme toward LA, engineering of the substrate specificity of the enzyme was performed. A rational design approach with molecular docking simulation was applied, and a double mutant, His144Leu/Trp187Phe, which has catalytic activity (kcat/Km=578.0 min(-1) M(-1)) toward LA was generated. Approximately 57% conversion of LA to 4HV was achieved with this double mutant in 24 h, while no conversion was achieved with the wild-type enzyme.


Subject(s)
Alcaligenes/enzymology , Hydroxybutyrate Dehydrogenase/metabolism , Levulinic Acids/metabolism , Protein Engineering/methods , Kinetics , Molecular Docking Simulation , Mutant Proteins/metabolism , Mutation/genetics , Oxidation-Reduction , Substrate Specificity , Valerates/metabolism
16.
J Microbiol Biotechnol ; 22(10): 1324-9, 2012 Oct.
Article in English | MEDLINE | ID: mdl-23075781

ABSTRACT

Phosphomannomutase (ManB) is involved in the biosynthesis of GDP-mannose, which is vital for numerous processes such as synthesis of carbohydrates, production of alginates and ascorbic acid, and post-translational modification of proteins. Here, we discovered that a deletion mutant of manB (BG101) in Streptomyces coelicolor (S. coelicolor) showed higher sensitivity to bacteriostatic chloramphenicol (CM) than the wild-type strain (M145), along with decreased production of CM metabolites. Deletion of manB also decreased the mRNA expression level of drug efflux pumps (i.e., cmlR1 and cmlR2) in S. coelicolor, resulting in increased sensitivity to CM. This is the first report on changes in antibiotic sensitivity to CM by deletion of one glycolysis-related enzyme in S. coelicolor, and the results suggest different approaches for studying the antibiotic-resistant mechanism and its regulation.


Subject(s)
Bacterial Proteins/metabolism , Chloramphenicol/pharmacology , Mannose-6-Phosphate Isomerase/metabolism , Multienzyme Complexes/metabolism , Nucleotidyltransferases/metabolism , Streptomyces coelicolor/enzymology , Anti-Bacterial Agents/pharmacology , Bacterial Proteins/genetics , Chromatography, High Pressure Liquid , Enzyme Activation , Escherichia coli/enzymology , Escherichia coli/genetics , Gene Deletion , Gene Expression Regulation, Bacterial , Gene Expression Regulation, Enzymologic , Genes, Bacterial , Genetic Complementation Test , Mannose-6-Phosphate Isomerase/genetics , Microbial Sensitivity Tests/methods , Microbial Viability , Multienzyme Complexes/genetics , Nucleotidyltransferases/genetics , Phosphoglucomutase/genetics , Phosphoglucomutase/metabolism , Phosphorylation , Phosphotransferases (Phosphomutases)/genetics , Phosphotransferases (Phosphomutases)/metabolism , RNA, Messenger/genetics , RNA, Messenger/metabolism , Streptomyces coelicolor/drug effects , Streptomyces coelicolor/genetics
17.
Microb Cell Fact ; 11: 81, 2012 Jun 14.
Article in English | MEDLINE | ID: mdl-22697884

ABSTRACT

A cytochrome P450 (CYP) enzyme, 3'-daidzein hydroxylase, CYP105D7 (3'-DH), responsible for daidzein hydroxylation at the 3'-position, was recently reported. CYP105D7 (3'-DH) is a class I type of CYP that requires electrons provided through electron transfer proteins such as ferredoxin and ferredoxin reductase. Presently, we constructed an artificial CYP in order to develop a reaction host for the production of a hydroxylated product. Fusion-mediated construction with the reductase domain from self-sufficient CYP102D1 was done to increase electron transfer efficiency and coupling with the oxidative process. An artificial self-sufficient daidzein hydroxylase (3'-ASDH) displayed distinct spectral properties of both flavoprotein and CYP. The fusion enzyme catalyzed hydroxylation of daidzein more efficiently, with a k(cat)/K(m) value of 16.8 µM(-1) min(-1), which was about 24-fold higher than that of the 3'-DH-camA/B reconstituted enzyme. Finally, a recombinant Streptomyces avermitilis host for the expression of 3'-ASDH and production of the hydroxylated product was developed. The conversion that was attained (34.6%) was 5.2-fold higher than that of the wild-type.


Subject(s)
Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Cytochrome P-450 Enzyme System/chemistry , Cytochrome P-450 Enzyme System/genetics , Isoflavones/metabolism , Protein Engineering , Streptomyces/enzymology , Bacterial Proteins/metabolism , Biocatalysis , Cytochrome P-450 Enzyme System/metabolism , Hydroxylation , Kinetics , Protein Structure, Tertiary , Streptomyces/chemistry , Streptomyces/genetics
18.
J Chromatogr B Analyt Technol Biomed Life Sci ; 893-894: 177-81, 2012 Apr 15.
Article in English | MEDLINE | ID: mdl-22459405

ABSTRACT

Nucleotide diphosphate (NDP) sugars are widely present in antibiotics and glycoconjugates, such as protein- and lipid-linked oligosaccharides, where they act as substrates for glycosyltransferase in eukaryotes and prokaryotes. Among NDP sugars, NDP-4-keto sugars are key intermediates in the synthesis of structurally diverse NDP sugars with different functional groups. However, the structural identification of the NDP-4-keto sugars via mass spectrometry (electrospray ionization-mass spectrometry (ESI-MS)) continues to be a challenge because of the carbonyl group in these sugars interferes with ionization process. In this study, we evaluated various hydroxylamine compounds for the derivatization of NDP-4-keto sugars, so that the detection of the sugars by ESI-MS is more efficient. As a result, O-(2,3,4,5,6-pentafluorobenzyl)hydroxylamine was found to be the most effective tagging molecule for the detection of NDP-4-keto sugars without being interfered by original MS. This method can be used for identifying NDP-4-keto sugars such as thymidine diphosphate (TDP)-, adenosine diphosphate (ADP)-, uridine diphosphate (UDP)-, and cytosine diphosphate (CDP)-4-keto sugars as well as new NDP-4-keto-dehydratases.


Subject(s)
Ketoses/chemistry , Nucleoside Diphosphate Sugars/chemistry , Spectrometry, Mass, Electrospray Ionization/methods , Hydroxylamines/chemistry
19.
Appl Microbiol Biotechnol ; 96(1): 113-21, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22246527

ABSTRACT

γ-Butyrolactones in Streptomyces are well recognized as bacterial hormones, and they affect secondary metabolism of Streptomyces. γ-Butyrolactone receptors are considered important regulatory proteins, and various γ-butyrolactone synthases and receptors have been reported in Streptomyces. Here, we characterized a new regulator, SCO0608, that interacted with SCB1 (γ-butyrolactone of Streptomyces coelicolor) and bound to the scbR/A and adpA promoters. The SCO0608 protein sequences are not similar to those of any known γ-butyrolactone binding proteins in Streptomyces such as ScbR from S. coelicolor or ArpA from Streptomyces griseus. Interestingly, SCO0608 functions as a repressor of antibiotic biosynthesis and spore formation in R5 complex media. We showed the existence of another type of γ-butyrolactone receptor in Streptomyces, and this SCO0608 was named ScbR-like γ-butyrolactone binding regulator (SlbR) in S. coelicolor.


Subject(s)
Protein Interaction Mapping , Receptors, GABA-A/genetics , Receptors, GABA-A/metabolism , Repressor Proteins/genetics , Repressor Proteins/metabolism , Streptomyces coelicolor/genetics , Streptomyces coelicolor/metabolism , 4-Butyrolactone/metabolism , DNA, Bacterial/metabolism , Promoter Regions, Genetic , Protein Binding , Sequence Homology, Amino Acid , Streptomyces griseus/genetics
20.
Appl Microbiol Biotechnol ; 93(4): 1685-93, 2012 Feb.
Article in English | MEDLINE | ID: mdl-21952939

ABSTRACT

Phosphomannose isomerases (PMIs) in bacteria and fungi catalyze the reversible conversion of D-fructose-6-phosphate to D-mannose-6-phosphate during biosynthesis of GDP-mannose, which is the main intermediate in the mannosylation of important cell wall components, glycoproteins, and certain glycolipids. In the present study, the kinetic parameters of PMI from Streptomyces coelicolor were obtained, and its function on antibiotic production and sporulation was studied. manA (SCO3025) encoding PMI in S. coelicolor was deleted by insertional inactivation. Its mutant (S. coelicolor∆manA) was found to exhibit a bld-like phenotype. Additionally, S. coelicolor∆manA failed to produce the antibiotics actinorhodin and red tripyrolle undecylprodigiosin in liquid media. To identify the function of manA, the gene was cloned and expressed in Escherichia coli BL21 (DE3). The purified recombinant ManA exhibited PMI activity (K(cat)/K(m) (mM(-1) s(-1) = 0.41 for D-mannose-6-phosphate), but failed to show GDP-D-mannose pyrophosphorylase [GMP (ManC)] activity. Complementation analysis with manA from S. coelicolor or E. coli resulted in the recovery of bld-like phenotype of S. coelicolor∆manA. SCO3026, another ORF that encodes a protein with sequence similarity towards bifunctional PMI and GMP, was also tested for its ability to function as an alternate ManA. However, the purified protein of SCO3026 failed to exhibit both PMI and GMP activity. The present study shows that enzymes involved in carbohydrate metabolism could control cellular differentiation as well as the production of secondary metabolites.


Subject(s)
Anti-Bacterial Agents/biosynthesis , Gene Deletion , Mannose-6-Phosphate Isomerase/genetics , Mannose-6-Phosphate Isomerase/metabolism , Spores, Bacterial/growth & development , Streptomyces coelicolor/enzymology , Anthraquinones/metabolism , Cloning, Molecular , Escherichia coli/genetics , Gene Expression , Genetic Complementation Test , Kinetics , Mutagenesis, Insertional , Prodigiosin/analogs & derivatives , Prodigiosin/biosynthesis , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Streptomyces coelicolor/cytology , Streptomyces coelicolor/genetics , Streptomyces coelicolor/metabolism
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