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1.
Intern Med J ; 36(4): 256-9, 2006 Apr.
Article in English | MEDLINE | ID: mdl-16640744

ABSTRACT

This study investigated issues raised in qualitative data from our previous studies of health professionals and community members, which suggested that being opposed to euthanasia legislation did not necessarily equate to being anti-euthanasia per se. A postal survey of 1002 medical practitioners, 1000 nurses and 1200 community members was undertaken. In addition to a direct question on changing the law to allow active voluntary euthanasia (AVE), four statements assessed attitudes to euthanasia with or without a change in legislation. Responses were received from 405 doctors (43%), 429 nurses (45%) and 405 community members (38%). Compared with previous studies there was a slight increase in support for a change in the law from medical practitioners, a slight decrease in support from community members and almost no change among nurses. Different interpretations of the results of the four attitude questions are possible, depending on the perspective of the interpreter.


Subject(s)
Attitude of Health Personnel , Euthanasia/legislation & jurisprudence , Public Opinion , Adult , Attitude to Health , Euthanasia/ethics , Female , Humans , Male , Middle Aged , Queensland , Surveys and Questionnaires
2.
Protein Eng Des Sel ; 18(9): 435-44, 2005 Sep.
Article in English | MEDLINE | ID: mdl-16087651

ABSTRACT

The tenth human fibronectin type three domain ((10)Fn3) is a small (10 kDa), extremely stable and soluble protein with an immunoglobulin-like fold, but without cysteine residues. Selections from (10)Fn3-based libraries of proteins with randomized loops have yielded high-affinity, target-specific antibody mimics. However, little is known about the biophysical properties of such antibody mimics, which will determine their suitability for in vitro and medical applications. We characterized target binding and biophysical properties of two related (10)Fn3-based antibody mimics that bind vascular endothelial growth factor receptor two (VEGF-R2). The first antibody mimic, which has a dissociation constant (K(d)) of 13 nM, is highly stable [melting temperature (T(m))=62 degrees C] and soluble, whereas the second, which binds VEGF-R2 with 40 x higher affinity, is less stable (T(m) < 40 degrees C) and relatively insoluble. We used our understanding of these two (10)Fn3 derivatives and of wild-type (10)Fn3 structure to engineer the next generation of antibody mimics, which have an improved combination of high affinity (K(d)=0.59 nM), stability (T(m)=53 degrees C) and solubility. Our findings illustrate that (10)Fn3-based antibody mimics can be engineered for favorable biophysical properties even when 20% of the wild-type (10)Fn3 sequence is mutated in order to satisfy target-binding requirements.


Subject(s)
Antibodies/chemistry , Fibronectins/immunology , Molecular Mimicry , Protein Engineering , Vascular Endothelial Growth Factor Receptor-2/metabolism , Amino Acid Sequence , Antibodies/genetics , Antibodies/metabolism , Hot Temperature , Humans , Mutagenesis, Site-Directed , Protein Binding , Protein Denaturation , Solubility , Thermodynamics
3.
Protein Sci ; 10(12): 2419-25, 2001 Dec.
Article in English | MEDLINE | ID: mdl-11714909

ABSTRACT

Sorcin is a 22 kD calcium-binding protein that is found in a wide variety of cell types, such as heart, muscle, brain and adrenal medulla. It belongs to the penta-EF-hand (PEF) protein family, which contains five EF-hand motifs that associate with membranes in a calcium-dependent manner. Prototypic members of this family are the calcium-binding domains of calpain, such as calpain dVI. Full-length human sorcin has been crystallized in the absence of calcium and the structure determined at 2.2 A resolution. Apart from an extended N-terminal portion, the sorcin molecule has a globular shape. The C-terminal domain is predominantly alpha-helical, containing eight alpha-helices and connecting loops incorporating five EF hands. Sorcin forms dimers through the association of the unpaired EF5, confirming this as the mode of association in the dimerization of PEF proteins. Comparison with calpain dVI reveals that the general folds of the individual EF-hand motifs are conserved, especially that of EF1, the novel EF-hand motif characteristic of the family. Detailed structural comparisons of sorcin with other members of PEF indicate that the EF-hand pair EF1-EF2 is likely to correspond to the two physiologically relevant calcium-binding sites and that the calcium-induced conformational change may be modest and localized within this pair of EF-hands. Overall, the results derived from the structural observations support the view that, in sorcin, calcium signaling takes place through the first pair of EF-hands.


Subject(s)
Calcium-Binding Proteins/chemistry , Amino Acid Motifs , Amino Acid Sequence , Annexins/chemistry , Calpain/chemistry , Crystallography, X-Ray , Dimerization , EF Hand Motifs , Humans , Models, Molecular , Molecular Sequence Data , Protein Conformation , Protein Folding , Protein Structure, Secondary , Protein Structure, Tertiary , Sequence Homology, Amino Acid
4.
J Prosthodont ; 10(3): 154-9, 2001 Sep.
Article in English | MEDLINE | ID: mdl-11641843

ABSTRACT

PURPOSE: This study investigated the effects of implant proximity on inter-implant bone height, density, and osseointegration using digital radiography and histology. MATERIALS AND METHODS: After a feasibility study, a total of 80 endosteal implants were placed in 20 New Zealand White Rabbit tibias. With the aid of a surgical jig, four 8.5-mm implants were placed in the medial aspect of the tibial crest at inter-implant distances of approximately 1, 1.5, and 3 mm. Standardized digital radiographs using a paralleling device were made immediately after placement of implants. Implants were allowed to osseointegrate for 90 days. After this healing period, the animals were sacrificed, and the standardized radiographs were repeated. The tibias were harvested, processed, and invested in epoxy. Sagittal sections were made from each specimen for histologic evaluation. The initial and postmortem digital radiographs were evaluated for inter-implant distances, vertical bone height changes over time and between implant pairs, and bone density changes over time and between implant pairs using a computer image analysis program and computer statistics program. RESULTS: The actual inter-implant distances were consistent in a range of 0.2 mm. Bone height increased significantly from presurgical levels at all 3 locations (p < .0005). Repeated measures analysis of variance comparing change in bone height at the 3 implant pair distances showed significant differences among the 3 (p = .002). Paired t tests showed that the amount of bone growth at the 1-mm separation site was significantly greater than the 1.5-mm site (p = .026) and the 3-mm site (p = .001), whereas bone growth at the 1.5- and 3-mm sites did not show significant differences (p = .162). A repeated measures analysis of variance comparing change in bone density showed no significant differences (p > .05) among the 3 inter-implant distances for either the 8-mm position (approximately crestal bone height) or the 6-mm position (approximately 2 mm subcrestal). CONCLUSION: Within the limits of this study, it seems placing implants closely together does not adversely affect bone height or density. Conversely, it seems that placing implants closer together may increase bone growth.


Subject(s)
Bone and Bones/surgery , Dental Implantation, Endosseous/methods , Dental Implants , Analysis of Variance , Animals , Bone Density , Bone and Bones/diagnostic imaging , Bone and Bones/pathology , Bone and Bones/physiopathology , Epoxy Resins , Feasibility Studies , Image Processing, Computer-Assisted , Models, Animal , Osseointegration , Osteogenesis/physiology , Pilot Projects , Plastic Embedding , Rabbits , Radiographic Image Enhancement , Statistics as Topic , Tibia , Wound Healing
5.
Med J Aust ; 175(4): 205-10, 2001 Aug 20.
Article in English | MEDLINE | ID: mdl-11587281

ABSTRACT

Teaching ethics incorporates teaching of knowledge as well as skills and attitudes. Each of these requires different teaching and assessment methods. A core curriculum of ethics knowledge must address both the foundations of ethics and specific ethical topics. Ethical skills teaching focuses on the development of ethical awareness, moral reasoning, communication and collaborative action skills. Attitudes that are important for medical students to develop include honesty, integrity and trustworthiness, empathy and compassion, respect, and responsibility, as well as critical self-appraisal and commitment to lifelong education.


Subject(s)
Curriculum , Education, Medical, Undergraduate , Ethics, Medical/education , Schools, Medical , Teaching , Australia , Humans , New Zealand
6.
Mol Cell ; 8(2): 291-301, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11545732

ABSTRACT

To elucidate the mechanism through which MAPK signaling regulates the MyoD family of transcription factors, we investigated the role of the signaling intermediate MEK1 in myogenesis. Transfection of activated MEK1 strongly repressed gene activation and myogenic conversion by the MyoD family. This repression was not mediated by direct phosphorylation of MyoD or by changes in MyoD stability or subcellular distribution. Deletion mapping revealed that MEK1-mediated repression required the MyoD amino-terminal transactivation domain. Moreover, activated MEK1 was nuclearly localized and bound a complex containing MyoD in a manner that is dependent on the presence of the MyoD amino terminus. Together, these data demonstrate that MEK1 signaling has a strong negative effect on MyoD activity via a novel mechanism involving binding of MEK1 to the nuclear MyoD transcriptional complex.


Subject(s)
MAP Kinase Signaling System/physiology , Mitogen-Activated Protein Kinase Kinases/metabolism , Muscle, Skeletal/physiology , MyoD Protein/metabolism , Protein Serine-Threonine Kinases/metabolism , Transcriptional Activation/genetics , Animals , Cell Differentiation/physiology , Cell Fractionation , Cells, Cultured , Fibroblasts/physiology , Genes, Reporter/genetics , Immunoblotting , MAP Kinase Kinase 1 , Mice , Microscopy, Fluorescence , Muscle Development , Muscle, Skeletal/cytology , Muscle, Skeletal/growth & development , MyoD Protein/genetics , Nuclear Proteins/metabolism , Precipitin Tests , Protein Binding , Protein Structure, Tertiary , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Transfection
7.
J Med Chem ; 44(19): 3054-8, 2001 Sep 13.
Article in English | MEDLINE | ID: mdl-11543673

ABSTRACT

A streamlined five-step chemical synthesis of rationally designed, simplified 3-aryltrioxane 8a is described. A noteworthy feature of this synthetic scheme is use of air rather than expensive molecular oxygen as the source of the pharmacologically critical peroxide unit in trioxane 8a. This simplified acetal trioxane carboxylic acid 8a is thermally stable, and it is hydrolytically stable in water even at 40 degrees C and pH 7.4 for at least 7 days. Preclinical evaluation of this water-soluble synthetic trioxane 8a in rodents shows it to have at least as good a therapeutic index (efficacy/toxicity) as that of water-soluble semisynthetic trioxane artelinic acid (5).


Subject(s)
Antimalarials/chemical synthesis , Benzoates/chemical synthesis , Bridged Bicyclo Compounds, Heterocyclic/chemical synthesis , Heterocyclic Compounds, 3-Ring/chemical synthesis , Animals , Antimalarials/chemistry , Antimalarials/pharmacology , Antimalarials/toxicity , Benzoates/chemistry , Benzoates/pharmacology , Benzoates/toxicity , Bridged Bicyclo Compounds, Heterocyclic/chemistry , Bridged Bicyclo Compounds, Heterocyclic/pharmacology , Bridged Bicyclo Compounds, Heterocyclic/toxicity , Drug Evaluation, Preclinical , Drug Storage , Heterocyclic Compounds, 3-Ring/chemistry , Heterocyclic Compounds, 3-Ring/pharmacology , Heterocyclic Compounds, 3-Ring/toxicity , Male , Mice , Plasmodium berghei/drug effects , Rats , Rats, Sprague-Dawley , Structure-Activity Relationship
8.
Pest Manag Sci ; 57(9): 844-51, 2001 Sep.
Article in English | MEDLINE | ID: mdl-11561412

ABSTRACT

A series of novel (hetero) aryloxylepidine derivatives was devised as hybrid structures of the phenoxyquinoline and phenethoxyquin(az)oline fungicides. Synthesis of these targets required the development of several new routes to derivatised 4-hydroxymethylquinolines, and subsequent coupling with phenols or haloarenes. The aryloxylepidines generally showed moderate broad-spectrum fungicidal activity across several diseases of cereals. Substitution of the quinoline ring with chlorine at the 7- and/or 5-positions gave molecules with high levels of protectant activity against Erysiphe graminis f sp tritici (powdery mildew of wheat), but this did not improve the level of fungicidal activity against other diseases. In vitro activity against mitochondrial electron transport complex I (MET) derived from Ustilago maydis showed that 8-fluorolepidine analogues were moderately active at this target site, while the more fungicidally active 7- and 5,7-substituted compounds were inactive. This indicates that MET is not the primary target of these highly active powdery mildewicides.


Subject(s)
Ascomycota/drug effects , Fungicides, Industrial/chemical synthesis , Quinazolines/chemical synthesis , Ustilago/drug effects , Electron Transport/drug effects , Fungicides, Industrial/pharmacology , Mitochondria/drug effects , Molecular Structure , Poaceae/microbiology , Quinazolines/pharmacology
9.
Biochemistry ; 40(30): 8962-70, 2001 Jul 31.
Article in English | MEDLINE | ID: mdl-11467958

ABSTRACT

A wide variety of viruses require the transient presence of scaffolding proteins to direct capsid assembly. In the case of bacteriophage P22, a model in which the scaffolding protein selectively stabilizes on-pathway growing intermediates has been proposed. The stoichiometry and thermodynamics of binding of the bacteriophage P22 scaffolding protein within the procapsid were analyzed by light scattering and isothermal titration calorimetry. Calorimetric experiments carried out between 10 and 37 degrees C were consistent with the presence of at least two distinct populations of binding sites, in agreement with kinetic evidence obtained by a light scattering assay. Binding to the high-affinity sites occurred at 20 degrees C with a stoichiometry of approximately 60 scaffolding molecules per procapsid and an apparent K(d) of approximately 100-300 nM and was almost completely enthalpy-driven. For the second binding population, precise fitting of the data was impossible due to small heats of binding, but the thermodynamics of binding were clearly distinct from the high-affinity phase. The heat capacity change (DeltaC(p)()) of binding was large for the high-affinity sites and negative for both sets of sites. Addition of sodium chloride (1 M) greatly reduced the magnitude of the apparent DeltaH, in agreement with previous evidence that electrostatic interactions play a major role in binding. A mutant scaffolding protein that forms covalent dimers (R74C/L177I) bound only to the high-affinity sites. These data comprise the first quantitative measurements of the energetics of the coat protein/scaffolding protein interaction.


Subject(s)
Bacteriophage P22/metabolism , Capsid/metabolism , Viral Structural Proteins/metabolism , Bacteriophage P22/genetics , Bacteriophage P22/physiology , Binding Sites/genetics , Calorimetry/methods , Capsid/genetics , Dimerization , Kinetics , Light , Mutation , Protein Binding/genetics , Salmonella typhimurium/genetics , Salmonella typhimurium/virology , Scattering, Radiation , Static Electricity , Thermodynamics , Viral Structural Proteins/genetics , Virus Assembly/genetics
10.
Med J Aust ; 174(10): 531-2, 2001 May 21.
Article in English | MEDLINE | ID: mdl-11419777

ABSTRACT

Patients' thoughts, feelings and desires are communicated in a variety of ways, and require sympathetic, critical interpretation. Patients need clear, evidence-based medical information so that they can make their own decisions about whether to consent to or refuse medical treatment. Treatment refusal may provide an opportunity to introduce patients to advance care planning. Unconscious motivations in doctors may obstruct good clinical decision-making. Although respect for the patient's responsibility to make healthcare decisions should be a condition of the clinical relationship, healthcare decision-making is a collaborative process.


Subject(s)
Treatment Refusal , Advance Directives , Aged , Communication , Decision Making , Humans , Male , Motivation , Physician-Patient Relations , Treatment Refusal/psychology
11.
Med J Aust ; 173(7): 380-1, 2000 Oct 02.
Article in English | MEDLINE | ID: mdl-11062796

ABSTRACT

Gamete donors are currently not tested for cystic fibrosis, even though carriers have a very high risk of producing children with the disease. We recommend that gamete donors be routinely tested for cystic fibrosis. Similar arguments exist for antenatal screening for cystic fibrosis.


Subject(s)
Cystic Fibrosis/genetics , Genetic Testing/methods , Germ Cells/transplantation , Tissue Donors , Cystic Fibrosis/prevention & control , Ethics, Medical , Female , Genetic Testing/economics , Heterozygote , Humans , Male
12.
Bioorg Med Chem Lett ; 10(21): 2427-30, 2000 Nov 06.
Article in English | MEDLINE | ID: mdl-11078193

ABSTRACT

Isothermal titration calorimetry was used to analyze the binding of an enantiomeric pair of inhibitors to the stromelysin-1 catalytic domain. Differences in binding affinity are attributable to different conformational entropy penalties suffered upon binding. Two possible explanations for these differences are proposed.


Subject(s)
Hydroxamic Acids/chemistry , Hydroxamic Acids/metabolism , Matrix Metalloproteinase Inhibitors , Oligopeptides/chemistry , Oligopeptides/metabolism , Protease Inhibitors/chemistry , Protease Inhibitors/metabolism , Calorimetry/methods , Catalytic Domain , Humans , Matrix Metalloproteinase 3/metabolism , Molecular Conformation , Molecular Structure , Protein Binding , Stereoisomerism , Thermodynamics
13.
J Mol Biol ; 299(1): 169-79, 2000 May 26.
Article in English | MEDLINE | ID: mdl-10860730

ABSTRACT

A mutant form of human interferon-gamma (IFN-gamma SC1) that binds one IFN-gamma receptor alpha chain (IFN-gamma R alpha) has been designed and characterized. IFN-gamma SC1 was derived by linking the two peptide chains of the IFN-gamma dimer by a seven-residue linker and changing His111 in the first chain to an aspartic acid residue. Isothermal titration calorimetry shows that IFN-gamma SC1 forms a 1:1 complex with its high-affinity receptor (IFN-gamma R alpha) with an affinity of 27(+/- 9) nM. The crystal structure of IFN-gamma SC1 has been determined at 2.9 A resolution from crystals grown in 1.4 M citrate solutions at pH 7.6. Comparison of the wild-type receptor-binding domain and the Asp111-containing domain of IFN-gamma SC1 show that they are structurally equivalent but have very different electrostatic surface potentials. As a result, surface charge rather than structural changes is likely responsible for the inability of the His111-->Asp domain of to bind IFN-gamma R alpha. The AB loops of IFN-gamma SC1 adopt conformations similar to the ordered loops of IFN-gamma observed in the crystal structure of the IFN-gamma/IFN-gamma R alpha complex. Thus, IFN-gamma R alpha binding does not result in a large conformational change in the AB loop as previously suggested. The structure also reveals the final six C-terminal amino acid residues of IFN-gamma SC1 (residues 253-258) that have not been observed in any other reported IFN-gamma structures. Despite binding to only one IFN-gamma R alpha, IFN-gamma SC1 is biologically active in cell proliferation, MHC class I induction, and anti-viral assays. This suggests that one domain of IFN-gamma is sufficient to recruit IFN-gamma R alpha and IFN-gamma R beta into a complex competent for eliciting biological activity. The current data are consistent with the main role of the IFN-gamma dimer being to decrease the dissociation constant of IFN-gamma for its cellular receptors.


Subject(s)
Interferon-gamma/chemistry , Interferon-gamma/metabolism , Mutation/genetics , Protein Engineering , Amino Acid Sequence , Antiviral Agents/chemistry , Antiviral Agents/metabolism , Antiviral Agents/pharmacology , Binding Sites , Calorimetry , Cell Division/drug effects , Cell Line , Crystallization , Crystallography, X-Ray , Dimerization , Histocompatibility Antigens Class I/metabolism , Humans , Interferon-gamma/genetics , Interferon-gamma/pharmacology , Models, Molecular , Molecular Sequence Data , Protein Binding , Protein Structure, Secondary , Protein Structure, Tertiary , Receptors, Interferon/chemistry , Receptors, Interferon/metabolism , Static Electricity , Thermodynamics , Up-Regulation/drug effects , Interferon gamma Receptor
14.
J Biol Chem ; 275(18): 13552-7, 2000 May 05.
Article in English | MEDLINE | ID: mdl-10788470

ABSTRACT

A monomeric form of human interleukin 10 (IL-10M1) has been engineered for detailed structure-function studies on IL-10 and its receptor complexes. Wild type IL-10 (wtIL-10) is a domain swapped dimer whose structural integrity depends on the intertwining of two peptide chains. wtIL-10 was converted to a monomeric isomer by inserting 6 amino acids into the loop connecting the swapped secondary structural elements. Characterization of IL-10M1 by mass spectroscopy, size exclusion chromatography, cross-linking, and circular dichroism shows that IL-10M1 is a stable alpha-helical monomer at physiological pH whose three-dimensional structure closely resembles one domain of wtIL-10. As previously reported, incubation of wtIL-10 with a soluble form of the IL-10Ralpha (sIL-10Ralpha) generates a complex that consists of 2 wtIL-10 molecules and 4 sIL-10Ralphas. In contrast, IL-10M1 forms a 1:1 complex with the sIL-10Ralpha. Characterization of the interaction using isothermal titration calorimetry confirmed the 1:1 stoichiometry and yielded a dissociation constant of 30 nm with an apparent binding enthalpy of -12.2 kcal/mol. Despite forming a 1:1 complex, IL-10M1 is biologically active in cellular proliferation assays. These results indicate that the 1:1 interaction between IL-10M1 and IL-10Ralpha is sufficient for recruiting the signal transducing receptor chain (IL-10Rbeta) into the signaling complex and eliciting IL-10 cellular responses.


Subject(s)
Drug Design , Genetic Engineering , Interleukin-10/analysis , Interleukin-10/genetics , Amino Acid Sequence , Circular Dichroism , Dimerization , Humans , Interleukin-10/chemistry , Molecular Sequence Data , Protein Conformation
15.
J Mol Biol ; 297(5): 1195-202, 2000 Apr 14.
Article in English | MEDLINE | ID: mdl-10764583

ABSTRACT

Scaffolding proteins are required for high fidelity assembly of most high T number dsDNA viruses such as the large bacteriophages, and the herpesvirus family. They function by transiently binding and positioning the coat protein subunits during capsid assembly. In both bacteriophage P22 and the herpesviruses the extreme scaffold C terminus is highly charged, is predicted to be an amphipathic alpha-helix, and is sufficient to bind the coat protein, suggesting a common mode of action. NMR studies show that the coat protein-binding domain of P22 scaffolding protein exhibits a helix-loop-helix motif stabilized by a hydrophobic core. One face of the motif is characterized by a high density of positive charges that could interact with the coat protein through electrostatic interactions. Results from previous studies with a truncation fragment and the observed salt sensitivity of the assembly process are explained by the NMR structure.


Subject(s)
Bacteriophage P22/chemistry , Capsid/metabolism , Peptide Fragments/chemistry , Peptide Fragments/metabolism , Viral Structural Proteins/chemistry , Viral Structural Proteins/metabolism , Amino Acid Sequence , Bacteriophage P22/physiology , Helix-Loop-Helix Motifs , Models, Molecular , Molecular Sequence Data , Nuclear Magnetic Resonance, Biomolecular , Protein Binding , Protein Structure, Secondary , Protein Structure, Tertiary , Static Electricity , Ultracentrifugation , Virus Assembly
16.
J Med Chem ; 42(21): 4275-80, 1999 Oct 21.
Article in English | MEDLINE | ID: mdl-10543871

ABSTRACT

Nine C-10 non-acetal derivatives of the natural trioxane artemisinin (1) were prepared as dimers using some novel chemistry. As designed, each dimer was stable chemically. C-10 Olefinic dimers 7 and C-10 saturated dimers 8-13 all showed good to excellent antimalarial and antiproliferative activities in vitro. Dimers 8, 10, and 12 were especially potent and selective at inhibiting growth of some human cancer cell lines in the NCI in vitro 60-cell line assay.


Subject(s)
Antimalarials/chemical synthesis , Antineoplastic Agents/chemical synthesis , Artemisinins , Lactones/chemical synthesis , Sesquiterpenes/chemical synthesis , Animals , Antimalarials/chemistry , Antimalarials/pharmacology , Antineoplastic Agents/chemistry , Antineoplastic Agents/pharmacology , Cells, Cultured , Drug Screening Assays, Antitumor , Humans , Inhibitory Concentration 50 , Lactones/chemistry , Lactones/pharmacology , Mice , Neoplasm Transplantation , Plasmodium falciparum/drug effects , Sesquiterpenes/chemistry , Sesquiterpenes/pharmacology , Structure-Activity Relationship
17.
Biochemistry ; 38(41): 13592-601, 1999 Oct 12.
Article in English | MEDLINE | ID: mdl-10521266

ABSTRACT

Matrix metalloproteinases (MMPs) are implicated in diseases such as arthritis and cancer. Among these enzymes, stromelysin-1 can also activate the proenzymes of other MMPs, making it an attractive target for pharmaceutical design. Isothermal titration calorimetry (ITC) was used to analyze the binding of three inhibitors to the stromelysin catalytic domain (SCD). One inhibitor (Galardin) uses a hydroxamic acid group (pK(a) congruent with 8.7) to bind the active site zinc; the others (PD180557 and PD166793) use a carboxylic acid group (pK(a) congruent with 4.7). Binding affinity increased dramatically as the pH was decreased over the range 5.5-7.5. Experiments carried out at pH 6.7 in several different buffers revealed that approximately one and two protons are transferred to the enzyme-inhibitor complexes for the hydroxamic and carboxylic acid inhibitors, respectively. This suggests that both classes of inhibitors bind in the protonated state, and that one amino acid residue of the enzyme also becomes protonated upon binding. Similar experiments carried out with the H224N mutant gave strong evidence that this residue is histidine 224. DeltaG, DeltaH, DeltaS, and DeltaC(p) were determined for the three inhibitors at pH 6.7, and DeltaC(p) was used to obtain estimates of the solvational, translational, and conformational components of the entropy term. The results suggest that: (1) a polar group at the P1 position can contribute a large favorable enthalpy, (2) a hydrophobic group at P2' can contribute a favorable entropy of desolvation, and (3) P1' substituents of certain sizes may trigger an entropically unfavorable conformational change in the enzyme upon binding. These findings illustrate the value of complete thermodynamic profiles generated by ITC in discovering binding interactions that might go undetected when relying on binding affinities alone.


Subject(s)
Carboxylic Acids/metabolism , Catalytic Domain , Hydroxamic Acids/metabolism , Matrix Metalloproteinase 3/metabolism , Matrix Metalloproteinase Inhibitors , Protease Inhibitors/metabolism , Binding Sites , Calorimetry/methods , Dipeptides/metabolism , Humans , Hydrogen-Ion Concentration , Macromolecular Substances , Oligopeptides/chemistry , Oligopeptides/metabolism , Protease Inhibitors/chemistry , Protons , Structure-Activity Relationship , Thermodynamics
18.
Med J Aust ; 170(9): 452-3, 1999 May 03.
Article in English | MEDLINE | ID: mdl-10341784
19.
Eur J Biochem ; 262(2): 467-74, 1999 Jun.
Article in English | MEDLINE | ID: mdl-10336631

ABSTRACT

MB-1 is a de-novo protein designed to incorporate a large number of the nutritionally important amino acids methionine, lysine, leucine and threonine into a stable four-helix bundle protein. MB-1 has been expressed and purified from Escherichia coli, indicating it was resistant to intracellular proteases [Beauregard, M., Dupont, C., Teather, R.M. & Hefford, M.A. (1995) Bio/Technology 13, 974]. Here we report an analysis of the secondary, tertiary and quaternary structures in MB-1 using circular dichroism, fluorospectroscopy and size-exclusion chromatography. Our data indicate that the MB-1 structure is close to the target structure, an alpha-helical bundle, in many respects and is highly helical in solution. The single tyrosine incorporated into the designed protein as a spectrocopic probe of tertiary structure, is buried in a compact, folded core and becomes accessible on protein denaturation, as per design. Furthermore, MB-1 was found to be native-like in many respects: (a) protein denaturation induced by urea is cooperative and fully reversible; (b) its oligomeric state at moderate concentration is well defined; and (c) MB-1 has very low affinity for 8-anilino-1-naphthalenesulfonic acid (ANSA), leading to enhancement of ANSA fluorescence that resembles that of other native proteins. On the other hand, our analysis revealed two aspects that command further attention. The folding stability of MB-1 as assessed by urea and thermal denaturation is somewhat less than that found for natural globular proteins of similar size. Size-exclusion chromatography experiments and analysis of MB-1 denaturation indicate that MB-1 is dimeric, not monomeric as designed. In light of these results, the utility and the current limitations of our design approach are discussed.


Subject(s)
Dietary Proteins , Chromatography, Gel , Circular Dichroism , Dimerization , Protein Denaturation , Protein Structure, Secondary , Protein Structure, Tertiary , Spectrometry, Fluorescence , Thermodynamics
20.
J Med Chem ; 42(2): 300-4, 1999 Jan 28.
Article in English | MEDLINE | ID: mdl-9925735

ABSTRACT

In only three chemical operations, natural trioxane lactone artemisinin (1) was converted into a series of C-10 carbon-substituted 10-deoxoartemisinin compounds 4-9. The three steps involved lactone reduction, replacement of the anomeric lactol OH by F using diethylaminosulfur trifluoride, and finally boron trifluoride-promoted substitution of F by aryl, heteroaryl, and acetylide nucleophiles. All of these C-10 nonacetal, chemically robust, enantiomerically pure compounds 4-9 have high antimalarial potencies in vitro against Plasmodium falciparum malaria parasites, and furans 5a and 5b and pyrrole 7a are antimalarially potent also in vivo even when administered to rodents orally.


Subject(s)
Antimalarials/pharmacology , Artemisinins , Heterocyclic Compounds/pharmacology , Sesquiterpenes/chemistry , Administration, Oral , Antimalarials/administration & dosage , Antimalarials/chemistry , Drug Stability , Heterocyclic Compounds/administration & dosage , Heterocyclic Compounds/chemistry , Hydrolysis , Magnetic Resonance Spectroscopy , Mass Spectrometry , Molecular Structure , Spectrophotometry, Infrared
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