Analysis of Ecuador's SCOPUS scientific production during the 2001-2020 period by means of standardized citation indicators.

An analysis of the scientific production of Ecuador is performed by means of the composite indicator computed for Ecuador-based authors as compared to their counterparts of other South American countries. The dataset employed was obtained from the Databricks platform of the ELSEVIER's International Center for Science Research, ICSR. Therefore, this analysis is limited to the metadata of the documents published in journals indexed in SCOPUS. Comparison of the results obtained for two decades: 2001-2010 and 2011-2020 showed that the number of Ecuador-based researchers has significantly increased in different areas of knowledge. Moreover, comparison between the total number of authors that worked in Ecuador at any given year of the 2011-2020 period and the number of authors that are still working in this country up to the date of the data extraction (i.e., June 2021) showed an average of ∼68% of permanency. Analysis of the percentage distribution in terms of range quarters of the composite indicator (i.e., Q4: 0-1.5, Q3: 1.5-3.0, Q2: 3.0-4.5, and Q1: 4.5-6.0) showed that nearly the totality of the Ecuador-based researchers has composite indicators that lay in the Q4 and Q3 ranges for all the scientific fields considered. The latter was observed to be an effect of the scientific impact of South American countries, with larger investments in science and technology in comparison to Ecuador (i.e., Argentina, Brazil, and Chile). Exclusion of this group of countries in the calculation of the composite indicator of Ecuador-based authors resulted in a noticeable increment of scientists with composite indicators within Q2. Finally, our results suggest, in agreement with previous studies, a correlation between the sustained growth of scientific productivity in the decade 2011-2020 with the scientific programs and policies created by the state, where the initiative of scientific culture is shown as a strategy for growth and development.

Comparative study of SARS-CoV-2 infection in different cell types: Biophysical-computational approach to the role of potential receptors.

Cellular susceptibility to SARS-CoV-2 infection in the respiratory tract has been associated with the ability of the virus to interact with potential receptors on the host membrane. We have modeled viral dynamics by simulating various cellular systems and artificial conditions, including macromolecular crowding, based on experimental and transcriptomic data to infer parameters associated with viral growth and predict cell susceptibility. We have accomplished this based on the type, number and level of expression of the angiotensin-converting enzyme 2 (ACE2), transmembrane serine 2 (TMPRSS2), basigin2 (CD147), FURIN protease, neuropilin 1 (NRP1) or other less studied candidate receptors such as heat shock protein A5 (HSPA5) and angiotensin II receptor type 2 (AGTR2). In parallel, we studied the effect of simulated artificial environments on the accessibility to said proposed receptors. In addition, viral kinetic behavior dependent on the degree of cellular susceptibility was predicted. The latter was observed to be more influenced by the type of proteins and expression level, than by the number of potential proteins associated with the SARS CoV-2 infection. We predict a greater theoretical propensity to susceptibility in cell lines such as NTERA-2, SCLC-21H, HepG2 and Vero6, and a lower theoretical propensity in lines such as CaLu3, RT4, HEK293, A549 and U-251MG. An important relationship was observed between expression levels, protein diffusivity, and thermodynamically favorable interactions between host proteins and the viral spike, suggesting potential sites of early infection other than the lungs. This research is expected to stimulate future quantitative experiments and promote systematic investigation of the effect of crowding presented here.

Structural deformability induced in proteins of potential interest associated with COVID-19 by binding of homologues present in ivermectin: Comparative study based in elastic networks models.

The COVID-19 pandemic has accelerated the study of the potential of multi-target drugs (MTDs). The mixture of homologues called ivermectin (avermectin-B1a + avermectin-B1b) has been shown to be a MTD with potential antiviral activity against SARS-CoV-2 in vitro. However, there are few reports on the effect of each homologue on the flexibility and stiffness of proteins associated with COVID-19, described as ivermectin targets. We observed that each homologue was stably bound to the proteins studied and was able to induce detectable changes with Elastic Network Models (ENM). The perturbations induced by each homologue were characteristic of each compound and, in turn, were represented by a disruption of native intramolecular networks (interactions between residues). The homologues were able to slightly modify the conformation and stability of the connection points between the Cα atoms of the residues that make up the structural network of proteins (nodes), compared to free proteins. Each homologue was able to modified differently the distribution of quasi-rigid regions of the proteins, which could theoretically alter their biological activities. These results could provide a biophysical-computational view of the potential MTD mechanism that has been reported for ivermectin.

Comparative study of the interaction of ivermectin with proteins of interest associated with SARS-CoV-2: A computational and biophysical approach.

The SARS-CoV-2 pandemic has accelerated the study of existing drugs. The mixture of homologs called ivermectin (avermectin-B1a [HB1a] + avermectin-B1b [HB1b]) has shown antiviral activity against SARS-CoV-2 in vitro. However, there are few reports on the behavior of each homolog. We investigated the interaction of each homolog with promising targets of interest associated with SARS-CoV-2 infection from a biophysical and computational-chemistry perspective using docking and molecular dynamics. We observed a differential behavior for each homolog, with an affinity of HB1b for viral structures, and of HB1a for host structures considered. The induced disturbances were differential and influenced by the hydrophobicity of each homolog and of the binding pockets. We present the first comparative analysis of the potential theoretical inhibitory effect of both avermectins on biomolecules associated with COVID-19, and suggest that ivermectin through its homologs, has a multiobjective behavior.

Fundamentals and applications of photoelectrocatalysis as an efficient process to remove pollutants from water: A review.

Water pollution is an environmental problem in constant raising because of population growing, industrial development, agricultural frontier expansion, and principally because of the lack of wastewater treatment technology to remove organic recalcitrant and toxic pollutants from industrial and domestic wastewater. Recalcitrant compounds are a serious environmental and health problem mainly due to their toxicity and potential hazardous effects on living organisms, including human beings. Conventional wastewater treatments have not been able to remove efficiently pollutants from water; however, electrochemical advanced oxidation processes (EAOPs) are able to solve this environmental concern. One of the most recent EAOPs technology is photoelectrocatalysis (PEC), it consists in applying an external bias potential to a semiconductor film placed over a conductive substrate to avoid the recombination of photogenerated electron-hole (e-/h+) pairs, increasing h+ availability and hydroxyl radicals' formation, responsible for promoting the degradation/mineralization of organic pollutants in aqueous medium. This review summarizes the recent advances in PEC as a promising technology for wastewater treatment. It addresses the fundamentals and kinetic aspects of PEC. An analysis of photoanode materials and of the configuration of photoelectrochemical reactors is also presented, including an analysis of the influence of the main operational parameters on the treatment of contaminated water. Finally, the most recent applications of PEC are reviewed, and the challenges and perspectives of PEC in wastewater treatment are discussed.

Improvement on binding of chondroitin sulfate derivatives to midkine by increasing hydrophobicity.

The interactions between chondroitin sulfate (CS) and a wide number of proteins modulate important biological processes. Here, the binding properties to midkine and pleiotrophin of sulfated, fully protected intermediates, typically obtained in the chemical synthesis of CS oligosaccharides, were tested for the first time. Using a fluorescence polarization competition experiment, we discovered that these synthetic precursors strongly bound these two closely related cytokines involved in cancer and inflammation. The relative binding affinities of these intermediates were significantly higher than those displayed by the corresponding fully deprotected oligosaccharides, indicating that the presence of hydrophobic protecting groups strongly enhanced the binding of CS-like derivatives to midkine. These compounds offer novel opportunities for the development of potent inhibitors/activators of CS-protein interactions with potential therapeutic applications.

An Arabidopsis gene regulatory network for secondary cell wall synthesis.

The plant cell wall is an important factor for determining cell shape, function and response to the environment. Secondary cell walls, such as those found in xylem, are composed of cellulose, hemicelluloses and lignin and account for the bulk of plant biomass. The coordination between transcriptional regulation of synthesis for each polymer is complex and vital to cell function. A regulatory hierarchy of developmental switches has been proposed, although the full complement of regulators remains unknown. Here we present a protein-DNA network between Arabidopsis thaliana transcription factors and secondary cell wall metabolic genes with gene expression regulated by a series of feed-forward loops. This model allowed us to develop and validate new hypotheses about secondary wall gene regulation under abiotic stress. Distinct stresses are able to perturb targeted genes to potentially promote functional adaptation. These interactions will serve as a foundation for understanding the regulation of a complex, integral plant component.

Native vs photoinduced chemiluminescence in dimethoate determination.

The determination of dimethoate using either its native chemiluminescent (CL) properties or its photoinduced chemiluminescence obtained by irradiation with a 15 W low-pressure mercury lamp was studied. Thereby, two flow injection systems (FIA) with and without irradiation were exhaustively optimized and their analytical characteristics studied. Better sensitivity and selectivity was found in absence of irradiation, due to the enhancing effect of hexadecylpyridinium chloride (HPC), which acted as a sensitizer. In the developed FIA-CL system, the alkaline hydrolysis of dimethoate with NaOH was performed on-line in presence of HPC. The oxidation of the product of hydrolysis with Ce(IV) in hydrochloric medium induced chemiluminescence. The method provided a limit of detection of only 0.05 ng mL(-1) without any pre-treatment. However, the combination with solid phase extraction allowed the removal of some potential interferents as well as the preconcentration of the pesticide. Finally, the developed method was successfully applied to natural waters with recoveries between 95 and 108%.

Characterization of annexin A1 glycan binding reveals binding to highly sulfated glycans with preference for highly sulfated heparan sulfate and heparin.

Annexin A1 is a multifunctional, calcium-dependent phospholipid binding protein involved in a host of processes including inflammation, regulation of neuroendocrine signaling, apoptosis, and membrane trafficking. Binding of annexin A1 to glycans has been implicated in cell attachment and modulation of annexin A1 function. A detailed characterization of the glycan binding preferences of annexin A1 using carbohydrate microarrays and surface plasmon resonance served as a starting point to understand the role of glycan binding in annexin A1 function. Glycan array analysis identified annexin A1 binding to a series of sulfated oligosaccharides and revealed for the first time that annexin A1 binds to sulfated non-glycosaminoglycan carbohydrates. Using heparin/heparan sulfate microarrays, highly sulfated heparan sulfate/heparin were identified as preferred ligands of annexin A1. Binding of annexin A1 to heparin/heparan sulfate is calcium- but not magnesium-dependent. An in-depth structure-activity relationship of annexin A1-heparan sulfate interactions was established using chemically defined sugars. For the first time, a calcium-dependent heparin binding protein was characterized with such an approach. N-Sulfation and 2-O-sulfation were identified as particularly important for binding.

Determination of diquat by flow injection-chemiluminescence.

A simple, economic, sensitive and rapid method for the determination of the pesticide diquat was described. This new method was based on the coupling of flow injection analysis methodology and direct chemiluminescent detection; to the authors' knowledge, this approach had not been used up to now with this pesticide. It was based on its oxidation with ferricyanide in alkaline medium; significant improvements in the analytical signal were achieved by using high temperatures and quinine as sensitiser. Its high throughput (144 h(-1)), together with its low limit of detection (2 ng mL(-1)), achieved without need of preconcentration steps, permitted the reliable quantification of diquat over the linear range of (0.01-0.6) microg mL(-1) in samples from different origins (river, tap, mineral and ground waters), even in the presence of a 40-fold concentration of paraquat, a pesticide commonly present in the commercial formulations of diquat.

Flow injection-photoinduced-chemiluminescence determination of ziram and zineb.

A simple, sensitive and rapid method for the determination of the pesticides ziram and zineb was described. This new method was based on the coupling of FIA methodology and direct chemiluminescent detection; this approach had not been used up to now with these pesticides. The additional use of an 'on line' photochemical reaction, which was performed by using a photoreactor consisting of a long piece of PTFE helically coiled around a 15W low-pressure lamp, increased by a factor >20 the chemiluminometric response of the pesticides. An additional 3-fold improvement in the analytical signal was also achieved by using quinine as sensitizer. The obtained throughputs were very high (121 and 101 h(-1) for ziram and zineb, respectively); this feature together with its low limit of detection (1 ng mL(-1)) makes this method particularly well suited to routine analyses of environmental samples. On the other hand, its applicability to two members of the dithiocarbamate family of pesticides, makes it promising for the determination of the rest of the members of this family. The method was demonstrated by application to spiked water samples from different origins (ground, river and irrigation).

On the inoperativeness of the ESIPT process in the emission of 1-hydroxy-2-acetonaphthone: a reappraisal.

For a molecule which contains an intramolecular hydrogen bond (IMHB) in its chemical structure to undergo an excited singlet intramolecular proton transfer (ESIPT) process, on photoexcitation, there must occur a simultaneous increase, in a substantial manner, in the acidity of the proton donor and the basicity of the proton acceptor forming the IMHB [J. Am. Chem. Soc. 2001, 123, 11940]. For the reason that those changes occur on photoexcitation of the 2-hydroxyacetophenone but not for 1-hydroxy-acetonaphthone, one draws the conclusion that, while ESIPT is operative in the 1(pi,pi*)(1) electronic state of the monocyclic compound 2-hydroxyacetophenone, it is not operative in its bicyclic homolog 1-hydroxy-2-acetonaphthone. We have shown the photophysics of 1-hydroxy-2-acetonaphthone in its first excited electronic state to be governed by two stable, easily reconverted enol structures, the presence of which causes the peaks in the free-jet fluorescence excitation spectrum for the compound to split into two of similar strength. In this paper, we rationalize photophysical evidence for 1-hydroxy-2-acetonaphthone obtained by femtosecond spectroscopy over the past 13 years in the light of existing photophysical patterns based on steady-state spectra for the compound [J. Am. Chem. Soc. 1993, 115, 4321].

On the photophysics of all-trans polyenes: hexatriene versus octatetraene.

The disparate photophysical behavior of trans-1,3,5-hexatriene (nonfluorescent) and trans-1,3,5,7-octatetraene (with two fluorescence emissions) in the gas phase is explained in terms of the tendency of their 1B(u) excited states to rotate about their terminal carbon-carbon single bonds in order to adopt a quasiplanar molecular form of lower energy than the 1B(u) state in the parent all-trans structure. The origin of their disparate photophysical behavior is that such a transformation is subject to a small energy barrier in octatetraene; the barrier produces two minima (two fluorescence emissions) in the corresponding potential-energy curve. Instead of an energy barrier, hexatriene gives a 1,3-diene species which falls to the ground state so rapidly that no emission is produced.

Study of 7-azaindole in its first four singlet states.

The molecular structure and properties of 7-azaindole in its first four singlet states were studied with a view to improving current understanding of the photophysical behavior of its C(2h) dimer. This dimer, which exhibits a double proton transfer via its two hydrogen bonds upon electronic excitation, has for 35 years been used as a model for the photophysical behavior of DNA base pairs. Electronic excitation of 7-azaindole simultaneously increases its acidity and basicity; these changes facilitate a concerted mechanism for the double proton transfer in the dimer. In this work, we found the acidity and basicity changes to occur only in its first pi,pi(*) excited singlet state.

La entomología forense y el neotrópico / The forensic entomology and the neotropic

La Entomología Forense ha alcanzado un estatus importante dentro de las ciencias forenses. Los países del Neotrópico tienen una composición faunística y ambiental, diversa y extensa. Sin embargo, son escasos los trabajos referentes a la sucesión de insectos en cadáveres en esta región. Los objetivos de este trabajo fueron recopilar información bibliográfica acerca de las investigaciones realizadas en el Neotrópico y en otras latitudes, y compararlos con los obtenidos en observaciones realizadas en pequeños cadáveres de mamíferos en la Parroquia Juana de Ávila, Municipio Maracaibo, Estado Zulia, Venezuela. Hay autores que han reportado que la estacionalidad es un factor decisivo en países como Canadá, Estados Unidos y España en contraste con países del Neotrópico, como Perú y Colombia. Esto determinó una variabilidad importante tanto en las oleadas de artrópodos, como en la duración de cada una de las etapas de descomposición de los restos. En nuestras observaciones de campo, Chrysomya sp. apareció desde el primer día y sus larvas se mantuvieron en ese estado hasta el séptimo y octavo día donde empezaron a formar pupas, las cuales emergieron entre el noveno y décimo día. Se observó la presencia muy dispersa y pobre del adulto, después del décimo día. Se concluyó que Chrysomya sp. fue la especie dominante sobre los otros dípteros carroñeros y el indicador principal del intervalo postmortem (I.P.M.), durante los primeros diez días en los cadáveres estudiados

Forensic Entomology has reached an important status within the forensic sciences. The Neo-tropical countries have a vast and diverse environmental and faunal composition. Nevertheless, the studies regarding the insect succession in cadavers in this region, are scarce. The objective of this paper is to gather information regarding the research performed in the Neo-tropics and in other latitudes, and to carry out observations in the cadavers of small mammals in the Parish of Juana de Avila, Municipality Maracaibo, State Zulia, Venezuela. A bibliographic revision was made as well as the daily captures and observations of insects in the carcasses of three domestic cats and four laboratory rats during a period of ten days. Other authors have reported that the seasonal variations is a decisive factor in countries such as Canada, the United States and Spain, in contrast to what happens in Neotropical countries such as Peru and Colombia. This has determined an important variability in the arthropod waves, as well as in the duration of each of the decomposition stages of the remains. According to our field observations, Chrysomya sp, appeared on the first day and a larva stage was maintained until the seventh and eighth day when they started to create pupas, which emerged between the ninth and tenth day. After the tenth day, a poor and disperse presence of the adult could be observed. The conclusion was that Chrysomya sp was the dominant specie among the other carrions dipterous and the principal indicator of post-mortem interval (P.M.I.) during the first ten days in the cadavers under study

The molecular symmetry and electronic spectroscopy of 7-azaindole dimer: its proton-transfer channels.

The potential-energy surfaces for the proton transfer in the doubly hydrogen-bonded dimer of 7-azaindole in its lowest excited electronic states were examined. The dimer with C2h symmetry in its lowest excited electronic states, 2Ag and 1Bu, undergoes concerted double-proton transfer via transition states of the same symmetry placed at energies 4.55 and 4.70 kcal/mol higher, respectively. This suggests that the activation barriers for the double-proton transfer, if any, are lower than 1 kcal/mol. Emission from the dimers resulting from the double-proton transfer involves a Stokes shift of 5605 cm(-1), as theoretically estimated from the 0-0 components of the absortion and emission transitions of the dimer. Surprisingly, however, the calculations suggest that the green emission cannot arise from the 2Ag state generated by a double-proton transfer, because this structure possesses an imaginary frequency. In the 7-azaindole dimer of Cs symmetry, the first excited electronic state, a', lies 4.9 kcal/mol below 1Bu. This excited state a' can be the starting point for single-proton transfers giving a zwitterionic form that can dissociate into the protonated and deprotonated forms of 7-azaindole, the former being electronically excited. This situation of lower symmetry is consistent with the mutational scheme proposed by Goodman [Nature (London) 378, 237 (1995)].

On the ordering of the first two excited electronic states in all-trans linear polyenes.

Reported experimental evidence of the relative position of the first two excited electronic states in linear polyenes was carefully examined and compared with that derived from time dependent density functional theory (TDDFT) theoretical calculations performed at the B3LYP level on optimized geometries. The energy values for the first two triplet states 3Bu and 3Ag, obtained from TDDFT calculations, were found to be highly strongly correlated with the experimental values. Also, the theoretical calculations for the electronic transition 1 1Ag --> 1 1Bu were also extremely well correlated with their experimental counterparts; even more important, the three reported experimental data for 1 1Ag --> 2 1Ag transitions in these systems conformed to the correlation for the TDDFT 1 1Ag --> 1 1Bu transition. The first excited electronic state in the linear polyenes studied (from ethene to the compound consisting of 40 ethene units, P40) was found to be 1Bu. The energy gap between the excited states 2 1Ag and 1 1Bu decreased with increasing length of the polyene chain, but not to the extent required to cause inversion, at least up to P40. In the all-trans linear polyenes studied, the widely analyzed energy gap from the ground electronic state to the first excited singlet state for infinitely long chains may be meaningless as, even in P40, it is uncertain whether the ground electronic state continues to be a singlet.

H-bonded N-heterocyclic base-pair phototautomerizational potential barrier and mechanism: The 7-azaindole dimer.

A theoretical analysis of the double proton transfer (PT) in a hydrogen-bonded N-heterocyclic base pair is presented. The calculated (time-dependent density functional theory) double PT barrier calculated for the concerted process of the 7-azaindole C(2h) dimer in the first excited singlet electronic state S(1) conforms well to the kinetic data and the photophysical evidence reported in this article. The calculated PT energy barrier of 4.8 kcal/mol height, and the corresponding zero point energy value, yield for the S(1) state an activation energy barrier of 0.3 kcal/mol. This finding implies that the double PT concerted process is almost barrierless, confirming previous experiments. Upon N-H deuteration of the 7-azaindole dimer, the theoretical excited-state activation energy for the double deuterium transfer is determined to be 1.4 kcal/mol, in agreement with experiment, which in low-temperature spectroscopy is shown to negate excited-state double-deuteron transfer.

Autopsia bucal post-exhumación en víctimas de un desastre masivo: masacre de la cárcel de Sabaneta, Maracaibo, Venezuela / Post-exhumation buccal autopsy in victims of a massive disaster: the Sabaneta Jail Massacre, Maracaibo, Venezuela

Ante la solicitud presentada por los parientes de víctimas no identificadas de la Masacre de la Cárcel de Sabaneta, Maracaibo, Venezuela, un tribunal ordenó la exhumación de cuatro cadáveres, quince días después de haber sido sepultados. Se observó una buena conservación de los restos con apreciable mantenimiento de las estructuras y contornos faciales. Se evidenció que el método de acceso a la cavidad oral empleado en la autopsia bucal pre-inhumación facilitó el abordaje para la autopsia post-exhumación, sin provocar mayor destrucción de los tejidos blandos y permitiendo la correcta manipulación tanto de las estructuras orales como de los dispositivos protésicos aportados como evidencias. En todos los casos se verificó la coincidencia de los datos obtenidos durante la autopsia pre-sepultura. Se concluye que cuando el proceso de inhumación se lleva a cabo siguiendo una adecuada planificación, se facilita una futura recuperación del cadáver cuando esta es requerida para completar el procedimiento de identificación (AU)

The concerted mechanism of photo-induced biprotonic transfer in 7-azaindole dimers: a model for the secondary evolution of the classic C2h dimer and comparison of four mechanisms.

A mechanism is proposed for the formation in gas phase, during a short time, of the delicately symmetrical coplanar C(2h) classic 7-azaindole (7AI) doubly hydrogen-bonded dimer. Of the five card-pack or otherwise random geometry structures most likely to be formed in the supersonic jet expansion molecular beam, none would be an obvious precursor to the C(2h) dimer. One unstable dimer with dipole-dipole, van der Waals, and plane-to-plane hydrogen bonding is shown to be capable of unhinging about the hydrogen-bond pair as an axis, from 0 degrees to 90 degrees to 180 degrees, yielding a deep minimum for the C(2h) structure with its delicate geometry and symmetry. This relaxation mechanism is feasible in the 3-micros interval between the nozzle escape and the first laser pulse interception of the molecular beam. In the second part of the paper four published mechanisms are compared for concerted vs. two-step biprotonic phototransfer for the 7AI dimers. The dependence of the latter two models on H-atom instead of proton-transfer as an intermediate step negates the mechanism in a singlet (pi,pi*) electronic state by the valency repulsion, in the 3-electron orbital that would be generated. The concerted mechanism for biprotonic phototransfer is reaffirmed by the analysis of the quantum mechanical conditions set on the biprotonic transfer in the photo-excited molecular 7AI pair.