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1.
Mikrobiologiia ; 78(1): 98-105, 2009.
Article in Russian | MEDLINE | ID: mdl-19334602

ABSTRACT

A novel halotolerant psychrotrophic gram-negative bacterium, strain 2pS, was isolated from lenses of water brine in Arctic permafrost (cryopeg). The optimal growth of the new strain was observed at 16-18 degrees C; the maximal and minimal growth temperatures were 37 degrees C and -2 degrees C, respectively. The pH growth range was 5.8 to 8.5 (optimum 6.5-7.5) and the range of medium salinity was 0 to 100 g/l (optimum 3-8 g/l NaCl). The strain 2pS did not produce acid from carbohydrates and utilized acetate, yeast extract, pyruvate, glutarate, fumarate, caproate, heptanoate, butyrate, malate, DL-lactate, citrate, L-proline, L-tyrosine, butanol, and dulcitol as the sole carbon and energy sources. The major fatty acids of the cell wall at optimal growth temperature were C18:1(omega 7) and C18:1(omega 9). The G + C DNA content was 46.0 mol.%. Phylogenetic analysis of the 16S rRNA gene sequences showed that the studied strain was the closest (97% similarity) to Psychrobacter nivimaris DSM 16093T, a halotolerant psychrotrophic bacterium isolated from the Arctic sea's ice. Genotypic and phenotypic differences of the new bacterium from closely related species lead to the conclusion that strain 2pS belongs to a novel species of the genus Psychrobacter: Psychrobacter muriicola sp. nov.


Subject(s)
Moraxellaceae/classification , Salinity , Seawater/microbiology , Water Microbiology , Arctic Regions , Carbohydrate Metabolism , Cell Wall/metabolism , Culture Media , Fatty Acids/analysis , Fatty Acids/metabolism , Molecular Sequence Data , Moraxellaceae/cytology , Moraxellaceae/genetics , Moraxellaceae/metabolism , Phenotype , Phylogeny , Sequence Homology, Nucleic Acid , Substrate Specificity , Temperature
2.
Mikrobiologiia ; 76(5): 694-701, 2007.
Article in Russian | MEDLINE | ID: mdl-18069331

ABSTRACT

The paper deals with the microbiological characterization of water-saturated horizons in permafrost soils (cryopegs) found on the Varandei Peninsula (Barents Sea coast), 4-20 m deep. The total quantity of bacteria in the water of cryopegs was 3.5 x 10(8) cells/ml. The population of cultivated aerobic heterotrophic bacteria was 3-4 x 10(7) cells/ml and the number of anaerobic heterotrophic bacteria varied from 10(2) to 10(5) cells/ml depending on cultivation temperature and salinity. Sulfate-reducing bacteria and methanogenic archaea were found as hundreds and tens of cells per ml of water, respectively. A pure culture of a sulfate-reducing strain B15 was isolated from borehole 21 and characterized. Phylogenetic analysis has shown that the new bacterium is a member of the genus Desulfovibrio with Desulfovibrio mexicanus as its closest relative (96.5% similarity). However, the significant phenotypic differences suggest that strain B15 is a new species of sulfate-reducing bacteria.


Subject(s)
Bacteria/isolation & purification , Marine Biology , Seawater/microbiology , Water Microbiology , Archaea/isolation & purification , Archaea/metabolism , Arctic Regions , Bacteria/classification , Cold Temperature , Desulfovibrio/classification , Desulfovibrio/isolation & purification , Ice , Methane/metabolism , Russia , Salinity , Sulfur-Reducing Bacteria/classification , Sulfur-Reducing Bacteria/isolation & purification
3.
Extremophiles ; 9(3): 239-46, 2005 Jun.
Article in English | MEDLINE | ID: mdl-15844014

ABSTRACT

A gram-positive, motile, strict anaerobic spore-forming bacterium was isolated from the over-cooled brine in the permafrost. The optimal temperature for isolate growth was 5-6 degrees C at pH 6.8-7.2. The bacterium was growing on the medium rich in saccharides and disaccharides. Out of polysaccharides tested, only xylan sustained the growth. Fermentation of the hexoses led to the formation of acetate, butyrate, lactate, H2,CO2 and some formate and ethanol. Cell wall peptidoglycan contained meso-diaminopimelic acid. The major fatty acids of the cell wall were C(14:0) and C(16:1c9). The content of G-C pairs in DNA was 31.4 mol%. As phylogenetic analysis has shown, it is closely linked to the members of cluster 1 of Clostridium. It differs from the other species of the genus by the substrates necessary for the growth, products forming as a result of the fermentation and content of the fatty acids in the cell wall. Thus, it was suggested to describe this strain as a new species named Clostridium algoriphilum. Type strain 14D1 was deposited into the Russian Collection of the Microorganisms VKM B-2271T and German Collection of the Microorganisms DSM 16153T .


Subject(s)
Bacteria, Anaerobic/isolation & purification , Water Microbiology , Bacteria, Anaerobic/classification , Bacteria, Anaerobic/cytology , Bacteria, Anaerobic/growth & development , Cell Wall/chemistry , Fatty Acids/analysis , Freezing , Hot Temperature , Lipids/analysis , Polysaccharides, Bacterial/isolation & purification , Spores, Bacterial
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