Formation and properties of spindle-shaped aragonite mesocrystals from Mg-bearing solutions.

The formation of aragonite under ambient conditions is typically linked to Mg-rich aqueous environments. The grains that form in such environments show peculiar properties such as aggregate-like appearance and mesocrystalline character. We tested the effect of dissolved Mg2+ ions on the formation of aragonite mesocrystals by synthesizing aragonite with an automatic titrator at constant pH and at different dissolved Mg : Ca ratios, and by studying the properties of the precipitated material with various scanning transmission electron microscopy (STEM) techniques. At all studied Mg : Ca ratios the firstly condensed carbonate phase was Mg-bearing amorphous calcium carbonate (Mg-ACC) that transformed into aragonite during the synthesis experiments. The aragonite grains had typically aggregate-like appearance and spindle shapes, with the external morphologies of the spindles unaffected by variation in solution chemistry. The alignment of the nanocrystals within the aggregates was crystallographically highly coherent, the [001] directions of nanocrystals showing only a small misorientation with respect to one another; however, both parallel and twin assembly of neighbouring crystals occurred. An increase in the dissolved Mg concentration decreased the crystallographic coherence between the aragonite nanocrystals, suggesting an important role of Mg2+ ions in the assembly of aragonite spindles. Whereas the mesoscale-ordered arrangement of nanocrystals implies a particle-mediated assembly, the observed differences in particle size and composition between the amorphous precursor and the crystalline end-product suggest that the crystallization includes at least partial dissolution and re-precipitation. These findings provide insight into the formation of aragonite and could contribute to the understanding of important aspects of the formation of mesocrystals and hierarchically structured biogenic minerals.

Dual-Role Peptide with Capping and Cleavage Site Motifs in Nanoparticle-Based One-Pot Colorimetric and Electrochemical Protease Assay.

A new method for enzyme substrate assembly and its use in proteolytic enzyme assays with colorimetric and electrochemical detection is presented. The novelty of the method is the use of dual-function synthetic peptide containing both gold clustering and protease-sensitive moieties, which not only induces the simple formation of the peptide-decorated gold nanoparticle test substrates but also allows for the detection of proteolysis in the same batch. Protease-treated nanoparticles with a destabilized peptide shell became more prone to electroactivity, and thus, the model enzyme plasmin activity could be quantified with stripping square wave voltammetry analysis as well, giving an alternative method to conduct aggregation-based assays. Spectrophotometric and electrochemical calibration data proved to be linear within the 40-100 nM active enzyme concentration range, with possible extensions of the dynamic range by varying substrate concentration. The simple initial components and the ease of synthesis make the assay substrate preparation economic and easy to implement. The possibility of cross-check analytical results with two independent measurement techniques in the same batch greatly increases the applicability of the proposed system.

Photocatalytic H2 Production by Visible Light on Cd0.5Zn0.5S Photocatalysts Modified with Ni(OH)2 by Impregnation Method.

Nowadays, the study of environmentally friendly ways of producing hydrogen as a green energy source is an increasingly important challenge. One of these potential processes is the heterogeneous photocatalytic splitting of water or other hydrogen sources such as H2S or its alkaline solution. The most common catalysts used for H2 production from Na2S solution are the CdS-ZnS type catalysts, whose efficiency can be further enhanced by Ni-modification. In this work, the surface of Cd0.5Zn0.5S composite was modified with Ni(II) compound for photocatalytic H2 generation. Besides two conventional methods, impregnation was also applied, which is a simple but unconventional modification technique for the CdS-type catalysts. Among the catalysts modified with 1% Ni(II), the impregnation method resulted in the highest activity, for which a quantum efficiency of 15.8% was achieved by using a 415 nm LED and Na2S-Na2SO3 sacrificial solution. This corresponded to an outstanding rate of 170 mmol H2/h/g under the given experimental conditions. The catalysts were characterized by DRS, XRD, TEM, STEM-EDS, and XPS analyses, which confirmed that Ni(II) is mainly present as Ni(OH)2 on the surface of the CdS-ZnS composite. The observations from the illumination experiments indicated that Ni(OH)2 was oxidized during the reaction, and that it therefore played a hole-trapping role.

Nanoscale Pathway of Modern Dolomite Formation in a Shallow, Alkaline Lake.

Dolomite [CaMg(CO3)2] formation under Earth surface conditions is considered largely inhibited, yet protodolomite (with a composition similar to dolomite but lacking cation ordering), and in some cases also dolomite, was documented in modern shallow marine and lacustrine, evaporative environments. Authigenic carbonate mud from Lake Neusiedl, a shallow, episodically evaporative lake in Austria consists mainly of Mg-calcite with zoning of Mg-rich and Mg-poor regions in µm-sized crystals. Within the Mg-rich regions, high-resolution transmission electron microscopy revealed < 5-nm-sized domains with dolomitic ordering, i.e., alternating lattice planes of Ca and Mg, in coherent orientation with the surrounding protodolomite. The calcite with less abundant Mg does not show such domains but is characterized by pitted surfaces and voids as a sign of dissolution. These observations suggest that protodolomite may overgrow Mg-calcite as a result of the changing chemistry of the lake water. During this process, oscillating concentrations (in particular of Mg and Ca) at the recrystallization front may have induced dissolution of Mg-calcite and growth of nanoscale domains of dolomite, which subsequently became incorporated as ordered domains in coherent orientation within less ordered regions. It is suggested that this crystallization pathway is capable of overcoming, at least at the nanoscale, the kinetic barrier to dolomite formation.

Characterization of Various Titanium-Dioxide-Based Catalysts Regarding Photocatalytic Mineralization of Carbamazepine also Combined with Ozonation.

Titanium-dioxide-based semiconductors proved to be appropriate for photocatalytic application to efficiently degrade emerging organic pollutants such as various herbicides, pesticides, and pharmaceuticals in waters of environmental importance. The characterization of various TiO2 catalysts, both bare and modified (Ag- and/or N-doped), by mechanochemical treatment was carried out in this work, regarding their structure, morphology, and photocatalytic activity. For the latter investigations, carbamazepine, an antidepressant, proved to be applicable and versatile. The photocatalytic behavior of the catalysts was studied under both UV and visible light. Besides the decomposition efficiency, monitoring the intermediates provided information on the degradation mechanisms. Mechanochemical treatment significantly increased the particle size (from 30 nm to 10 µm), causing a considerable (0.14 eV) decrease in the band gap. Depending on the irradiation wavelength and the catalyst, the activity orders differed, indicating that, in the mineralization processes of carbamazepine, the importance of the different oxidizing radicals considerably deviated, e.g., Ag-TiO2 < DP25-TiO2 < ground-DP25-TiO2 < N-TiO2 ≈ N-Ag-TiO2 for O2•− and N-TiO2 ≈ Ag-TiO2 < N-Ag-TiO2 < ground-DP25-TiO2 ≈ DP25-TiO2 for HO• generation under UV irradiation. Toxicity studies have shown that the resulting intermediates are more toxic than the starting drug molecule, so full mineralization is required. This could be realized by a synergistic combination of heterogeneous photocatalysis and ozonation.

Periplasmic Bacterial Biomineralization of Copper Sulfide Nanoparticles.

Metal sulfides are a common group of extracellular bacterial biominerals. However, only a few cases of intracellular biomineralization are reported in this group, mostly limited to greigite (Fe3 S4 ) in magnetotactic bacteria. Here, a previously unknown periplasmic biomineralization of copper sulfide produced by the magnetotactic bacterium Desulfamplus magnetovallimortis strain BW-1, a species known to mineralize greigite (Fe3 S4 ) and magnetite (Fe3 O4 ) in the cytoplasm is reported. BW-1 produces hundreds of spherical nanoparticles, composed of 1-2 nm substructures of a poorly crystalline hexagonal copper sulfide structure that remains in a thermodynamically unstable state. The particles appear to be surrounded by an organic matrix as found from staining and electron microscopy inspection. Differential proteomics suggests that periplasmic proteins, such as a DegP-like protein and a heavy metal-binding protein, could be involved in this biomineralization process. The unexpected periplasmic formation of copper sulfide nanoparticles in BW-1 reveals previously unknown possibilities for intracellular biomineralization that involves intriguing biological control and holds promise for biological metal recovery in times of copper shortage.

Effects of Preparation Conditions on the Efficiency of Visible-Light-Driven Hydrogen Generation Based on Ni(II)-Modified Cd0.25Zn0.75S Photocatalysts.

Hydrogen as an environmentally friendly fuel can be produced by photocatalytic procedures from aqueous systems, utilizing H2S, an industrial side-product, by conversion and storage of renewable solar energy. Although composites of CdS and ZnS prepared by co-precipitation are very efficient in heterogeneous photocatalytic H2 generation, the optimal conditions for their synthesis and the effects of the various influencing factors are still not fully clarified. In this work, we investigated how the efficiency of Cd0.25Zn0.75S composites modified with Ni(II) was affected by the doping method, Ni-content, hydrothermal treatment, and presence of a complexing agent (ammonia) used in the preparation. The composition, optical, and structural properties of the photocatalysts prepared were determined by ICP, DRS, XRD, TEM, and STEM-EDS. Although hydrothermal treatment proved preferable for Ni-free composites, Ni-modification was more efficient for untreated composites precipitated from ammonia-containing media. The best efficiency (14.9% quantum yield at 380 nm irradiation, 109.8 mmol/g/h hydrogen evolution rate) achieved by surface modification with 0.1-0.3% Ni(II) was 15% and 20% better than those for hydrothermally treated catalyst and similarly prepared Pt-modified one, respectively. Structural characterization of the composites clearly confirmed that the Ni2+ ions were not embedded into the CdS-ZnS crystal lattice but were enriched on the surface of particles of the original catalyst in the form of NiO or Ni(OH)2. This co-catalyst increased the efficiency by electron-trapping, but its too high amount caused an opposite effect by diminishing the excitable surface of the CdS-ZnS particles.

Wettability of Magnetite Nanoparticles Guides Growth from Stabilized Amorphous Ferrihydrite.

Crystal formation via amorphous precursors is a long-sought-after gateway to engineer nanoparticles with well-controlled size and morphology. Biomineralizing organisms, like magnetotactic bacteria, follow such a nonclassical crystallization pathway to produce magnetite nanoparticles with sophistication unmatched by synthetic efforts at ambient conditions. Here, using in situ small-angle X-ray scattering, we demonstrate how the addition of poly(arginine) in the synthetic formation of magnetite nanoparticles induces a biomineralization-reminiscent pathway. The addition of poly(arginine) stabilizes an amorphous ferrihydrite precursor, shifting the magnetite formation pathway from thermodynamic to kinetic control. Altering the energetic landscape of magnetite formation by catalyzing the pH-dependent precursor attachment, we tune magnetite nanoparticle size continuously, exceeding sizes observed in magnetotactic bacteria. This mechanistic shift we uncover here further allows for crystal morphology control by adjusting the pH-dependent interfacial interaction between liquidlike ferrihydrite and nascent magnetite nanoparticles, establishing a new strategy to control nanoparticle morphology. Synthesizing compact single crystals at wetting conditions and unique semicontinuous single-crystalline nanoparticles at dewetting conditions in combination with an improved control over magnetite crystallite size, we demonstrate the versatility of bio-inspired, kinetically controlled nanoparticle formation pathways.

Rapid Determination of Full and Empty Adeno-Associated Virus Capsid Ratio by Capillary Isoelectric Focusing.

Adeno-associated virus (AAV) is one of the most promising gene transfer vector types featuring long-term gene expression and low toxicity. The lack of pathogenicity and the availability of many serotypes augmented the applicability of AAV virions in gene therapy applications. The recombinant AAV capsid includes the therapeutic protein-coding transgene as well as a promoter to initiate translation and a poly A sequence portion for stabilization. Current AAV manufacturing technologies, however, cannot guarantee the generation of only full capsids, i.e., including the entire required genome. Partially filled and empty capsids are also part of the product, decreasing in this way the efficacy and safety upon clinical translation. Therefore, rapid, accurate and QC friendly analysis of the full and empty capsid ratio is of high importance during AAV vector manufacturing and release testing. In this paper, an automated capillary isoelectric focusing technique is introduced, readily applicable in the biopharmaceutical industry for fast and efficient determination of the full and empty capsid ratio. The method also reveals information about the proportion of partially filled capsids. For higher resolution (<0.1 pI unit), mixtures of wide and narrow range ampholytes were utilized. The isoelectric point and peak area percentage reproducibility (RSD) of the mixed ampholyte assay were as low as 1.67% and 2.45 %, respectively, requiring only 65 nL of sample volume per injection.

PbS biomineralization using cysteine: Bacillus cereus and the sulfur rush.

Bacillus sp. Abq, belonging to Bacillus cereus sensu lato, was isolated from an aquifer in New Mexico, USA and phylogenetically classified. The isolate possesses the unusual property of precipitating Pb(II) by using cysteine, which is degraded intracellularly to hydrogen sulfide (H2S). H2S is then exported to the extracellular environment to react with Pb(II), yielding PbS (galena). Biochemical and growth tests showed that other sulfur sources tested (sulfate, thiosulfate, and methionine) were not reduced to hydrogen sulfide. Using equimolar concentration of cysteine, 1 mM of soluble Pb(II) was removed from Lysogeny Broth (LB) medium within 120 h of aerobic incubation forming black, solid PbS, with a removal rate of 2.03 µg L-1 h-1 (∼8.7 µM L-1 h-1). The mineralogy of biogenic PbS was characterized and confirmed by XRD, HRTEM and EDX. Electron microscopy and electron diffraction identified crystalline PbS nanoparticles with a diameter <10 nm,  localized in the extracellular matrix and on the surface of the cells. This is the first study demonstrating the use of cysteine in Pb(II) precipitation as insoluble PbS and it may pave the way to PbS recovery from secondary resources, such as Pb-laden industrial effluents.

Palladium nanoparticles on a pyridinium supported ionic liquid phase: a recyclable and low-leaching palladium catalyst for aminocarbonylation reactions.

A new SILP (Supported Ionic Liquid Phase) palladium catalyst was prepared and characterized by 13C and 29Si CP MAS NMR, DTG, FTIR and TEM. The presence of the grafted pyridinium cations on the surface of the support was found to result in the formation of highly dispersed Pd nanoparticles with their diameter in the range of 1-2 nm. The catalyst was proved to be active not only in the aminocarbonylation of some model compounds but also in the synthesis of active pharmaceutical ingredients. Catalyst recycling and palladium leaching studies were carried out for the first time in aminocarbonylations leading to CX-546(1-(1,4-benzodioxan-6-ylcarbonyl)piperidine), Moclobemide, Nikethamide and a precursor of Finasteride. The latter reaction proves that not only aryl iodides but also an iodoalkene can be converted into the products with the help of the heterogeneous catalyst. The results show that the conditions should be always fine-tuned in the reactions of different substrates to achieve optimal results. Palladium loss was also observed to depend considerably on the nature of the reaction partners.

Development and Application of Carbon-Layer-Stabilized, Nitrogen-Doped, Bamboo-Like Carbon Nanotube Catalysts in CO2 Hydrogenation.

Nitrogen-doped, bamboo-like carbon nanotubes (BCNTs) were synthesized from butylamine by catalytic chemical vapor deposition (CCVD method). The nanotubes were oxidized by H2SO4/HNO3 treatment and used to prepare calcium alginate gelled BCNT spheres. These beads were first carbonized and then Pd, Rh and Ni nanoparticles were anchored on the surface of the spheres. These systems were then applied as catalysts in CO2 hydrogenation. The BCNT support was examined by Raman spectroscopy, dynamic light scattering (DLS) and X-ray photoelectron spectroscopy (XPS). The prepared catalysts were characterized by HRTEM and SEM. The oxidation pretreatment of BCNTs was successful, with the electrokinetic potential of the water-based dispersion of BCNTs measuring -59.9 mV, meaning the nanotube dispersion is stable. Pyridinic and graphitic types of incorporated nitrogen centers were identified in the structure of the nanotubes, according to the XPS measurements. The Pd-containing BCNT sphere catalyst was the most efficient in the catalytic studies. The highest conversion was reached on the Pd catalyst at 723 K, as well as at 873 K. The difference in the formation rate of CO was much less at 873 K between the Pd and Rh compared to the 723 K values. Accordingly, the application of Pd-containing BCNT/carbon-supported catalyst favored the generation of CO. However, the Ni-BCNT/carbon catalyst leads to the formation of CH4 as the major product.

Draft genome sequence of Methylibium sp. strain T29, a novel fuel oxygenate-degrading bacterial isolate from Hungary.

Methylibium sp. strain T29 was isolated from a gasoline-contaminated aquifer and proved to have excellent capabilities in degrading some common fuel oxygenates like methyl tert-butyl ether, tert-amyl methyl ether and tert-butyl alcohol along with other organic compounds. Here, we report the draft genome sequence of M. sp. strain T29 together with the description of the genome properties and its annotation. The draft genome consists of 608 contigs with a total size of 4,449,424 bp and an average coverage of 150×. The genome exhibits an average G + C content of 68.7 %, and contains 4754 protein coding and 52 RNA genes, including 48 tRNA genes. 71 % of the protein coding genes could be assigned to COG (Clusters of Orthologous Groups) categories. A formerly unknown circular plasmid designated as pT29A was isolated and sequenced separately and found to be 86,856 bp long.