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1.
Comput Methods Programs Biomed ; 255: 108325, 2024 Jul 14.
Article in English | MEDLINE | ID: mdl-39053351

ABSTRACT

BACKGROUND AND OBJECTIVE: Fractional Flow Reserve (FFR) is generally considered the gold standard in hemodynamics to assess the impact of a stenosis on the blood flow. The standard procedure to measure involves the displacement of a pressure guide along the circulatory system until it is placed next to the lesion to be analyzed. The main objective of the present study is to analyze the influence of the pressure guide on the invasive FFR measurements and its implications in clinical practice. METHODS: We studied the influence of pressure wires on the measurement of Fractional Flow Reserve (FFR) through a combination of Computational Fluid Dynamics (CFD) simulations using 45 clinical patient data with 58 lesions and ideal geometries. The analysis is conducted considering patients that were subjected to a computer tomography and also have direct measurements using a pressure guide. Influence of the stenosis severity, degree of occlusion and blood viscosity has also been studied. RESULTS: The influence of pressure wires specifically affects severe stenosis with a lumen diameter reduction of 50 % or greater. This type of stenosis leads to reduced hyperemic flow and increased coronary pressure drop. Thus, we identified that the placement of wires during FFR measurements results in partial obstruction of the coronary artery lumen, leading to increased pressure drop and subsequent reduction in blood flow. The severity of low FFR values associated with severe stenosis may be prone to overestimation when compared to stenosis without severe narrowing. These results have practical implications, particularly in the interpretation of lesions falling within the "gray zone" (0,75-0,80). CONCLUSIONS: The pressure wire's presence significantly alters the flow on severe lesions, which has an impact on the FFR calculation. In contrast, the impact of the pressure wire appears to be reduced when the FFR is larger than 0.8. The findings provide critical information for physicians, emphasizing the need for cautious interpretation of FFR values, particularly in severe stenosis. It also offers insights into improving the correlation between FFRct models and invasive measurements by incorporating the influence of pressure wires.

2.
Ear Hear ; 45(4): 1033-1044, 2024.
Article in English | MEDLINE | ID: mdl-38439150

ABSTRACT

OBJECTIVES: Canalith repositioning procedures to treat benign paroxysmal positional vertigo are often applied following standardized criteria, without considering the possible anatomical singularities of the membranous labyrinth for each individual. As a result, certain patients may become refractory to the treatment due to significant deviations from the ideal membranous labyrinth, that was considered when the maneuvers were designed. This study aims to understand the dynamics of the endolymphatic fluid and otoconia, within the membranous labyrinth geometry, which may contribute to the ineffectiveness of the Epley maneuver. Simultaneously, the study seeks to explore methods to avoid or reduce treatment failure. DESIGN: We conducted a study on the Epley maneuver using numerical simulations based on a three-dimensional medical image reconstruction of the human left membranous labyrinth. A high-quality micro-computed tomography of a human temporal bone specimen was utilized for the image reconstruction, and a mathematical model for the endolymphatic fluid was developed and coupled with a spherical particle model representing otoconia inside the fluid. This allowed us to measure the position and time of each particle throughout all the steps of the maneuver, using equations that describe the physics behind benign paroxysmal positional vertigo. RESULTS: Numerical simulations of the standard Epley maneuver applied to this membranous labyrinth model yielded unsatisfactory results, as otoconia do not reach the frontside of the utricle, which in this study is used as the measure of success. The resting times between subsequent steps indicated that longer intervals are required for smaller otoconia. Using different angles of rotation can prevent otoconia from entering the superior semicircular canal or the posterior ampulla. Steps 3, 4, and 5 exhibited a heightened susceptibility to failure, as otoconia could be accidentally displaced into these regions. CONCLUSIONS: We demonstrate that modifying the Epley maneuver based on the numerical results obtained in the membranous labyrinth of the human specimen under study can have a significant effect on the success or failure of the treatment. The use of numerical simulations appears to be a useful tool for future canalith repositioning procedures that aim to personalize the treatment by modifying the rotation planes currently defined as the standard criteria.


Subject(s)
Benign Paroxysmal Positional Vertigo , Humans , Benign Paroxysmal Positional Vertigo/physiopathology , Benign Paroxysmal Positional Vertigo/diagnostic imaging , X-Ray Microtomography , Computer Simulation , Temporal Bone/diagnostic imaging , Otolithic Membrane/physiology , Imaging, Three-Dimensional , Endolymph/physiology , Ear, Inner/diagnostic imaging , Semicircular Canals/diagnostic imaging , Semicircular Canals/physiology , Patient Positioning/methods
3.
Comput Biol Med ; 163: 107225, 2023 09.
Article in English | MEDLINE | ID: mdl-37437361

ABSTRACT

The Head Impulse Test, the most widely accept test to assess the vestibular function, comprises rotations of the head based on idealized orientations of the semicircular canals, instead of their individual arrangement specific for each patient. In this study, we show how computational modelling can help personalize the diagnosis of vestibular diseases. Based on a micro-computed tomography reconstruction of the human membranous labyrinth and their simulation using Computational Fluid Dynamics and Fluid-Solid Interaction techniques, we evaluated the stimulus experienced by the six cristae ampullaris under different rotational conditions mimicking the Head Impulse Test. The results show that the maximum stimulation of the crista ampullaris occurs for directions of rotation that are more aligned with the orientation of the cupulae (average deviation from alignment of 4.7°, 9.8°, and 19.4° for the horizontal, posterior, and superior maxima, respectively) than with the planes of the semicircular canals (average deviation from alignment of 32.4°, 70.5°, and 67.8° for the horizontal, posterior, and superior maxima, respectively). A plausible explanation is that when rotations are applied with respect to the center of the head, the inertial forces acting directly over the cupula become dominant over the endolymphatic fluid forces generated in the semicircular canals. Our results indicate that it is necessary to consider cupulae orientation to ensure optimal conditions for testing the vestibular function.


Subject(s)
Computer Simulation , Head Impulse Test , Semicircular Ducts , Humans , Semicircular Ducts/diagnostic imaging , Semicircular Canals , X-Ray Microtomography , Vestibular Diseases , Precision Medicine
4.
Phys Rev E ; 105(6-2): 065104, 2022 Jun.
Article in English | MEDLINE | ID: mdl-35854486

ABSTRACT

The onset of viscous fingering in the presence of a viscosity profile is investigated theoretically for two immiscible fluids undergoing a time-dependent injection. Here, we show that the presence of a positive viscosity gradient at the interface between both fluids stabilizes the interface facilitating the spread of the perturbation. This effect is much more pronounced in the case of sinusoidal injection flows. The influence of the viscosity gradient on the dispersion relation is analyzed. Numerical simulations of the Navier-Stokes equation confirm the linear stability analysis.

5.
Sci Total Environ ; 822: 153338, 2022 May 20.
Article in English | MEDLINE | ID: mdl-35092776

ABSTRACT

Marine debris is a growing problem in recent years due to population growth around the world. The incorrect management of plastic waste causes these bodies reach the seas and oceans, becoming a worldwide problem. Once they reach the seas and oceans, they begin a long period of degradation, moving from a macro state (plastics whose diameter is greater than 0.5 cm) to a micro state (diameter less than 0.5 cm). The microplastics spread throughout the oceans, entering the food chain of marine species and, subsequently, of humans. Therefore, it is important to stop the problem while it remains at the macroscale. In this work, a validation of a recently developed Lagrangian computational model to track the movement of macro plastics in seas and oceans is presented. This validation is performed on a regional scale, in the Ría de Arousa, one of the most important estuaries for mussel cultivation in northwestern Spain. During mussel cultivation in rafts, a type of floating plastic stick are released, the mussel-pegs. The potential of this study is that we can compare the accumulation results of the model with the accumulation data collected on the Galician beaches. In a general framework, the influence of wind on the spatial distribution of the accumulations given by the model was observed. For the monitoring data, similar results were found for the accumulation trends over the entire total period. For the monthly representation, some discrepancies were observed. These differences can be attributed to particular synoptic situations, poor reproduction of the coastline or to the very orientation of the study area with respect to the intertidal dynamics.


Subject(s)
Bivalvia , Water Pollutants, Chemical , Animals , Environmental Monitoring/methods , Humans , Microplastics , Oceans and Seas , Plastics , Spain , Waste Products/analysis , Water Pollutants, Chemical/analysis
6.
PLoS Comput Biol ; 15(8): e1007238, 2019 08.
Article in English | MEDLINE | ID: mdl-31381556

ABSTRACT

Seemingly minor details of mathematical and computational models of evolution are known to change the effect of population structure on the outcome of evolutionary processes. For example, birth-death dynamics often result in amplification of selection, while death-birth processes have been associated with suppression. In many biological populations the interaction structure is not static. Instead, members of the population are in motion and can interact with different individuals at different times. In this work we study populations embedded in a flowing medium; the interaction network is then time dependent. We use computer simulations to investigate how this dynamic structure affects the success of invading mutants, and compare these effects for different coupled birth and death processes. Specifically, we show how the speed of the motion impacts the fixation probability of an invading mutant. Flows of different speeds interpolate between evolutionary dynamics on fixed heterogeneous graphs and well-stirred populations; this allows us to systematically compare against known results for static structured populations. We find that motion has an active role in amplifying or suppressing selection by fragmenting and reconnecting the interaction graph. While increasing flow speeds suppress selection for most evolutionary models, we identify characteristic responses to flow for the different update rules we test. In particular we find that selection can be maximally enhanced or suppressed at intermediate flow speeds.


Subject(s)
Biological Evolution , Models, Biological , Mutation , Algorithms , Animals , Computational Biology , Computer Simulation , Escherichia coli/genetics , Evolution, Molecular , Genetics, Population/statistics & numerical data , Humans , Models, Genetic , Motion , Population Dynamics/statistics & numerical data , Probability , Selection, Genetic
7.
Sci Rep ; 8(1): 4068, 2018 03 06.
Article in English | MEDLINE | ID: mdl-29511246

ABSTRACT

In evolutionary dynamics, the notion of a 'well-mixed' population is usually associated with all-to-all interactions at all times. This assumption simplifies the mathematics of evolutionary processes, and makes analytical solutions possible. At the same time the term 'well-mixed' suggests that this situation can be achieved by physically stirring the population. Using simulations of populations in chaotic flows, we show that in most cases this is not true: conventional well-mixed theories do not predict fixation probabilities correctly, regardless of how fast or thorough the stirring is. We propose a new analytical description in the fast-flow limit. This approach is valid for processes with global and local selection, and accurately predicts the suppression of selection as competition becomes more local. It provides a modelling tool for biological or social systems with individuals in motion.


Subject(s)
Biological Evolution , Genetics, Population/methods , Models, Statistical , Population Dynamics , Selection, Genetic , Computer Simulation
8.
Sci Rep ; 8(1): 2795, 2018 02 12.
Article in English | MEDLINE | ID: mdl-29434229

ABSTRACT

Understanding hemodynamics in blood circulation is crucial in order to unveil the mechanisms underlying the formation of stenosis and atherosclerosis. In fact, there are experimental evidences pointing out to the existence of some given vessel configurations that are more likely to develop the above mentioned pathologies. Along this manuscript, we performed an exhaustive investigation in a simplified model aiming to characterize by means of physical quantities those regions and configurations in vessel bifurcations that are more likely to develop such pathologies. The two-fold analysis is based, on the one hand, on numerical simulations (via CFD) and, on the other hand, on experiments realized in an ad-hoc designed polydimethylsiloxane (PDMS) channel with the appropriate parameters and appropriate fluid flows. The results obtained demonstrate that low velocity regions and low shear stress zones are located in the outer walls of bifurcations. In fact, we found that there is a critical range of bifurcation angles that is more likely to vascular disease than the others in correspondence with some experimental evidence. The effect of the inflow velocity on this critical range is also analyzed.


Subject(s)
Arteries/physiology , Blood Flow Velocity/physiology , Vascular Diseases/etiology , Atherosclerosis , Computer Simulation , Hemodynamics/physiology , Humans , Hydrodynamics , Models, Cardiovascular , Models, Theoretical , Risk Factors , Stress, Mechanical
9.
Phys Rev E ; 93(2): 023107, 2016 Feb.
Article in English | MEDLINE | ID: mdl-26986413

ABSTRACT

The motion of contracting and expanding bubbles in an incompressible chaotic flow is analyzed in terms of the finite-time Lyapunov exponents. The viscous forces acting on the bubble surface depend not only on the relative acceleration but also on the time dependence of the bubble volume, which is modeled by the Rayleigh-Plesset equation. The effect of bubble coalescence on the coherent structures that develop in the flow is studied using a simplified bubble merger model. Contraction and expansion of the bubbles is favored in the vicinity of the coherent structures. Time evolution of coalescence bubbles follows a Lévy distribution with an exponent that depends on the initial distance between bubbles. Mixing patterns were found to depend heavily on merging and on the time-dependent volume of the bubbles.

10.
Article in English | MEDLINE | ID: mdl-26066228

ABSTRACT

Clustering of inertial particles is analyzed in chaotic compressible flows. A simplified dynamical model for the motion of inertial particles in a compressible flow has been derived. Clustering enhancement has been observed for intermediate Stokes times and characterized in terms of the number of particles with negative finite-time Lyapunov exponents and the Lyapunov dimension of the model attractor. Cluster formation has been observed to depend on the nature of the flow; vortical or shear. The motion of heavy and light particles is analyzed in terms of the compressibility and correlation length of the density field.

11.
Chaos ; 25(6): 063105, 2015 Jun.
Article in English | MEDLINE | ID: mdl-26117099

ABSTRACT

We show that filamentous Atmospheric Rivers (ARs) over the Northern Atlantic Ocean are closely linked to attracting Lagrangian Coherent Structures (LCSs) in the large scale wind field. The detected LCSs represent lines of attraction in the evolving flow with a significant impact on all passive tracers. Using Finite-Time Lyapunov Exponents, we extract LCSs from a two-dimensional flow derived from water vapor flux of atmospheric reanalysis data and compare them to the three-dimensional LCS obtained from the wind flow. We correlate the typical filamentous water vapor patterns of ARs with LCSs and find that LCSs bound the filaments on the back side. Passive advective transport of water vapor in the AR from tropical latitudes is potentially possible.

12.
Article in English | MEDLINE | ID: mdl-25353555

ABSTRACT

The effect of compressibility on the mixing of Lagrangian tracers is analyzed in chaotic stirred flows. Mixing is studied in terms of the finite-time Lyapunov exponents. Mixing and clustering of passive tracers surrounded by Lagrangian coherent structures is observed to increase with compressibility intensity. The role of the stirring rate and compressibility on mixing and clustering has been analyzed.

13.
Phys Rev E Stat Nonlin Soft Matter Phys ; 75(4 Pt 2): 046209, 2007 Apr.
Article in English | MEDLINE | ID: mdl-17500980

ABSTRACT

The effect of a time-periodic chaotic shear flow on an excitable chemical medium is studied numerically. Stirring effects on pattern formation strongly depend on the shear amplitude and the ratio of the advective and chemical time scales (Damköhler number, Da). We have observed that the wave period increases with decreasing Da below some critical value, afterwards the period decreases until complete wave annihilation. In the last case, before final extinction, a set of uncorrelated, nonstationary excitable dots survive, whose number depends on the mixing rate. Insights on the nature of this critical behavior are obtained through the calculation of the mixing efficiency of the flow.

14.
Phys Rev E Stat Nonlin Soft Matter Phys ; 72(4 Pt 2): 045205, 2005 Oct.
Article in English | MEDLINE | ID: mdl-16383460

ABSTRACT

We investigate the self-organization of two-dimensional activator-inhibitor discrete bistable systems in the neighborhood of a nonequilibrium Ising-Bloch bifurcation. The system exhibits an anomalous transition--induced by discretization--whose signature is the coexistence of Ising and Bloch walls for selected values of the spatial coupling. After curvature reduction of Bloch walls, coexistence gives rise to a unique and striking spatiotemporal dynamics: Bloch walls drive the motion and Ising walls play the role of "extended defects" oriented along the background grid directions. Strong enough external noise asymptotically restores the scenario found in the continuum limit.

15.
Phys Rev E Stat Nonlin Soft Matter Phys ; 71(6 Pt 2): 065602, 2005 Jun.
Article in English | MEDLINE | ID: mdl-16089811

ABSTRACT

Numerical evidence is presented of a coherence-resonant behavior, induced on an atmospheric global circulation model by a white (in time and space) additive Gaussian noise with amplitude A << 1 . Intermediate A values enhance the spatiotemporal regularity of vortical patterns that contribute to the intra-annual variability of the atmospheric component of the climate. Only weak patterns (those appearing in the summer hemisphere) become ordered by noise.

16.
Chaos ; 13(3): 812-23, 2003 Sep.
Article in English | MEDLINE | ID: mdl-12946172

ABSTRACT

Traveling fronts are shown to occur in an array of nearest-neighbor coupled symmetric bistable units. When the local dynamics is given by the Lorenz equations we observe the route: standing-->oscillating-->traveling front, as the coupling is increased. A key step in this route is a gluing bifurcation of two cycles in cylindrical coordinates. When this is mediated by a saddle with real leading eigenvalues, the asymptotic behavior of the front velocity is found straightforwardly. If the saddle is focus-type instead, the front's dynamics may become quite complex, displaying several oscillating and propagating regimes and including (Shil'nikov-type) chaotic front propagation. These results stand as well for other nearest-neighbor coupling schemes and local dynamics.

17.
Chaos ; 13(3): 913-20, 2003 Sep.
Article in English | MEDLINE | ID: mdl-12946183

ABSTRACT

Spatiotemporal stochastic forcing of an ensemble system consisting of chaotic Lorenz cells diffusively coupled is analyzed. The nontrivial effects of time and length correlations on the ensemble mean error and spread are studied and the implications to new trends in weather forecast methodologies are discussed. A maximum for the forecast scores is observed to occur for specific values of time and length correlations. This maximum is studied in terms of an interplay between the natural scales occurring in the system and the noise parameters.


Subject(s)
Nonlinear Dynamics , Forecasting , Models, Statistical , Models, Theoretical , Time Factors , Weather
18.
Chaos ; 11(2): 371-376, 2001 Jun.
Article in English | MEDLINE | ID: mdl-12779471

ABSTRACT

The effect of time-correlated and white Gaussian noises of low intensity on one-dimensional arrays consisting of diffusively coupled chaotic cells is analyzed. An improvement or worsening of the synchronization between cells of the array driven by low-intensity colored noise is observed for a resonant interval of time correlation values. A comparison between colored and white noise and additive and multiplicative contribution has been carried out investigating the nonlinear cooperative effects of noise strength, correlation time, and coupling strength to control spatiotemporal chaos in coupled arrays of chaotic cells. The possibility to distinguish highly correlated areas of a diffusively coupled network of cells by using low-intensity time correlated noise is discussed. (c) 2001 American Institute of Physics.

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