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1.
Int J Comput Assist Radiol Surg ; 18(7): 1159-1166, 2023 Jul.
Article in English | MEDLINE | ID: mdl-37162735

ABSTRACT

PURPOSE: US-guided percutaneous focal liver tumor ablations have been considered promising curative treatment techniques. To address cases with invisible or poorly visible tumors, registration of 3D US with CT or MRI is a critical step. By taking advantage of deep learning techniques to efficiently detect representative features in both modalities, we aim to develop a 3D US-CT/MRI registration approach for liver tumor ablations. METHODS: Facilitated by our nnUNet-based 3D US vessel segmentation approach, we propose a coarse-to-fine 3D US-CT/MRI image registration pipeline based on the liver vessel surface and centerlines. Then, phantom, healthy volunteer and patient studies are performed to demonstrate the effectiveness of our proposed registration approach. RESULTS: Our nnUNet-based vessel segmentation model achieved a Dice score of 0.69. In healthy volunteer study, 11 out of 12 3D US-MRI image pairs were successfully registered with an overall centerline distance of 4.03±2.68 mm. Two patient cases achieved target registration errors (TRE) of 4.16 mm and 5.22 mm. CONCLUSION: We proposed a coarse-to-fine 3D US-CT/MRI registration pipeline based on nnUNet vessel segmentation models. Experiments based on healthy volunteers and patient trials demonstrated the effectiveness of our registration workflow. Our code and example data are publicly available in this r epository.


Subject(s)
Liver Neoplasms , Tomography, X-Ray Computed , Humans , Tomography, X-Ray Computed/methods , Magnetic Resonance Imaging/methods , Liver Neoplasms/diagnostic imaging , Liver Neoplasms/surgery , Liver Neoplasms/pathology , Imaging, Three-Dimensional/methods , Image Processing, Computer-Assisted/methods
2.
Phys Med Biol ; 68(8)2023 04 05.
Article in English | MEDLINE | ID: mdl-36893468

ABSTRACT

Objective. The treatment of glioblastoma (GBM) using low intensity electric fields (∼1 V cm-1) is being investigated using multiple implanted bioelectrodes, which was termed intratumoral modulation therapy (IMT). Previous IMT studies theoretically optimized treatment parameters to maximize coverage with rotating fields, which required experimental investigation. In this study, we employed computer simulations to generate spatiotemporally dynamic electric fields, designed and purpose-built an IMT device forin vitroexperiments, and evaluated the human GBM cellular responses to these fields.Approach. After measuring the electrical conductivity of thein vitroculturing medium, we designed experiments to evaluate the efficacy of various spatiotemporally dynamic fields: (a) different rotating field magnitudes, (b) rotating versus non-rotating fields, (c) 200 kHz versus 10 kHz stimulation, and (d) constructive versus destructive interference. A custom printed circuit board (PCB) was fabricated to enable four-electrode IMT in a 24-well plate. Patient derived GBM cells were treated and analyzed for viability using bioluminescence imaging.Main results. The optimal PCB design had electrodes placed 6.3 mm from the center. Spatiotemporally dynamic IMT fields at magnitudes of 1, 1.5, and 2 V cm-1reduced GBM cell viability to 58%, 37% and 2% of sham controls respectively. Rotating versus non-rotating, and 200 kHz versus 10 kHz fields showed no statistical difference. The rotating configuration yielded a significant reduction (p< 0.01) in cell viability (47 ± 4%) compared to the voltage matched (99 ± 2%) and power matched (66 ± 3%) destructive interference cases.Significance. We found the most important factors in GBM cell susceptibility to IMT are electric field strength and homogeneity. Spatiotemporally dynamic electric fields have been evaluated in this study, where improvements to electric field coverage with lower power consumption and minimal field cancellations has been demonstrated. The impact of this optimized paradigm on cell susceptibility justifies its future use in preclinical and clinical trial investigations.


Subject(s)
Brain Neoplasms , Electric Stimulation Therapy , Glioblastoma , Humans , Electric Stimulation Therapy/methods , Brain Neoplasms/therapy , Glioblastoma/radiotherapy , Electric Conductivity
3.
Med Phys ; 49(9): 6055-6067, 2022 Sep.
Article in English | MEDLINE | ID: mdl-35754362

ABSTRACT

BACKGROUND: The use of non-ionizing electric fields from low-intensity voltage sources (< 10 V) to control malignant tumor growth is showing increasing potential as a cancer treatment modality. A method of applying these low-intensity electric fields using multiple implanted electrodes within or adjacent to tumor volumes has been termed as intratumoral modulation therapy (IMT). PURPOSE: This study explores advancements in the previously established IMT optimization algorithm, and the development of a custom treatment planning system for patient-specific IMT. The practicality of the treatment planning system is demonstrated by implementing the full optimization pipeline on a brain phantom with robotic electrode implantation, postoperative imaging, and treatment stimulation. METHODS: The integrated planning pipeline in 3D Slicer begins with importing and segmenting patient magnetic resonance images (MRI) or computed tomography (CT) images. The segmentation process is manual, followed by a semi-automatic smoothing step that allows the segmented brain and tumor mesh volumes to be smoothed and simplified by applying selected filters. Electrode trajectories are planned manually on the patient MRI or CT by selecting insertion and tip coordinates for a chosen number of electrodes. The electrode tip positions and stimulation parameters (phase shift and voltage) can then be optimized with the custom semi-automatic IMT optimization algorithm where users can select the prescription electric field, voltage amplitude limit, tissue electrical properties, nearby organs at risk, optimization parameters (electrode tip location, individual contact phase shift and voltage), desired field coverage percent, and field conformity optimization. Tables of optimization results are displayed, and the resulting electric field is visualized as a field-map superimposed on the MR or CT image, with 3D renderings of the brain, tumor, and electrodes. Optimized electrode coordinates are transferred to robotic electrode implantation software to enable planning and subsequent implantation of the electrodes at the desired trajectories. RESULTS: An IMT treatment planning system was developed that incorporates patient-specific MRI or CT, segmentation, volume smoothing, electrode trajectory planning, electrode tip location and stimulation parameter optimization, and results visualization. All previous manual pipeline steps operating on diverse software platforms were coalesced into a single semi-automated 3D Slicer-based user interface. Brain phantom validation of the full system implementation was successful in preoperative planning, robotic electrode implantation, and postoperative treatment planning to adjust stimulation parameters based on actual implant locations. Voltage measurements were obtained in the brain phantom to determine the electrical parameters of the phantom and validate the simulated electric field distribution. CONCLUSIONS: A custom treatment planning and implantation system for IMT has been developed in this study and validated on a phantom brain model, providing an essential step in advancing IMT technology toward future clinical safety and efficacy investigations.


Subject(s)
Brain Neoplasms , Magnetic Resonance Imaging , Brain/surgery , Brain Neoplasms/diagnostic imaging , Brain Neoplasms/surgery , Electrodes , Electrodes, Implanted , Humans , Magnetic Resonance Imaging/methods , Tomography, X-Ray Computed/methods
4.
IEEE Trans Med Imaging ; 41(11): 3344-3356, 2022 11.
Article in English | MEDLINE | ID: mdl-35724283

ABSTRACT

Complete tumor coverage by the thermal ablation zone and with a safety margin (5 or 10 mm) is required to achieve the entire tumor eradication in liver tumor ablation procedures. However, 2D ultrasound (US) imaging has limitations in evaluating the tumor coverage by imaging only one or multiple planes, particularly for cases with multiple inserted applicators or irregular tumor shapes. In this paper, we evaluate the intra-procedural tumor coverage using 3D US imaging and investigate whether it can provide clinically needed information. Using data from 14 cases, we employed surface- and volume-based evaluation metrics to provide information on any uncovered tumor region. For cases with incomplete tumor coverage or uneven ablation margin distribution, we also proposed a novel margin uniformity -based approach to provide quantitative applicator adjustment information for optimization of tumor coverage. Both the surface- and volume-based metrics showed that 5 of 14 cases had incomplete tumor coverage according to the estimated ablation zone. After applying our proposed applicator adjustment approach, the simulated results showed that 92.9% (13 of 14) cases achieved 100% tumor coverage and the remaining case can benefit by increasing the ablation time or power. Our proposed method can evaluate the intra-procedural tumor coverage and intuitively provide applicator adjustment information for the physician. Our 3D US-based method is compatible with the constraints of conventional US-guided ablation procedures and can be easily integrated into the clinical workflow.


Subject(s)
Catheter Ablation , Liver Neoplasms , Humans , Ultrasonography , Liver Neoplasms/diagnostic imaging , Liver Neoplasms/surgery , Imaging, Three-Dimensional/methods , Radionuclide Imaging , Catheter Ablation/methods
5.
Ultrasound Med Biol ; 48(7): 1290-1298, 2022 07.
Article in English | MEDLINE | ID: mdl-35487839

ABSTRACT

Transcatheter cardiovascular interventions have the advantage of patient safety, reduced surgery time and minimal trauma to the patient's body. Transcathether interventions, which are performed percutaneously, are limited by the lack of direct line of sight with the procedural tools and the patient anatomy. Therefore, such interventional procedures rely heavily on image guidance for navigating toward and delivering therapy at the target site. Vascular navigation via the inferior vena cava, from the groin to the heart, is an imperative part of most transcatheter cardiovascular interventions including heart valve repair surgeries and ablation therapy. Traditionally, the inferior vena cava is navigated using fluoroscopic techniques such as venography and computed tomography venography. These X-ray-based techniques can have detrimental effects on the patient as well as the surgical team, causing increased radiation exposure, leading to risk of cancer, fetal defects and eye cataracts. The use of a heavy lead apron has also been reported to cause back pain and spine issues, thus leading to interventionalist's disc disease. We propose the use of a catheter-based ultrasound augmented with electromagnetic tracking technology to generate a vascular roadmap in real time and perform navigation without harmful radiation. In this pilot study, we used spatially tracked intracardiac echocardiography to reconstruct a vessel from a phantom in a 3-D virtual environment. We illustrate how the proposed ultrasound-based navigation will appear in a virtual environment, by navigating a tracked guidewire within the vessels in the phantom without any radiation-based imaging. The geometric accuracy is assessed using a computed tomography scan of the phantom, with a Dice coefficient of 0.79. The average distance between the surfaces of the two models comes out to be 1.7 ± 1.12 mm.


Subject(s)
Heart , Surgery, Computer-Assisted , Equipment Design , Humans , Phantoms, Imaging , Pilot Projects , Ultrasonography
6.
J Imaging ; 8(1)2022 Jan 07.
Article in English | MEDLINE | ID: mdl-35049848

ABSTRACT

While ultrasound (US) guidance has been used during central venous catheterization to reduce complications, including the puncturing of arteries, the rate of such problems remains non-negligible. To further reduce complication rates, mixed-reality systems have been proposed as part of the user interface for such procedures. We demonstrate the use of a surgical navigation system that renders a calibrated US image, and the needle and its trajectory, in a common frame of reference. We compare the effectiveness of this system, whereby images are rendered on a planar monitor and within a head-mounted display (HMD), to the standard-of-care US-only approach, via a phantom-based user study that recruited 31 expert clinicians and 20 medical students. These users performed needle-insertions into a phantom under the three modes of visualization. The success rates were significantly improved under HMD-guidance as compared to US-guidance, for both expert clinicians (94% vs. 70%) and medical students (70% vs. 25%). Users more consistently positioned their needle closer to the center of the vessel's lumen under HMD-guidance compared to US-guidance. The performance of the clinicians when interacting with this monitor system was comparable to using US-only guidance, with no significant difference being observed across any metrics. The results suggest that the use of an HMD to align the clinician's visual and motor fields promotes successful needle guidance, highlighting the importance of continued HMD-guidance research.

7.
IEEE Trans Med Imaging ; 41(7): 1651-1664, 2022 07.
Article in English | MEDLINE | ID: mdl-35085075

ABSTRACT

Stereo matching has become an active area of research in the field of computer vision. In minimally invasive surgery, stereo matching provides depth information to surgeons, with the potential to increase the safety of surgical procedures, particularly those performed laparoscopically. Many stereo matching methods have been reported to perform well for natural images, but for images acquired during a laparoscopic procedure, they are limited by image characteristics including illumination differences, weak texture content, specular highlights, and occlusions. To overcome these limitations, we propose a robust edge-preserving stereo matching method for laparoscopic images, comprising an efficient sparse-dense feature matching step, left and right image illumination equalization, and refined disparity optimization. We validated the proposed method using both benchmark biological phantoms and surgical stereoscopic data. Experimental results illustrated that, in the presence of heavy illumination differences between image pairs, texture and textureless surfaces, specular highlights and occlusions, our proposed approach consistently obtains a more accurate estimate of the disparity map than state-of-the-art stereo matching methods in terms of robustness and boundary preservation.


Subject(s)
Algorithms , Laparoscopy , Imaging, Three-Dimensional/methods , Lighting , Phantoms, Imaging
8.
Brain Struct Funct ; 227(1): 393-405, 2022 Jan.
Article in English | MEDLINE | ID: mdl-34687354

ABSTRACT

Establishing spatial correspondence between subject and template images is necessary in neuroimaging research and clinical applications such as brain mapping and stereotactic neurosurgery. Our anatomical fiducial (AFID) framework has recently been validated to serve as a quantitative measure of image registration based on salient anatomical features. In this study, we sought to apply the AFIDs protocol to the clinic, focusing on structural magnetic resonance images obtained from patients with Parkinson's disease (PD). We confirmed AFIDs could be placed to millimetric accuracy in the PD dataset with results comparable to those in normal control subjects. We evaluated subject-to-template registration using this framework by aligning the clinical scans to standard template space using a robust open preprocessing workflow. We found that registration errors measured using AFIDs were higher than previously reported, suggesting the need for optimization of image processing pipelines for clinical grade datasets. Finally, we examined the utility of using point-to-point distances between AFIDs as a morphometric biomarker of PD, finding evidence of reduced distances between AFIDs that circumscribe regions known to be affected in PD including the substantia nigra. Overall, we provide evidence that AFIDs can be successfully applied in a clinical setting and utilized to provide localized and quantitative measures of registration error. AFIDs provide clinicians and researchers with a common, open framework for quality control and validation of spatial correspondence and the location of anatomical structures, facilitating aggregation of imaging datasets and comparisons between various neurological conditions.


Subject(s)
Parkinson Disease , Brain Mapping , Humans , Image Processing, Computer-Assisted , Imaging, Three-Dimensional , Magnetic Resonance Imaging , Parkinson Disease/diagnostic imaging
9.
Can Assoc Radiol J ; 73(2): 396-402, 2022 May.
Article in English | MEDLINE | ID: mdl-34328021

ABSTRACT

PURPOSE: Assessment of patients for temporal lobe epilepsy (TLE) surgery requires multimodality input, including EEG recordings to ensure optimal surgical planning. Often EEG demonstrates abnormal foci not detected on 1.5T MRI. Ultra-high field MRI at 7T provides improved resolution of the brain. We investigated the utility of 7T MRI to detect potential anatomical abnormalities associated with EEG changes. METHODS: Ultra-high field data were acquired on a 7T MRI scanner for 13 patients with history of drug resistant TLE who had had EEG telemetry recordings. Qualitative evaluation of 7T imaging for presence of focal abnormalities detected on EEG was performed. Correlation of 7T MRI findings with EEG recordings of focal slowing or interictal epileptic spikes (IEDs), and seizures was performed. RESULTS: Assessment of 7T MRI demonstrated concordance with TLE as determined by the multidisciplinary team in 61.5% of cases (n = 8). Among these, 3 patients exhibited supportive abnormal 7T MRI abnormalities not detected by 1.5T MRI. In patients who underwent surgery, 72.7% had concordant histopathology findings with 7T MRI findings (n = 8). However, qualitative assessment of 7T images revealed focal anatomical abnormalities to account for EEG findings in only 15.4% of patients (n = 2). Other regions that were found to have localized IEDs in addition to the lesional temporal lobe, included the contralateral temporal lobe (n = 5), frontal lobe (n = 3), and parieto-occipital lobe (n = 2). CONCLUSION: Ultra-high field 7T MRI findings show concordance with clinical data. However, 7T MRI did not reveal anatomical findings to account for abnormalities detected by EEG.


Subject(s)
Epilepsy, Temporal Lobe , Epilepsy , Electroencephalography , Epilepsy/diagnostic imaging , Epilepsy/surgery , Epilepsy, Temporal Lobe/diagnostic imaging , Epilepsy, Temporal Lobe/surgery , Humans , Magnetic Resonance Imaging/methods , Temporal Lobe
10.
Sci Rep ; 11(1): 15576, 2021 08 02.
Article in English | MEDLINE | ID: mdl-34341427

ABSTRACT

Growing evidence suggests an association of lumbar paraspinal muscle morphology with low back pain (LBP) and lumbar pathologies. Unilateral spinal disorders provide unique models to study this association, with implications for diagnosis, prognosis, and management. Statistical shape analysis is a technique that can identify signature shape variations related to phenotypes but has never been employed in studying paraspinal muscle morphology. We present the first investigation using this technique to reveal disease-related paraspinal muscle asymmetry, using MRIs of patients with a single posterolateral disc herniation at the L5-S1 spinal level and unilateral leg pain. Statistical shape analysis was conducted to reveal disease- and phenotype-related morphological variations in the multifidus and erector spinae muscles at the level of herniation and the one below. With the analysis, shape variations associated with disc herniation were identified in the multifidus on the painful side at the level below the pathology while no pathology-related asymmetry in cross-sectional area (CSA) and fatty infiltration was found in either muscle. The results demonstrate higher sensitivity and spatial specificity for the technique than typical CSA and fatty infiltration measures. Statistical shape analysis holds promise in studying paraspinal muscle morphology to improve our understanding of LBP and various lumbar pathologies.


Subject(s)
Intervertebral Disc Displacement/pathology , Lumbar Vertebrae/pathology , Paraspinal Muscles/pathology , Statistics as Topic , Adult , Female , Humans , Intervertebral Disc Displacement/diagnostic imaging , Lumbar Vertebrae/diagnostic imaging , Male , Organ Size , Paraspinal Muscles/diagnostic imaging
11.
Hum Brain Mapp ; 42(14): 4465-4477, 2021 10 01.
Article in English | MEDLINE | ID: mdl-34106502

ABSTRACT

Parkinson's disease (PD) is a progressive neurodegenerative disorder that is characterized by a range of motor and nonmotor symptoms, often with the motor dysfunction initiated unilaterally. Knowledge regarding disease-related alterations in white matter pathways can effectively help improve the understanding of the disease and propose targeted treatment strategies. Microstructural imaging techniques, including diffusion tensor imaging (DTI), allows inspection of white matter integrity to study the pathogenesis of various neurological conditions. Previous voxel-based analyses with DTI measures, such as fractional anisotropy and mean diffusivity have uncovered changes in brain regions that are associated with PD, but the conclusions were inconsistent, partially due to small patient cohorts and the lack of consideration for clinical laterality onset, particularly in early PD. Fixel-based analysis (FBA) is a recent framework that offers tract-specific insights regarding white matter health, but very few FBA studies on PD exist. We present a study that reveals strengthened and weakened white matter integrity that is subject to symptom laterality in a large drug-naïve de novo PD cohort using complementary DTI and FBA measures. The findings suggest that the disease gives rise to tissue degeneration and potential re-organization in the early stage.


Subject(s)
Diffusion Tensor Imaging , Parkinson Disease/pathology , White Matter/pathology , Aged , Cohort Studies , Female , Humans , Male , Middle Aged , Parkinson Disease/diagnostic imaging , White Matter/diagnostic imaging
13.
Comput Med Imaging Graph ; 88: 101850, 2021 03.
Article in English | MEDLINE | ID: mdl-33418302

ABSTRACT

Dual-modality 4D cardiac data visualization can convey a significant amount of complementary image information from various sources into a single and meaningful display. Even though there are existing publications on combining multiple medical images into a unique representation, there has been no work on rendering a series of cardiac image sequences, acquired from multiple sources, using web browsers and synchronizing the result over the Internet in real time. The ability to display multi-modality beating heart images using Web-based technology is hampered by the lack of efficient algorithms for fusing and visualizing constantly updated multi-source images and streaming the rendering results using internet protocols. To address this practical issue, in this paper we introduce a new Internet-based algorithm and a software platform running on a Node.js server, where a series of registered cardiac images from both magnetic resonance (MR) and ultrasound are employed to display dynamic fused cardiac structures in web browsers. Taking advantage of the bidirectional WebSocket protocol and WebGL-based graphics acceleration, internal cardiac structures are dynamically displayed, and the results of rendering and data exploration are synchronized among all the connected client computers. The presented research and software have the potential to provide clinicians with comprehensive information and intuitive feedback relating to cardiac behavior and anatomy and could impact areas such as distributed diagnosis of cardiac function and collaborative treatment planning for various heart diseases.


Subject(s)
Computer Graphics , Software , Algorithms , Humans , Internet , Magnetic Resonance Spectroscopy
14.
IEEE Trans Biomed Eng ; 68(3): 1024-1033, 2021 03.
Article in English | MEDLINE | ID: mdl-32746050

ABSTRACT

Deep brain stimulation (DBS) is an effective therapy as an alternative to pharmaceutical treatments for Parkinson's disease (PD). Aside from factors such as instrumentation, treatment plans, and surgical protocols, the success of the procedure depends heavily on the accurate placement of the electrode within the optimal therapeutic targets while avoiding vital structures that can cause surgical complications and adverse neurologic effects. Although specific surgical techniques for DBS can vary, interventional guidance with medical imaging has greatly contributed to the development, outcomes, and safety of the procedure. With rapid development in novel imaging techniques, computational methods, and surgical navigation software, as well as growing insights into the disease and mechanism of action of DBS, modern image guidance is expected to further enhance the capacity and efficacy of the procedure in treating PD. This article surveys the state-of-the-art techniques in image-guided DBS surgery to treat PD, and discusses their benefits and drawbacks, as well as future directions on the topic.


Subject(s)
Deep Brain Stimulation , Parkinson Disease , Surgery, Computer-Assisted , Humans , Parkinson Disease/diagnostic imaging , Parkinson Disease/therapy , Treatment Outcome
15.
Med Phys ; 47(11): 5441-5454, 2020 Nov.
Article in English | MEDLINE | ID: mdl-32978963

ABSTRACT

PURPOSE: Application of low intensity electric fields to interfere with tumor growth is being increasingly recognized as a promising new cancer treatment modality. Intratumoral modulation therapy (IMT) is a developing technology that uses multiple electrodes implanted within or adjacent tumor regions to deliver electric fields to treat cancer. In this study, the determination of optimal IMT parameters was cast as a mathematical optimization problem, and electrode configurations, programming, optimization, and maximum treatable tumor size were evaluated in the simplest and easiest to understand spherical tumor model. The establishment of electrode placement and programming rules to maximize electric field tumor coverage designed specifically for IMT is the first step in developing an effective IMT treatment planning system. METHODS: Finite element method electric field computer simulations for tumor models with 2 to 7 implanted electrodes were performed to quantify the electric field over time with various parameters, including number of electrodes (2 to 7), number of contacts per electrode (1 to 3), location within tumor volume, and input waveform with relative phase shift between 0 and 2π radians. Homogeneous tissue specific conductivity and dielectric values were assigned to the spherical tumor and surrounding tissue volume. In order to achieve the goal of covering the tumor volume with a uniform threshold of 1 V/cm electric field, a custom least square objective function was used to maximize the tumor volume covered by 1 V/cm time averaged field, while maximizing the electric field in voxels receiving less than this threshold. An additional term in the objective function was investigated with a weighted tissue sparing term, to minimize the field to surrounding tissues. The positions of the electrodes were also optimized to maximize target coverage with the fewest number of electrodes. The complexity of this optimization problem including its non-convexity, the presence of many local minima, and the computational load associated with these stochastic based optimizations led to the use of a custom pattern search algorithm. Optimization parameters were bounded between 0 and 2π radians for phase shift, and anywhere within the tumor volume for location. The robustness of the pattern search method was then evaluated with 50 random initial parameter values. RESULTS: The optimization algorithm was successfully implemented, and for 2 to 4 electrodes, equally spaced relative phase shifts and electrodes placed equidistant from each other was optimal. For 5 electrodes, up to 2.5 cm diameter tumors with 2.0 V, and 4.1 cm with 4.0 V could be treated with the optimal configuration of a centrally placed electrode and 4 surrounding electrodes. The use of 7 electrodes allow for 3.4 cm diameter coverage at 2.0 V and 5.5 cm at 4.0 V. The evaluation of the optimization method using 50 random initial parameter values found the method to be robust in finding the optimal solution. CONCLUSIONS: This study has established a robust optimization method for temporally optimizing electric field tumor coverage for IMT, with the adaptability to optimize a variety of parameters including geometrical and relative phase shift configurations.


Subject(s)
Algorithms , Electricity , Computer Simulation , Electric Conductivity , Electrodes , Electrodes, Implanted
16.
Int J Comput Assist Radiol Surg ; 15(11): 1835-1846, 2020 Nov.
Article in English | MEDLINE | ID: mdl-32839888

ABSTRACT

PURPOSE: In the context of analyzing neck vascular morphology, this work formulates and compares Mask R-CNN and U-Net-based algorithms to automatically segment the carotid artery (CA) and internal jugular vein (IJV) from transverse neck ultrasound (US). METHODS: US scans of the neck vasculature were collected to produce a dataset of 2439 images and their respective manual segmentations. Fourfold cross-validation was employed to train and evaluate Mask RCNN and U-Net models. The U-Net algorithm includes a post-processing step that selects the largest connected segmentation for each class. A Mask R-CNN-based vascular reconstruction pipeline was validated by performing a surface-to-surface distance comparison between US and CT reconstructions from the same patient. RESULTS: The average CA and IJV Dice scores produced by the Mask R-CNN across the evaluation data from all four sets were [Formula: see text] and [Formula: see text]. The average Dice scores produced by the post-processed U-Net were [Formula: see text] and [Formula: see text], for the CA and IJV, respectively. The reconstruction algorithm utilizing the Mask R-CNN was capable of producing accurate 3D reconstructions with majority of US reconstruction surface points being within 2 mm of the CT equivalent. CONCLUSIONS: On average, the Mask R-CNN produced more accurate vascular segmentations compared to U-Net. The Mask R-CNN models were used to produce 3D reconstructed vasculature with a similar accuracy to that of a manually segmented CT scan. This implementation of the Mask R-CNN network enables automatic analysis of the neck vasculature and facilitates 3D vascular reconstruction.


Subject(s)
Carotid Arteries/diagnostic imaging , Image Processing, Computer-Assisted , Jugular Veins/diagnostic imaging , Algorithms , Deep Learning , Humans , Ultrasonography/methods
17.
Hum Brain Mapp ; 41(16): 4500-4517, 2020 11.
Article in English | MEDLINE | ID: mdl-32677751

ABSTRACT

The zona incerta (ZI) is a small gray matter region of the deep brain first identified in the 19th century, yet direct in vivo visualization and characterization has remained elusive. Noninvasive detection of the ZI and surrounding region could be critical to further our understanding of this widely connected but poorly understood deep brain region and could contribute to the development and optimization of neuromodulatory therapies. We demonstrate that high resolution (submillimetric) longitudinal (T1) relaxometry measurements at high magnetic field strength (7 T) can be used to delineate the ZI from surrounding white matter structures, specifically the fasciculus cerebellothalamicus, fields of Forel (fasciculus lenticularis, fasciculus thalamicus, and field H), and medial lemniscus. Using this approach, we successfully derived in vivo estimates of the size, shape, location, and tissue characteristics of substructures in the ZI region, confirming observations only previously possible through histological evaluation that this region is not just a space between structures but contains distinct morphological entities that should be considered separately. Our findings pave the way for increasingly detailed in vivo study and provide a structural foundation for precise functional and neuromodulatory investigation.


Subject(s)
Image Interpretation, Computer-Assisted , Magnetic Resonance Imaging , Neuroimaging , White Matter/anatomy & histology , White Matter/diagnostic imaging , Zona Incerta/anatomy & histology , Zona Incerta/diagnostic imaging , Adult , Aged , Female , Humans , Male , Middle Aged , Young Adult
18.
Int J Comput Assist Radiol Surg ; 15(9): 1513-1523, 2020 Sep.
Article in English | MEDLINE | ID: mdl-32524216

ABSTRACT

PURPOSE: This work aims to develop a simple, anatomically and haptically realistic vascular phantom, compatible with intravascular and intracardiac ultrasound. The low-cost, dual-layered phantom bridges the gap between traditional wall-only and wall-less phantoms by showing both the vessel wall and surrounding tissue in ultrasound imaging. This phantom can better assist clinical tool training, testing of intravascular devices, blood flow studies, and validation of algorithms for intravascular and intracardiac surgical systems. METHODS: Polyvinyl alcohol cryogel (PVA-c) incorporating a scattering agent was used to obtain vessel and tissue-mimicking materials. Our specific design targeted the inferior vena cava and renal bifurcations which were modelled using CAD software. A custom mould and container were 3D-printed for shaping the desired vessel wall. Three phantoms were prepared by varying both the concentrations of scattering agent as well as the number of freeze-thaw cycles to which the phantom layers were subjected during the manufacturing process. Each phantom was evaluated using ultrasound imaging using the Foresight™ ICE probe. Geometrical validation was provided by comparing CAD design to a CT scan of the phantom. RESULTS: The desired vascular phantom was constructed using 2.5% and 0.05% scattering agent concentration in the vessel and tissue-mimicking layers, respectively. Imaging of the three phantoms showed that increasing the number of freeze-thaw cycles did not significantly enhance the image contrast. Comparison of the US images with their CT equivalents resulted in an average error of 0.9[Formula: see text] for the lumen diameter. CONCLUSION: The phantom is anatomically realistic when imaged with intracardiac ultrasound and provides a smooth lumen for the ultrasound probe and catheter to manoeuvre. The vascular phantom enables validation of intravascular and intracardiac image guidance systems. The simple construction technique also provides a workflow for designing complex, multi-layered arterial phantoms.


Subject(s)
Diagnosis, Computer-Assisted/methods , Heart/diagnostic imaging , Phantoms, Imaging , Algorithms , Arteries , Cryogels , Equipment Design , Humans , Materials Testing , Polyesters , Polyvinyl Alcohol , Scattering, Radiation , Silicones , Software , Tomography, X-Ray Computed , Ultrasonography
19.
Int J Comput Assist Radiol Surg ; 15(5): 749-757, 2020 May.
Article in English | MEDLINE | ID: mdl-32314227

ABSTRACT

PURPOSE: Traditional training for percutaneous renal access (PCA) relies on apprenticeship, which raises concerns about patient safety, limited training opportunities, and inconsistent quality of feedback. In this study, we proposed the development of a novel augmented reality (AR) simulator for ultrasound (US)-guided PCA and evaluated its validity and efficacy as a teaching tool. METHODS: Our AR simulator allows the user to practice PCA on a silicone phantom using a tracked needle and US probe emulator under the guidance of simulated US on a tablet screen. 6 Expert and 24 novice participants were recruited to evaluate the efficacy of our simulator. RESULTS: Experts highly rated the realism and usefulness of our simulator, reflected by the average face validity score of 4.39 and content validity score of 4.53 on a 5-point Likert scale. Comparisons with a Mann-Whitney U test revealed significant differences [Formula: see text] in performances between the experts and novices on 6 out of 7 evaluation metrics, demonstrating strong construct validity. Furthermore, a paired T-test indicated significant performance improvements [Formula: see text] of the novices in both objective and subjective evaluation after training with our simulator. CONCLUSION: Our cost-effective, flexible, and easily customizable AR training simulator can provide opportunities for trainees to acquire basic skills of US-guided PCA in a safe and stress-free environment. The effectiveness of our simulator is demonstrated through strong face, content, and construct validity, indicating its value as a novel training tool.


Subject(s)
Augmented Reality , Clinical Competence , Kidney/surgery , Ultrasonography, Interventional , Computer Simulation , Humans , Reproducibility of Results , Ultrasonography , User-Computer Interface
20.
J Cardiothorac Vasc Anesth ; 34(4): 920-925, 2020 Apr.
Article in English | MEDLINE | ID: mdl-31563461

ABSTRACT

OBJECTIVE: To investigate the effects of different positioning on the volume/location of the internal jugular vein (IJV) using 2-dimensional (2D) tracked ultrasound. DESIGN: This was a prospective, observational study. SETTING: Local research institute. PARTICIPANTS: Healthy volunteers. INTERVENTIONS: Twenty healthy volunteers were scanned in the following 6 positions: (1) supine with head neutral, rotated 15 and 30 degrees to the left and (2) 5-, 10-, and 15-degree Trendelenburg position with head neutral. In each position the volunteer's neck was scanned using a 2D ultrasound probe tracked with a magnetic tracker. These spatially tracked 2D images were collected and reconstructed into a 3D volume of the IJV and carotid artery. This 3D ultrasound volume then was segmented to obtain a 3D surface on which measurements and calculations were performed. MEASUREMENTS AND MAIN RESULTS: The measurements included average cross-section area (CSA), CSA along the length of IJV, and average overlap rate. CSA (mm2) in the supine and 5-, 10-, and 15-degree Trendelenburg positions were as follows: 86.7 ± 44.8, 104.3 ± 54.5, 119.1 ± 58.6, and 133.7 ± 53.3 (p < 0.0001). CSA enlarged with the increase of Trendelenburg degree. Neither Trendelenburg position nor head rotation showed a correlation with overlap rate. CONCLUSIONS: Trendelenburg position significantly increased the CSA of the IJV, thus facilitating IJV cannulation. This new 3D reconstruction method permits the creation of a 3D volume through a tracked 2D ultrasound scanning system with image acquisition and integration and may prove useful in providing the user with a "road map" of the vascular anatomy of a patient's neck or other anatomic structures.


Subject(s)
Catheterization, Central Venous , Jugular Veins , Head-Down Tilt , Humans , Jugular Veins/diagnostic imaging , Prospective Studies , Ultrasonography
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