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1.
Article in English | MEDLINE | ID: mdl-34214028

ABSTRACT

Sporobolomyces lactosus is a pink yeast-like fungus that is not congeneric with other members of Sporobolomyces (Basidiomycota, Microbotryomycetes, Sporidiobolales). During our ongoing studies of pink yeasts we determined that S. lactosus was most closely related to Pseudeurotium zonatum (Ascomycota, Leotiomycetes, Thelebolales). A molecular phylogenetic analysis using sequences of the ITS region and the small and large subunit (SSU, LSU) rRNA genes, indicated that four isolates of S. lactosus, including three ex-type isolates, were placed in Thelebolales with maximum support. A new genus is proposed to accommodate S. lactosus, Inopinatum. This is the first pink yeast reported in Leotiomycetes.


Subject(s)
Basidiomycota/classification , Phylogeny , Basidiomycota/isolation & purification , DNA, Fungal/genetics , Pigmentation , Poland , RNA, Ribosomal/genetics , Sequence Analysis, DNA
2.
Microbiol Res ; 220: 53-60, 2019 Mar.
Article in English | MEDLINE | ID: mdl-30744819

ABSTRACT

Sweat is a secretory fluid that can be a source of unpleasant body odour due to interaction of resident bacteria with sweat components. Identification of glycoproteins in sweat suggests that protein-conjugated glycans may act as binding epitopes for bacteria, as found in other secretory fluids such as human milk, tears and saliva which help to protect epithelial surfaces from infection. We conducted proteomic and glycomic analysis of sweat to reveal an abundance of glycoproteins, predominantly carrying bi-antennary sialylated N-glycans with or without fucose. A fluorescent plate assay was used to determine whether glycans on sweat proteins provide binding epitopes for odour-producing skin commensals Staphylococcus epidermidis and Corynebacterium. Sialic acid and fucose were found to be important binding epitopes for S. epidermidis 3-22-BD-6, a strain recently isolated from human sweat, whereas fucose (but not sialic acid) contributed to the binding of Type strain S. epidermidis ATCC 12228. In contrast, our results indicate that sweat N-glycans do not provide binding epitopes for Corynebacterium. Synthetic sugar mimics of Lewis blood group antigens were investigated as potential inhibitors of the binding of S. epidermidis 3-22-BD-6 to sweat. Pre-incubation of the bacterium with LeB, LeX, LeY and sLeX (pentaose) resulted in a significant reduction in sweat protein adhesion indicating that terminal fucose is a key binding epitope, particularly when linked to a Type 2 chain (Galß1-4GlcNAc) configuration (LeY). Our results form an impetus for future studies seeking to elucidate the role of glycans in sweat associated malodour, with possible implications for cosmetic and medical fields.


Subject(s)
Corynebacterium/metabolism , Polysaccharides/metabolism , Staphylococcus epidermidis/metabolism , Sweat/chemistry , Sweat/microbiology , Adult , Bacterial Adhesion/drug effects , Bacterial Adhesion/physiology , Epitopes , Fucose/metabolism , Glycoproteins/metabolism , Humans , Male , Middle Aged , N-Acetylneuraminic Acid/metabolism , Polysaccharides/pharmacology , Proteomics , Skin/microbiology , Young Adult
3.
Methods Mol Biol ; 1558: 139-158, 2017.
Article in English | MEDLINE | ID: mdl-28150237

ABSTRACT

UniCarbKB ( http://unicarbkb.org ) is a comprehensive resource for mammalian glycoprotein and annotation data. In particular, the database provides information on the oligosaccharides characterized from a glycoprotein at either the global or site-specific level. This evidence is accumulated from a peer-reviewed and manually curated collection of information on oligosaccharides derived from membrane and secreted glycoproteins purified from biological fluids and/or tissues. This information is further supplemented with experimental method descriptions that summarize important sample preparation and analytical strategies. A new release of UniCarbKB is published every three months, each includes a collection of curated data and improvements to database functionality. In this Chapter, we outline the objectives of UniCarbKB, and describe a selection of step-by-step workflows for navigating the information available. We also provide a short description of web services available and future plans for improving data access. The information presented in this Chapter supplements content available in our knowledgebase including regular updates on interface improvements, new features, and revisions to the database content ( http://confluence.unicarbkb.org ).


Subject(s)
Computational Biology/methods , Databases, Protein , Glycomics/methods , Glycoproteins , Proteome , Proteomics/methods , Animals , Humans , Search Engine , Software , User-Computer Interface , Web Browser
4.
Glycobiology ; 26(3): 218-29, 2016 Mar.
Article in English | MEDLINE | ID: mdl-26582610

ABSTRACT

There is increasing evidence that secretory fluids such as tears, saliva and milk play an important role in protecting the human body from infection via a washing mechanism involving glycan-mediated adhesion of potential pathogens to secretory glycoproteins. Interaction of sweat with bacteria is well established as the cause of sweat-associated malodor. However, the role of sweat glycoproteins in microbial attachment has received little, if any, research interest in the past. In this review, we demonstrate how recent published studies involving high-throughput proteomic analysis have inadvertently, and fortuitously, exposed an abundance of glycoproteins in sweat, many of which have also been identified in other secretory fluids. We bring together research demonstrating microbial adhesion to these secretory glycoproteins in tears, saliva and milk and suggest a similar role of the sweat glycoproteins in mediating microbial attachment to sweat and/or skin. The contribution of glycan-mediated microbial adhesion to sweat glycoproteins, and the associated impact on sweat derived malodor and pathogenic skin infections are unchartered new research areas that we are beginning to explore.


Subject(s)
Glycoproteins/biosynthesis , Odorants , Sweat/metabolism , Sweating/genetics , Bacteria/metabolism , Bacteria/pathogenicity , Bacterial Adhesion/genetics , Glycoproteins/genetics , Humans , Infections/genetics , Infections/microbiology , Polysaccharides/genetics , Polysaccharides/metabolism , Sweat/microbiology
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