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1.
Nucl Med Biol ; 43(5): 273-9, 2016 May.
Article in English | MEDLINE | ID: mdl-27150029

ABSTRACT

INTRODUCTION: Fialuridine (FIAU) is a nucleoside analog that is a substrate for bacterial thymidine kinase (TK). Once phosphorylated by TK, [(124)I]FIAU becomes trapped within bacteria and can be detected with positron emission tomography/computed tomography (PET/CT). [(124)I]FIAU PET/CT has been shown to detect bacteria in patients with musculoskeletal bacterial infections. Accurate diagnosis of prosthetic joint infections (PJIs) has proven challenging because of the lack of a well-validated reference. In the current study, we assessed biodistribution and dosimetry of [(124)I]FIAU, and investigated whether [(124)I]FIAU PET/CT can diagnose PJIs with acceptable accuracy. METHODS: To assess biodistribution and dosimetry, six subjects with suspected hip or knee PJI and six healthy subjects underwent serial PET/CT after being dosed with 74MBq (2mCi) [(124)I]FIAU intravenously (IV). Estimated radiation doses were calculated with the OLINDA/EXM software. To determine accuracy of [(124)I]FIAU, 22 subjects with suspected hip or knee PJI were scanned at 2-6 and 24-30h post IV injection of 185MBq (5mCi) [(124)I]FIAU. Images were interpreted by a single reader blinded to clinical information. Representative cases were reviewed by 3 additional readers. The utility of [(124)I]FIAU to detect PJIs was assessed based on the correlation of the patient's infection status with imaging results as determined by an independent adjudication board (IAB). RESULTS: The kidney, liver, spleen, and urinary bladder received the highest radiation doses of [(124)I]FIAU. The effective dose was 0.16 to 0.20mSv/MBq and doses to most organs ranged from 0.11 to 0.76mGy/MBq. PET image quality obtained from PJI patients was confounded by metal artifacts from the prostheses and pronounced FIAU uptake in muscle. Consequently, a correlation with infection status and imaging results could not be established. CONCLUSIONS: [(124)I]FIAU was well-tolerated in healthy volunteers and subjects with suspected PJI, and had acceptable dosimetry. However, the utility of [(124)I]FIAU for the clinical detection of PJIs is limited by poor image quality and low specificity.


Subject(s)
Arabinofuranosyluracil/analogs & derivatives , Joint Diseases/diagnostic imaging , Positron Emission Tomography Computed Tomography/methods , Prosthesis-Related Infections/diagnostic imaging , Adult , Arabinofuranosyluracil/adverse effects , Arabinofuranosyluracil/pharmacokinetics , Female , Humans , Joint Diseases/metabolism , Male , Positron Emission Tomography Computed Tomography/adverse effects , Prosthesis-Related Infections/metabolism , Radiometry , Safety , Tissue Distribution
2.
Clin Pharmacol Drug Dev ; 4(2): 130-136, 2015 Mar.
Article in English | MEDLINE | ID: mdl-26097793

ABSTRACT

Vestipitant is a potent and selective neurokinin 1 (NK-1) receptor antagonist that was investigated as a potential treatment for post-operative nausea and vomiting (PONV). A previous mannitol-based formulation of vestipitant was associated with hemolytic activity in preclinical studies. In an effort to reduce the hemolytic potential and develop an IV formulation of vestipitant that could be administered more rapidly, an IV formulation containing sulfobutylether-7-beta-cyclodextrin (SBE7-ß-CD, Captisol™) was developed and tested in a phase 1 clinical study. This was a randomized, single-blind (subjects and investigator-blinded, sponsor-unblinded), placebo controlled, dose escalation study in healthy subjects in which 7 cohorts of 8 subjects per cohort received SBE7-ß-CD -based vestipitant (2 mg/mL) or placebo (saline) in a 3:1 ratio (active:placebo) at different doses and infusion rates. The results demonstrated the ability to infuse up to 48 mg vestipitant in a 2 mg/mL formulation over 30 seconds with no evidence of hemolytic effects. Cohorts of subjects at lower doses and longer infusion duration (>1 minute) reported more AEs related to the infusion site than those at the higher doses and faster infusion rates.

3.
Biochemistry ; 44(1): 253-60, 2005 Jan 11.
Article in English | MEDLINE | ID: mdl-15628866

ABSTRACT

Polypeptide deformylase (PDF) is an essential bacterial metalloenzyme responsible for the removal of the N-formyl group from the N-terminal methionine of nascent polypeptides. Inhibition of bacterial PDF enzymes by actinonin, a naturally occurring antibacterial agent, has been characterized using steady-state and transient kinetic methods. Slow binding of actinonin to these enzymes is observed under steady-state conditions. Progress curve analysis is consistent with a two-step binding mechanism, in which tightening of the initial encounter complex (EI) results in a final complex (EI*) with an extremely slow, but observable, off-rate (t(1/2) for inhibitor dissociation >or=0.77 days). Stopped-flow measurement of PDF fluorescence confirms formation of EI and provides a direct measurement of the association rate. Rapid dilution studies establish that the potency of actinonin is enhanced by more than 2000-fold upon tightening of EI to form EI*, from K(i) = 530 nM (EI) to Ki*

Subject(s)
Amidohydrolases/antagonists & inhibitors , Hydroxamic Acids/pharmacology , Amidohydrolases/chemistry , Anti-Bacterial Agents/pharmacology , Hydroxamic Acids/chemistry , Kinetics , Protein Binding , Staphylococcus aureus/enzymology
4.
J Bacteriol ; 186(8): 2346-54, 2004 Apr.
Article in English | MEDLINE | ID: mdl-15060037

ABSTRACT

Down-regulation of expression of trmD, encoding the enzyme tRNA (guanosine-1)-methyltransferase, has shown that this gene is essential for growth of Streptococcus pneumoniae. The S. pneumoniae trmD gene has been isolated and expressed in Escherichia coli by using a His-tagged T7 expression vector. Recombinant protein has been purified, and its catalytic and physical properties have been characterized. The native enzyme displays a molecular mass of approximately 65,000 Da, suggesting that streptococcal TrmD is a dimer of two identical subunits. In fact, this characteristic can be extended to several other TrmD orthologs, including E. coli TrmD. Kinetic studies show that the streptococcal enzyme utilizes a sequential mechanism. Binding of tRNA by gel mobility shift assays gives a dissociation constant of 22 nM for one of its substrates, tRNA(Leu)(CAG). Other heterologous nonsubstrate tRNA species, like, tRNA (Thr)(GGT), tRNA(Phe), and tRNA (Ala)(TGC), bind the enzyme with similar affinities, suggesting that tRNA specificity is achieved via a postbinding event(s).


Subject(s)
Streptococcus pneumoniae/enzymology , tRNA Methyltransferases/metabolism , Amino Acid Sequence , Cloning, Molecular , Escherichia coli/metabolism , Kinetics , Molecular Sequence Data , Molecular Weight , Operon , RNA, Transfer/chemical synthesis , RNA, Transfer/metabolism , Recombinant Proteins/metabolism , Sequence Alignment , Streptococcus pneumoniae/growth & development , tRNA Methyltransferases/chemistry , tRNA Methyltransferases/genetics
5.
Protein Expr Purif ; 30(2): 203-9, 2003 Aug.
Article in English | MEDLINE | ID: mdl-12880769

ABSTRACT

YihA has previously been characterized as an essential gene of unknown function in both Escherichia coli and Bacillus subtilis. It is conserved in bacteria and represents an attractive target for the discovery of new antibiotics. YihA encodes a putative GTP-binding protein. We have cloned and overexpressed the gene encoding E. coli YihA and initiated biochemical studies as a first step towards understanding its biological function. We showed by circular dichroism that the purified protein has a secondary structure typical of most GTP-binding proteins. It binds guanine nucleotides specifically, as demonstrated by fluorescence resonance energy transfer between 2'-(or-3')-O-(N-methylanthraniloyl) nucleotides (mant-nucleotides) and the tryptophans of YihA. The K(d) values for GDP and GTP were determined by competition with 2'-(or-3')-O-(N-methylanthraniloyl) GDP to be 3 and 27 microM, respectively. Using mutants of YihA we show that nucleotide binding occurs at the putative GTP-binding domain predicted from the primary sequence.


Subject(s)
Escherichia coli Proteins/isolation & purification , Escherichia coli Proteins/metabolism , Escherichia coli , GTP-Binding Proteins/isolation & purification , GTP-Binding Proteins/metabolism , Amino Acid Sequence , Circular Dichroism , Cloning, Molecular , Escherichia coli/chemistry , Escherichia coli/genetics , Escherichia coli Proteins/chemistry , Escherichia coli Proteins/genetics , GTP-Binding Proteins/chemistry , GTP-Binding Proteins/genetics , Guanosine Diphosphate/metabolism , Guanosine Triphosphate/metabolism , Hot Temperature , Molecular Sequence Data , Mutagenesis, Site-Directed , Protein Denaturation , Sequence Alignment
6.
Protein Sci ; 12(2): 349-60, 2003 Feb.
Article in English | MEDLINE | ID: mdl-12538898

ABSTRACT

Polypeptide deformylase (PDF) catalyzes the deformylation of polypeptide chains in bacteria. It is essential for bacterial cell viability and is a potential antibacterial drug target. Here, we report the crystal structures of polypeptide deformylase from four different species of bacteria: Streptococcus pneumoniae, Staphylococcus aureus, Haemophilus influenzae, and Escherichia coli. Comparison of these four structures reveals significant overall differences between the two Gram-negative species (E. coli and H. influenzae) and the two Gram-positive species (S. pneumoniae and S. aureus). Despite these differences and low overall sequence identity, the S1' pocket of PDF is well conserved among the four enzymes studied. We also describe the binding of nonpeptidic inhibitor molecules SB-485345, SB-543668, and SB-505684 to both S. pneumoniae and E. coli PDF. Comparison of these structures shows similar binding interactions with both Gram-negative and Gram-positive species. Understanding the similarities and subtle differences in active site structure between species will help to design broad-spectrum polypeptide deformylase inhibitor molecules.


Subject(s)
Amidohydrolases , Aminopeptidases/antagonists & inhibitors , Aminopeptidases/chemistry , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Enzyme Inhibitors/metabolism , Amino Acid Sequence , Aminopeptidases/metabolism , Bacterial Proteins/antagonists & inhibitors , Binding Sites , Crystallography, X-Ray , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Escherichia coli/drug effects , Escherichia coli/enzymology , Haemophilus influenzae/drug effects , Haemophilus influenzae/enzymology , Kinetics , Microbial Sensitivity Tests , Models, Molecular , Molecular Sequence Data , Peptides , Protein Binding , Protein Conformation , Sequence Homology, Amino Acid , Staphylococcus aureus/drug effects , Staphylococcus aureus/enzymology , Streptococcus pneumoniae/drug effects , Streptococcus pneumoniae/enzymology
7.
Biochem J ; 363(Pt 3): 825-31, 2002 May 01.
Article in English | MEDLINE | ID: mdl-11964185

ABSTRACT

Thymidylate kinase (TMK) catalyses the phosphorylation of dTMP to form dTDP in both the de novo and salvage pathways of dTTP synthesis. The tmk gene from the bacterial pathogen Streptococcus pneumoniae was identified. The gene, encoding a 212-amino-acid polypeptide (23352 Da), was cloned and overexpressed in Escherichia coli with an N-terminal hexahistidine tag. The enzyme was purified to homogeneity, and characterized in the forward reaction. The pH profile of TMK indicates that its activity is optimal at pH 8.5. The substrate specificity of the enzyme was examined; it was found that not only ATP, but also dATP and to a lesser extent CTP, could act as phosphate donors, and dTMP and dUMP could serve as phosphate acceptors. Furthermore, AZT-MP (3'-azido-3'-deoxythymidine 5'-monophosphate) was shown not to be a substrate for S. pneumoniae TMK. Steady-state kinetics and inhibition studies with adenosine 5'-[beta-thio]diphosphate and dTDP in addition to isothermal titration calorimetry were performed. The data showed that binding follows an ordered pathway, in which ATP binds first with a K(m) of 235 +/- 46 microM and a K(d) of 116 +/- 3 microM, and dTMP binds secondly with a K(m) of 66 +/- 12 microM and a K(d) of 53 +/- 2 microM.


Subject(s)
Nucleoside-Phosphate Kinase/metabolism , Streptococcus pneumoniae/enzymology , Adenosine Triphosphate/metabolism , Amino Acid Sequence , Calorimetry , Cytidine Triphosphate/metabolism , Deoxyuracil Nucleotides/metabolism , Escherichia coli , Hydrogen-Ion Concentration , Molecular Sequence Data , Molecular Weight , Phosphorylation , Substrate Specificity , Thymine Nucleotides/metabolism
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