Inorganic phosphorous availability and mobility in a manufactured soil.

Manufactured soils, created by combining various organic and inorganic waste materials and byproducts, may be tailored to specific applications, providing an alternative to the extraction of natural soils. It is important for them to be capable of supporting plant growth without the need for significant management or fertiliser applications, the over-application of which can have adverse environmental effects. We examined the dynamics of phosphorus (P) transformations within a manufactured soil and the implications for nutrient cycling. A freshly prepared manufactured soil (32.5 % composted green waste, 32.5 % composted bark, 25 % horticultural grit, and 10 % lignite clay) was studied over one year in temperature and moisture controlled mesocosms. Leachate was collected to achieve high-resolution monitoring of leached phosphate concentrations. Initially, leached dissolved inorganic phosphorus (DIP) concentrations were low (0.02 ± 0.01 mg P L-1), before increasing by 160 µg P L-1 d-1 over the first 42 days to 5.57 ± 1.23 mg P L-1. After reaching a maximum concentration, DIP concentrations remained relatively consistent, varying by only 1.67 mg P L-1 until day 270. The increase in leached DIP was likely driven by soil organic matter mineralisation and the cleavage of carbon­phosphorus bonds by the soil microbes to satisfy carbon demand with mineralogical influences, such as a decrease in apatite content, also contributing. Sorption and desorption from soil particles were the processes behind the P loss from the soil, which was followed by slow diffusion and eventual loss via leaching. The fertiliser application on phosphate dynamics resulted in increased DIP leaching. P concentrations observed in the manufactured soil were within the range considered sufficient to support plant growth. However, the mean leached phosphorus concentrations were higher than reported eutrophication thresholds suggesting that these soils may pose a risk to surface waters in their current form.

Nucleated red blood cells as a biomarker for mortality in infants and neonates requiring veno-arterial extracorporeal membrane oxygenation for cardiac disease.

INTRODUCTION: Nucleated red blood cells (NRBC) are rare in the peripheral circulation of healthy individuals and their presence have been associated with mortality in adults and very low birth weight newborns, however, its value as a biomarker for mortality in infants requiring veno-arterial (VA) extracorporeal membrane oxygenation (ECMO) has yet to be studied. We sought to determine if NRBC can serve as a biomarker for ECMO mortality and inpatient mortality in infants requiring V-A ECMO. METHODS: A single-center retrospective chart review analyzing infants <1 year of age requiring VA ECMO due to myocardial dysfunction or post-cardiotomy between January 1, 2011 to June 30, 2020. RESULTS: One hundred two patients required VA ECMO. Sixty-five patients required ECMO post-cardiotomy, 19 for perioperative deterioration, and 18 for myocardial dysfunction. Fifty-one patients (50%) died (21 died on ECMO, 30 died post-ECMO decannulation). Multivariable analysis found Age <60 days (OR 13.0, 95% CI 1.9-89.6, p = 0.009), NRBC increase by >50% post-ECMO decannulation (OR 17.1, 95% CI 3.1-95.1, p = 0.001), Single Ventricle (OR 9.0, 95% CI 1.7-47.7, p = 0.01), and lactate at ECMO decannulation (OR 3.0, 95% CI 1.3-7.1, p = 0.011) to be independently associated with inpatient mortality. ROC curves evaluating NRBC pre-ECMO decannulation as a biomarker for mortality on ECMO (AUC 0.80, 95% CI 0.68-0.92, p ⩽ 0.001) and post-ECMO decannulation (AUC 0.75, 95% CI 0.65-0.84, p ⩽ 0.001) show NRBC to be an accurate biomarker for mortality. CONCLUSIONS: Greater than 50% increase in NRBC post-ECMO decannulation is associated with inpatient mortality. NRBC value pre-ECMO decannulation may be a useful biomarker for mortality while on ECMO and post-decannulation.

Occlusive Pulmonary Artery Thrombosis in a Healthy Neonate With No Identifiable Risk Factors.

Pulmonary artery thrombosis is reported in neonates with risk factors for hypercoagulability. No consensus exists regarding standard therapy for this condition. We present a neonate, with no risk factors for thrombosis, who was admitted after birth to the Pediatric Cardiac Intensive Care Unit with an occlusive left pulmonary artery thrombus. (Level of Difficulty: Intermediate.).

Biochar incorporation increased nitrogen and carbon retention in a waste-derived soil.

The synthesis of manufactured soils converts waste materials to value-added products, alleviating pressures on both waste disposal infrastructure and topsoils. For manufactured soils to be effective media for plant growth, they must retain and store plant-available nutrients, including nitrogen. In this study, biochar applications were tested for their ability to retain nitrogen in a soil manufactured from waste materials. A biochar, produced from horticultural green waste, was added to a manufactured soil at 2, 5 and 10 % (by weight), then maintained at 15 °C and irrigated with water (0.84 mL m-2 d-1) over 6 weeks. Total dissolved nitrogen concentrations in soil leachate decreased by 25.2, 30.6 and 44.0 % at biochar concentrations of 2, 5 and 10 %, respectively. Biochar also changed the proportions of each nitrogen-fraction in collected samples. Three mechanisms for biochar-induced nitrogen retention were possible: i) increased cation and anion exchange capacity of the substrate; ii) retention of molecules within the biochar pore spaces; iii) immobilisation of nitrogen through microbial utilisation of labile carbon further supported by increased soil moisture content, surface area, and pH. Dissolved organic carbon concentrations in leachate were reduced (-34.7 %, -28.9 %, and -16.7 %) in the substrate with 2, 5 and 10 % biochar additions, respectively. Fluorescein diacetate hydrolysis data showed increased microbial metabolic activity with biochar application (14.7 ±â€¯0.5, 25.4 ±â€¯5.3, 27.0 ±â€¯0.1, 46.1 ±â€¯6.1 µg FL g-1 h-1 for applications at 0, 2, 5, and 10 %, respectively), linking biochar addition to enhanced microbial activity. These data highlight the potential for biochar to suppress the long-term turnover of SOM and promote carbon sequestration, and a long-term sustainable growth substrate provided by the reuse of waste materials diverted from landfill.

Differences in microbial activity and microbial populations of peat associated with suppression of damping-off disease caused by Pythium sylvaticum.

The microbiological characteristics associated with disease-suppressive peats are unclear. We used a bioassay for Pythium sylvaticum-induced damping-off of cress seedlings to identify conducive and suppressive peats. Microbial activity in unconditioned peats was negatively correlated with the counts of P. sylvaticum at the end of the bioassay. Denaturing gradient gel electrophoresis (DGGE) profiling and clone library analyses of small-subunit rRNA gene sequences from two suppressive and two conducive peats differed in the bacterial profiles generated and the diversity of sequence populations. There were also significant differences between bacterial sequence populations from suppressive and conducive peats. The frequencies of a number of microbial groups, including the Rhizobium-Agrobacterium group (specifically sequences similar to those for the genera Ochrobactrum and Zoogloea) and the Acidobacteria, increased specifically in the suppressive peats, although no single bacterial group was associated with disease suppression. Fungal DGGE profiles varied little over the course of the bioassay; however, two bands associated specifically with suppressive samples were detected. Sequences from these bands corresponded to Basidiomycete yeast genera. Although the DGGE profiles were similar, fungal sequence diversity also increased during the bioassay. Sequences highly similar to those of Cryptococcus increased in relative abundance during the bioassay, particularly in the suppressive samples. This study highlights the importance of using complementary approaches to molecular profiling of complex populations and provides the first report that basidiomycetous yeasts may be associated with the suppression of Pythium-induced diseases in peats.

Spatial and temporal analysis of the microbial community in slow sand filters used for treating horticultural irrigation water.

An experimental slow sand filter (SSF) was constructed to study the spatial and temporal structure of a bacterial community suppressive to an oomycete plant pathogen, Phytophthora cryptogea. Passage of water through the mature sand column resulted in complete removal of zoospores of the plant pathogen. To monitor global changes in the microbial community, bacterial and fungal numbers were estimated on selective media, direct viable counts of fungal spores were made, and the ATP content was measured. PCR amplification of 16S rRNA genes and denaturing gradient gel electrophoresis (DGGE) were used to study the dynamics of the bacterial community in detail. The top layer (1 cm) of the SSF column was dominated by a variable and active microbial population, whereas the middle (50 cm) and bottom (80 cm) layers were dominated by less active and diverse bacterial populations. The major changes in the microbial populations occurred during the first week of filter operation, and these populations then remained to the end of the study. Spatial and temporal nonlinear mapping of the DGGE bands provided a useful visual representation of the similarities between SSF samples. According to the DGGE profile, less than 2% of the dominating bands present in the SSF column were represented in the culturable population. Sequence analysis of DGGE bands from all depths of the SSF column indicated that a range of bacteria were present, with 16S rRNA gene sequences similar to groups such as Bacillus megaterium, Cytophaga, Desulfovibrio, Legionella, Rhodococcus rhodochrous, Sphingomonas, and an uncharacterized environmental clone. This study describes the characterization of the performance, and microbial composition, of SSFs used for the treatment of water for use in the horticultural industry. Utilization of naturally suppressive population of microorganisms either directly or by manipulation of the environment in an SSF may provide a more reproducible control method for the future.

Molecular characterization of Legionella populations present within slow sand filters used for fungal plant pathogen suppression in horticultural crops.

The total bacterial community of an experimental slow sand filter (SSF) was analyzed by denaturing gradient gel electrophoresis (DGGE) of partial 16S rRNA gene PCR products. One dominant band had sequence homology to Legionella species, indicating that these bacteria were a large component of the SSF bacterial community. Populations within experimental and commercial SSF units were studied by using Legionella-specific PCR primers, and products were studied by DGGE and quantitative PCR analyses. In the experimental SSF unit, the DGGE profiles for sand column, reservoir, storage tank, and headwater tank samples each contained at least one intense band, indicating that a single Legionella strain was predominant in each sample. Greater numbers of DGGE bands of equal intensity were detected in the outflow water sample. Sequence analysis of these PCR products showed that several Legionella species were present and that the organisms exhibited similarity to strains isolated from environmental and clinical samples. Quantitative PCR analysis of the SSF samples showed that from the headwater sample through the sand column, the number of Legionella cells decreased, resulting in a lower number of cells in the outflow water. In the commercial SSF, legionellae were also detected in the sand column samples. Storing prefilter water or locating SSF units within greenhouses, which are often maintained at temperatures that are higher than the ambient temperature, increases the risk of growth of Legionella and should be avoided. Care should also be taken when used filter sand is handled or replaced, and regular monitoring of outflow water would be useful, especially if the water is used for misting or overhead irrigation.