Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 33
Filter
Add more filters










Publication year range
1.
Microbiol Resour Announc ; 11(1): e0086821, 2022 Jan 20.
Article in English | MEDLINE | ID: mdl-35049349

ABSTRACT

Here, we report an essentially complete genome assembly for the Ty1-less Saccharomyces paradoxus strain DG1768 (derivative of strain 337) based on PacBio and Illumina shotgun sequence data. We also document the genetic alterations that make this yeast strain a key resource for Ty1 mobility studies.

2.
Mol Biol Cell ; 28(5): 645-660, 2017 Mar 01.
Article in English | MEDLINE | ID: mdl-28077618

ABSTRACT

Multinucleated cells are important in many organisms, but the mechanisms governing the movements of nuclei sharing a common cytoplasm are not understood. In the hyphae of the plant pathogenic fungus Ashbya gossypii, nuclei move back and forth, occasionally bypassing each other, preventing the formation of nuclear clusters. This is essential for genetic stability. These movements depend on cytoplasmic microtubules emanating from the nuclei that are pulled by dynein motors anchored at the cortex. Using three-dimensional stochastic simulations with parameters constrained by the literature, we predict the cortical anchor density from the characteristics of nuclear movements. The model accounts for the complex nuclear movements seen in vivo, using a minimal set of experimentally determined ingredients. Of interest, these ingredients power the oscillations of the anaphase spindle in budding yeast, but in A. gossypii, this system is not restricted to a specific nuclear cycle stage, possibly as a result of adaptation to hyphal growth and multinuclearity.


Subject(s)
Cell Nucleus/physiology , Eremothecium/physiology , Microtubules/physiology , Actins/metabolism , Anaphase/physiology , Cell Nucleus/metabolism , Computer Simulation , Cytoplasm/metabolism , Dyneins/metabolism , Eremothecium/cytology , Eremothecium/metabolism , Giant Cells/metabolism , Giant Cells/physiology , Hyphae/metabolism , Microtubule-Associated Proteins/metabolism , Microtubules/metabolism , Saccharomyces cerevisiae/cytology , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae/physiology , Spindle Apparatus/metabolism , Spindle Apparatus/physiology
3.
Eukaryot Cell ; 12(11): 1423-32, 2013 Nov.
Article in English | MEDLINE | ID: mdl-23771903

ABSTRACT

Ashbya gossypii grows as multinucleated and constantly elongating hyphae. Nuclei are in continuous forward and backward motion, also move during mitosis, and frequently bypass each other. Whereas these nuclear movements are well documented, comparatively little is known about the density and morphology of organelles which very likely influence these movements. To understand the three-dimensional subcellular organization of hyphae at high resolution, we performed large-scale electron tomography of the tip regions in A. gossypii. Here, we present a comprehensive space-filling model in which most membrane-limited organelles including nuclei, mitochondria, endosomes, multivesicular bodies, vacuoles, autophagosomes, peroxisomes, and vesicles are modeled. Nuclei revealed different morphologies and protrusions filled by the nucleolus. Mitochondria are very abundant and form a tubular network with a polarized spherical fraction. The organelles of the degradative pathways show a clustered organization. By analyzing vesicle-like bodies, we identified three size classes of electron-dense vesicles (∼200, ∼150, and ∼100 nm) homogeneously distributed in the cytoplasm which most likely represent peroxisomes. Finally, coated and uncoated vesicles with approximately 40-nm diameters show a polarized distribution toward the hyphal tip with the coated vesicles preferentially localizing at the hyphal periphery.


Subject(s)
Ascomycota/ultrastructure , Hyphae/ultrastructure , Tomography, X-Ray Computed , Cell Nucleus/diagnostic imaging , Cell Nucleus/ultrastructure , Cytoplasmic Vesicles/diagnostic imaging , Cytoplasmic Vesicles/ultrastructure , Mitochondria/diagnostic imaging , Mitochondria/ultrastructure , Peroxisomes/diagnostic imaging , Peroxisomes/ultrastructure
4.
G3 (Bethesda) ; 3(8): 1225-39, 2013 Aug 07.
Article in English | MEDLINE | ID: mdl-23749448

ABSTRACT

The filamentous fungus Ashbya gossypii is a cotton pathogen transmitted by insects. It is readily grown and manipulated in the laboratory and is commercially exploited as a natural overproducer of vitamin B2. Our previous genome analysis of A. gossypii isolate ATCC10895, collected in Trinidad nearly 100 years ago, revealed extensive synteny with the Saccharomyces cerevisiae genome, leading us to use it as a model organism to understand the evolution of filamentous growth. To further develop Ashbya as a model system, we have investigated the ecological niche of A. gossypii and isolated additional strains and a sibling species, both useful in comparative analysis. We isolated fungi morphologically similar to A. gossypii from different plant-feeding insects of the suborder Heteroptera, generated a phylogenetic tree based on rDNA-ITS sequences, and performed high coverage short read sequencing with one A. gossypii isolate from Florida, a new species, Ashbya aceri, isolated in North Carolina, and a genetically marked derivative of ATCC10895 intensively used for functional studies. In contrast to S. cerevisiae, all strains carry four not three mating type loci, adding a new puzzle in the evolution of Ashbya species. Another surprise was the genome identity of 99.9% between the Florida strain and ATCC10895, isolated in Trinidad. The A. aceri and A. gossypii genomes show conserved gene orders rearranged by eight translocations, 90% overall sequence identity, and fewer tandem duplications in the A. aceri genome. Both species lack transposable elements. Finally, our work identifies plant-feeding insects of the suborder Heteroptera as the most likely natural reservoir of Ashbya, and that infection of cotton and other plants may be incidental to the growth of the fungus in its insect host.


Subject(s)
Eremothecium/genetics , Insecta/microbiology , Animals , Base Sequence , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Eremothecium/classification , Eremothecium/isolation & purification , Genes, Mating Type, Fungal/genetics , Genome, Fungal , Heteroptera/classification , Heteroptera/genetics , Introns , Molecular Sequence Data , Open Reading Frames/genetics , Sequence Analysis, DNA , Sequence Homology
5.
J Cell Sci ; 125(Pt 23): 5830-9, 2012 Dec 01.
Article in English | MEDLINE | ID: mdl-23015595

ABSTRACT

We report the mechanistic basis guiding the migration pattern of multiple nuclei in hyphae of Ashbya gossypii. Using electron tomography, we reconstructed the cytoplasmic microtubule (cMT) cytoskeleton in three tip regions with a total of 13 nuclei and also the spindle microtubules of four mitotic nuclei. Each spindle pole body (SPB) nucleates three cMTs and most cMTs above a certain length grow according to their plus-end structure. Long cMTs closely align for several microns along the cortex, presumably marking regions where dynein generates pulling forces on nuclei. Close proximity between cMTs emanating from adjacent nuclei was not observed. The majority of nuclei carry duplicated side-by-side SPBs, which together emanate an average of six cMTs, in most cases in opposite orientation with respect to the hyphal growth axis. Such cMT arrays explain why many nuclei undergo short-range back and forth movements. Only occasionally do all six cMTs orient in one direction, a precondition for long-range nuclear bypassing. Following mitosis, daughter nuclei carry a single SPB with three cMTs. The increased probability that all three cMTs orient in one direction explains the high rate of nuclear bypassing observed in these nuclei. The A. gossypii mitotic spindle was found to be structurally similar to that of Saccharomyces cerevisiae in terms of nuclear microtubule (nMT) number, length distribution and three-dimensional organization even though the two organisms differ significantly in chromosome number. Our results suggest that two nMTs attach to each kinetochore in A. gossypii and not only one nMT like in S. cerevisiae.


Subject(s)
Cytoskeleton/metabolism , Electron Microscope Tomography/methods , Eremothecium/metabolism , Eremothecium/ultrastructure , Hyphae/metabolism , Microtubules/metabolism , Cytoskeleton/ultrastructure , Hyphae/ultrastructure , Microtubules/ultrastructure , Spindle Apparatus/metabolism , Spindle Apparatus/ultrastructure
6.
Mol Biol Cell ; 22(17): 3081-93, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21737675

ABSTRACT

In Saccharomyces cerevisiae, mitosis is coupled to cell division by the action of the Cdc fourteen early anaphase release (FEAR) and mitotic exit network (MEN) regulatory networks, which mediate exit from mitosis by activation of the phosphatase Cdc14. The closely related filamentous ascomycete Ashbya gossypii provides a unique cellular setting to study the evolution of these networks. Within its multinucleate hyphae, nuclei are free to divide without the spatial and temporal constraints described for budding yeast. To investigate how this highly conserved system has adapted to these circumstances, we constructed a series of mutants lacking homologues of core components of MEN and FEAR and monitored phenomena such as progression through mitosis and Cdc14 activation. MEN homologues in A. gossypii were shown to have diverged from their anticipated role in Cdc14 release and exit from mitosis. We observed defects in septation, as well as a partial metaphase arrest, in Agtem1Δ, Agcdc15Δ, Agdbf2/dbf20Δ, and Agmob1Δ. A. gossypii homologues of the FEAR network, on the other hand, have a conserved and more pronounced role in regulation of the M/G1 transition. Agcdc55Δ mutants are unable to sequester AgCdc14 throughout interphase. We propose a reduced model of the networks described in yeast, with a low degree of functional redundancy, convenient for further investigations into these networks.


Subject(s)
Eremothecium/genetics , Hyphae/genetics , Mitosis/genetics , Cell Cycle Proteins/genetics , Cell Cycle Proteins/metabolism , Chromosome Segregation , Eremothecium/cytology , Fungal Proteins/genetics , Fungal Proteins/metabolism , Gene Knockout Techniques , Green Fluorescent Proteins/metabolism , Hyphae/cytology , Phosphoprotein Phosphatases/genetics , Phosphoprotein Phosphatases/metabolism , Protein Transport , Recombinant Fusion Proteins/metabolism , Time-Lapse Imaging
7.
Fungal Biol ; 115(6): 557-68, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21640319

ABSTRACT

In the filamentous ascomycete Ashbya gossypii polarity establishment at sites of germ tube and lateral branch emergence depends on homologues of Saccharomyces cerevisiae factors controlling bud site selection and bud emergence. Maintenance of polar growth involves homologues of well-known polarity factors of budding yeast. To achieve the much higher rates of sustained polar surface expansion of hyphae compared to mainly non-polarly growing yeast buds five important alterations had to evolve. Permanent presence of the polarity machinery at a confined area in the rapidly expanding hyphal tip, increased cytoplasmic space with a much enlarged ER surface for generating secretory vesicles, efficient directed transport of secretory vesicles to and accumulation at the tip, increased capacity of the exocytosis system to process these vesicles, and an efficient endocytosis system for membrane and polarity factor recycling adjacent to the zone of exocytosis. Morphological, cell biological, and molecular aspects of this evolution are discussed based on experiments performed within the past 10 y.


Subject(s)
Biological Evolution , Hyphae/growth & development , Saccharomycetales/growth & development , Cell Polarity , Fungal Proteins/genetics , Fungal Proteins/metabolism , Hyphae/cytology , Hyphae/genetics , Hyphae/metabolism , Saccharomycetales/cytology , Saccharomycetales/genetics , Saccharomycetales/metabolism
8.
Eukaryot Cell ; 10(7): 902-15, 2011 Jul.
Article in English | MEDLINE | ID: mdl-21642510

ABSTRACT

During filamentous fungus development, multinucleated hyphae employ a system for long-range nuclear migration to maintain an equal nuclear density. A decade ago the microtubule motor dynein was shown to play a central role in this process. Previous studies with Ashbya gossypii revealed extensive bidirectional movements and bypassings of nuclei, an autonomous cytoplasmic microtubule (cMT) cytoskeleton emanating from each nucleus, and pulling of nuclei by sliding of cMTs along the cortex. Here, we show that dynein is the sole motor for bidirectional movements and bypassing because these movements are concomitantly decreased in mutants carrying truncations of the dynein heavy-chain DYN1 promoter. The dynactin component Jnm1, the accessory proteins Dyn2 and Ndl1, and the potential dynein cortical anchor Num1 are also involved in the dynamic distribution of nuclei. In their absence, nuclei aggregate to different degrees, whereby the mutants with dense nuclear clusters grow extremely long cMTs. As in budding yeast, we found that dynein is delivered to cMT plus ends, and its activity or processivity is probably controlled by dynactin and Num1. Together with its role in powering nuclear movements, we propose that dynein also plays (directly or indirectly) a role in the control of cMT length. Those combined dynein actions prevent nuclear clustering in A. gossypii and thus reveal a novel cellular role for dynein.


Subject(s)
Cell Nucleus/metabolism , Eremothecium/cytology , Eremothecium/metabolism , Hyphae/metabolism , Microtubules/metabolism , Cytoskeletal Proteins/genetics , Cytoskeleton/metabolism , Dynactin Complex , Dyneins/metabolism , Eremothecium/genetics , Gene Knockout Techniques , Hyphae/genetics , Microtubule Proteins/genetics , Microtubule-Associated Proteins , Movement , Nuclear Proteins/genetics
9.
J Cell Sci ; 124(Pt 10): 1629-34, 2011 May 15.
Article in English | MEDLINE | ID: mdl-21525038

ABSTRACT

One hallmark of the rapid expansion of the polar surface of fungal hyphae is the spatial separation of regions of exocytosis and endocytosis at hyphal tips, as recently shown for Ashbya gossypii and Aspergillus nidulans. To determine where cortex-associated eisosomes form with respect to these two regions, we monitored fluorescently marked eisosomes in A. gossypii. Each minute, 1.6 ± 0.5 eisosomes form within the first 30 µm of each hypha and are exclusively subapical of the endocytosis region. This spatial separation of the processes of eisosome formation and endocytosis, and the much lower frequency of eisosome formation compared with that of endocytic vesicle production do not support a recently proposed role for eisosomes in endocytosis. Levels of mRNA encoding eisosome components are tenfold higher in spores than in hyphae, explaining the observed higher eisosome density at the cortex of germ bubbles. As in Saccharomyces cerevisiae, eisosomes in A. gossypii are very stable. In contrast to S. cerevisiae, however, the A. gossypii homologue of Pil1, one of the main eisosome subunits, is very important for polar growth, whereas the homologue of Nce102, which colocalizes with eisosomes, is not needed for eisosome stability. By testing partial deletions of the A. gossypii homologue of Ymr086w, another component of the eisosome, we identified a novel protein domain essential for eisosome stability. We also compare our results with recent findings about eisosomes in A. nidulans.


Subject(s)
Fungal Proteins/metabolism , Saccharomycetales/metabolism , Cell Membrane/metabolism , Endocytosis , Fungal Proteins/chemistry , Fungal Proteins/isolation & purification , Genes, Fungal , Hyphae/chemistry , Hyphae/metabolism , Saccharomycetales/chemistry , Saccharomycetales/genetics , Spores, Fungal
10.
Mol Biol Cell ; 21(21): 3680-92, 2010 Nov 01.
Article in English | MEDLINE | ID: mdl-20844079

ABSTRACT

Ashbya gossypii has a budding yeast-like genome but grows exclusively as multinucleated hyphae. In contrast to budding yeast where positioning of nuclei at the bud neck is a major function of cytoplasmic microtubules (cMTs), A. gossypii nuclei are constantly in motion and positioning is not an issue. To investigate the role of cMTs in nuclear oscillation and bypassing, we constructed mutants potentially affecting cMT lengths. Hyphae lacking the plus (+)end marker Bik1 or the kinesin Kip2 cannot polymerize long cMTs and lose wild-type nuclear movements. Interestingly, hyphae lacking the kinesin Kip3 display longer cMTs concomitant with increased nuclear oscillation and bypassing. Polymerization and depolymerization rates of cMTs are 3 times higher in A. gossypii than in budding yeast and cMT catastrophes are rare. Growing cMTs slide along the hyphal cortex and exert pulling forces on nuclei. Surprisingly, a capture/shrinkage mechanism seems to be absent in A. gossypii. cMTs reaching a hyphal tip do not shrink, and cMT +ends accumulate in hyphal tips. Thus, differences in cMT dynamics and length control between budding yeast and A. gossypii are key elements in the adaptation of the cMT cytoskeleton to much longer cells and much higher degrees of nuclear mobilities.


Subject(s)
Cell Nucleus/physiology , Eremothecium/physiology , Microtubule-Associated Proteins/physiology , Microtubules/physiology , Animals , Arvicolinae , Carrier Proteins/metabolism , Cell Membrane/ultrastructure , Cell Nucleus/ultrastructure , Cytoplasm/metabolism , Cytoplasm/ultrastructure , Eremothecium/genetics , Eremothecium/metabolism , Eremothecium/ultrastructure , Hyphae/cytology , Hyphae/metabolism , Hyphae/ultrastructure , Microtubule-Associated Proteins/metabolism , Microtubules/metabolism , Microtubules/ultrastructure , Saccharomycetales/physiology
11.
Eukaryot Cell ; 9(8): 1216-24, 2010 Aug.
Article in English | MEDLINE | ID: mdl-20543061

ABSTRACT

In many fungal pathogens, infection is initiated by conidial germination. Subsequent stages involve germ tube elongation, conidiation, and vegetative hyphal fusion (anastomosis). Here, we used live-cell fluorescence to study the dynamics of green fluorescent protein (GFP)- and cherry fluorescent protein (ChFP)-labeled nuclei in the plant pathogen Fusarium oxysporum. Hyphae of F. oxysporum have uninucleated cells and exhibit an acropetal nuclear pedigree, where only the nucleus in the apical compartment is mitotically active. In contrast, conidiation follows a basopetal pattern, whereby mononucleated microconidia are generated by repeated mitotic cycles of the subapical nucleus in the phialide, followed by septation and cell abscission. Vegetative hyphal fusion is preceded by directed growth of the fusion hypha toward the receptor hypha and followed by a series of postfusion nuclear events, including mitosis of the apical nucleus of the fusion hypha, migration of a daughter nucleus into the receptor hypha, and degradation of the resident nucleus. These previously unreported patterns of nuclear dynamics in F. oxysporum could be intimately related to its pathogenic lifestyle.


Subject(s)
Cell Nucleus/metabolism , Fusarium/cytology , Fusarium/physiology , Germination/physiology , Hyphae/cytology , Hyphae/physiology , Spores, Fungal/physiology , Cell Polarity , Fluorescent Dyes/metabolism , Fusarium/growth & development , Fusarium/ultrastructure , Green Fluorescent Proteins/metabolism , Histones/metabolism , Hyphae/growth & development , Solanum lycopersicum/microbiology , Solanum lycopersicum/ultrastructure , Mitosis , Plant Diseases/microbiology , Plant Roots/microbiology , Plant Roots/ultrastructure , Spores, Fungal/cytology , Time Factors
12.
Mol Biol Cell ; 21(5): 753-66, 2010 Mar 01.
Article in English | MEDLINE | ID: mdl-20053682

ABSTRACT

In the multinucleate fungus Ashbya gossypii, cytoplasmic microtubules (cMTs) emerge from the spindle pole body outer plaque (OP) in perpendicular and tangential directions. To elucidate the role of cMTs in forward/backward movements (oscillations) and bypassing of nuclei, we constructed mutants potentially affecting cMT nucleation or stability. Hyphae lacking the OP components AgSpc72, AgNud1, AgCnm67, or the microtubule-stabilizing factor AgStu2 grew like wild- type but showed substantial alterations in the number, length, and/or nucleation sites of cMTs. These mutants differently influenced nuclear oscillation and bypassing. In Agspc72Delta, only long cMTs were observed, which emanate tangentially from reduced OPs; nuclei mainly moved with the cytoplasmic stream but some performed rapid bypassing. Agnud1Delta and Agcnm67Delta lack OPs; short and long cMTs emerged from the spindle pole body bridge/half-bridge structures, explaining nuclear oscillation and bypassing in these mutants. In Agstu2Delta only very short cMTs emanated from structurally intact OPs; all nuclei moved with the cytoplasmic stream. Therefore, long tangential cMTs promote nuclear bypassing and short cMTs are important for nuclear oscillation. Our electron microscopy ultrastructural analysis also indicated that assembly of the OP occurs in a stepwise manner, starting with AgCnm67, followed by AgNud1 and lastly AgSpc72.


Subject(s)
Cell Nucleus/metabolism , Cytoplasm/metabolism , Hyphae/physiology , Microtubules/metabolism , Mutation , Spindle Apparatus , Computational Biology/methods , Cytoskeleton/metabolism , Gene Deletion , Hyphae/metabolism , Microscopy, Electron/methods , Microscopy, Fluorescence/methods , Microtubule-Associated Proteins/metabolism , Models, Biological , Oscillometry/methods
13.
Mol Biol Cell ; 21(1): 18-28, 2010 Jan 01.
Article in English | MEDLINE | ID: mdl-19910487

ABSTRACT

We investigated the migration of multiple nuclei in hyphae of the filamentous fungus Ashbya gossypii. Three types of cytoplasmic microtubule (cMT)-dependent nuclear movements were characterized using live cell imaging: short-range oscillations (up to 4.5 microm/min), rotations (up to 180 degrees in 30 s), and long-range nuclear bypassing (up to 9 microm/min). These movements were superimposed on a cMT-independent mode of nuclear migration, cotransport with the cytoplasmic stream. This latter mode is sufficient to support wild-type-like hyphal growth speeds. cMT-dependent nuclear movements were led by a nuclear-associated microtubule-organizing center, the spindle pole body (SPB), which is the sole site of microtubule nucleation in A. gossypii. Analysis of A. gossypii SPBs by electron microscopy revealed an overall laminar structure similar to the budding yeast SPB but with distinct differences at the cytoplasmic side. Up to six perpendicular and tangential cMTs emanated from a more spherical outer plaque. The perpendicular and tangential cMTs most likely correspond to short, often cortex-associated cMTs and to long, hyphal growth-axis-oriented cMTs, respectively, seen by in vivo imaging. Each SPB nucleates its own array of cMTs, and the lack of overlapping cMT arrays between neighboring nuclei explains the autonomous nuclear oscillations and bypassing observed in A. gossypii hyphae.


Subject(s)
Eremothecium/cytology , Eremothecium/metabolism , Hyphae/cytology , Hyphae/metabolism , Microtubule-Organizing Center/metabolism , Microtubules/metabolism , Eremothecium/ultrastructure , Hyphae/ultrastructure , Microtubule-Organizing Center/ultrastructure , Microtubules/ultrastructure , Nuclear Envelope/ultrastructure , Rotation , Spindle Apparatus/ultrastructure
14.
Mol Cell Biol ; 29(3): 771-83, 2009 Feb.
Article in English | MEDLINE | ID: mdl-19029253

ABSTRACT

We analyzed the development of multiple septa in elongated multinucleated cells (hyphae) of the filamentous ascomycete Ashbya gossypii in which septation is apparently uncoupled from nuclear cycles. A key player for this compartmentalization is the PCH protein Hof1. Hyphae that are lacking this protein form neither actin rings nor septa but still elongate at wild-type speed. Using in vivo fluorescence microscopy, we present for the first time the coordination of cytokinesis and septation in multiseptated and multinucleated cells. Hof1, the type II myosin Myo1, the landmark protein Bud3, and the IQGAP Cyk1 form collars of cortical bars already adjacent to hyphal tips, thereby marking the sites of septation. While hyphae continue to elongate, these proteins gradually form cortical rings. This bar-to-ring transition depends on Hof1 and Cyk1 but not Myo1 and is required for actin ring assembly. The Fes/CIP4 homology (FCH) domain of Hof1 ensures efficient localization of Hof1, whereas ring integrity is conferred by the Src homology 3 (SH3) domain. Up to several hours after site selection, actin ring contraction leads to membrane invagination and subsequent cytokinesis. Simultaneously, a septum forms between the adjacent hyphal compartments, which do not separate. During evolution, A. gossypii lost the homologs of two enzymes essential for cell separation in Saccharomyces cerevisiae.


Subject(s)
Ascomycota/cytology , Ascomycota/metabolism , Cytokinesis , Fungal Proteins/metabolism , Hyphae/cytology , Actins/metabolism , Ascomycota/genetics , Cell Nucleus/metabolism , Cytokinesis/genetics , Fungal Proteins/chemistry , Gene Deletion , Genes, Fungal , Hyphae/metabolism , Models, Biological , Protein Binding , Protein Transport , Sequence Homology, Amino Acid , src Homology Domains
15.
J Cell Sci ; 121(Pt 23): 3878-89, 2008 Dec 01.
Article in English | MEDLINE | ID: mdl-18984630

ABSTRACT

We use the fungus Ashbya gossypii to investigate how its polar growth machinery is organized to achieve sustained hyphal growth. In slowly elongating hyphae exocyst, cell polarity and polarisome proteins permanently localize as cortical cap at hyphal tips, thus defining the zone of secretory vesicle fusion. In tenfold faster growing hyphae, this zone is only slightly enlarged demonstrating a capacity of hyphal growth zones to increase rates of vesicle processing to reach higher speeds. Concomitant with this increase, vesicles accumulate as spheroid associated with the tip cortex, indicating that a Spitzenkörper forms in fast hyphae. We also found spheroid-like accumulations for the exocyst components AgSec3, AgSec5, AgExo70 and the polarisome components AgSpa2, AgBni1 and AgPea2 (but not AgBud6 or cell polarity factors such as AgCdc42 or AgBem1). The localization of AgSpa2, AgPea2 and AgBni1 depend on each other but only marginally on AgBud6, as concluded from a set of deletions. Our data define three conditions to achieve fast growth at hyphal tips: permanent presence of the polarity machinery in a confined cortical area, organized accumulation of vesicles and a subset of polarity components close to this area, and spatial separation of the zones of exocytosis (tip front) and endocytosis (tip rim).


Subject(s)
Eremothecium/growth & development , Hyphae/growth & development , Cell Polarity , Eremothecium/metabolism , Fungal Proteins/analysis , Fungal Proteins/metabolism , Hyphae/metabolism , Hyphae/ultrastructure
16.
Fungal Genet Biol ; 45(6): 829-38, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18448364

ABSTRACT

The development from young, slowly growing hyphae to fast growing hyphae in filamentous fungi is referred to as hyphal maturation. We have identified the Paxillin-like protein AgPxl1 in Ashbyagossypii as a developmental protein that is specifically required for hyphal maturation. The early development of A.gossypii strains lacking AgPxl1 is indistinguishable from wild-type. However, at later developmental stages the maximal hyphal extension rate is less than half compared to wild-type and apical branching is affected. Apical branching is characterised as the symmetric division of fast growing hyphal tips resulting in two sister hyphae. In Agpxl1Delta strains two thirds of the apical branching events lead to asymmetric sister hyphae where growth of one branch is either completely aborted or slowed down while extension of the other branch is not affected. This suggests that AgPxl1 plays a role in the organisation of growth and efficient division of growth upon apical branching in mature mycelia. The conserved C-terminal LIM domains are necessary for AgPxl1 function and also contribute to tip localisation. AgCLA4, a PAK-like kinase, is epistatic to AgPXL1 and robust localisation of AgPxl1 depends on AgCla4. This suggests that AgCla4 acts upstream of AgPxl1.


Subject(s)
Fungal Proteins/metabolism , Hyphae/growth & development , Paxillin/metabolism , Saccharomycetales/growth & development , Saccharomycetales/metabolism , Amino Acid Sequence , Fungal Proteins/chemistry , Fungal Proteins/genetics , Hyphae/cytology , Hyphae/genetics , Hyphae/metabolism , Molecular Sequence Data , Paxillin/chemistry , Paxillin/genetics , Phosphotransferases/genetics , Phosphotransferases/metabolism , Protein Structure, Tertiary , Saccharomycetales/cytology , Saccharomycetales/genetics , Sequence Alignment
17.
Nat Cell Biol ; 9(7): 788-96, 2007 Jul.
Article in English | MEDLINE | ID: mdl-17546040

ABSTRACT

Nucleocytoplasmic transport occurs through nuclear pore complexes (NPCs) embedded in the nuclear envelope. Here, we discovered an unexpected role for yeast dynein light chain (Dyn2) in the NPC. Dyn2 is a previously undescribed nucleoporin that functions as molecular glue to dimerize and stabilize the Nup82-Nsp1-Nup159 complex, a module of the cytoplasmic pore filaments. Biochemical analyses showed that Dyn2 binds to a linear motif (termed DID(Nup159)) inserted between the Phe-Gly repeat and coiled-coil domain of Nup159. Electron microscopy revealed that the reconstituted Dyn2-DID(Nup159) complex forms a rigid rod-like structure, in which five Dyn2 homodimers align like 'pearls on a string' between two extented DID(Nup159) strands. These findings imply that the rigid 20 nm long Dyn2-DID(Nup159) filament projects the Nup159 Phe-Gly repeats from the Nup82 module. Thus, it is possible that dynein light chain plays a role in organizing natively unfolded Phe-Gly repeats within the NPC scaffold to facilitate nucleocytoplasmic transport.


Subject(s)
Dyneins/physiology , Nuclear Pore Complex Proteins/physiology , Nuclear Pore/physiology , Saccharomyces cerevisiae Proteins/physiology , Saccharomyces cerevisiae/metabolism , Active Transport, Cell Nucleus , Cell Nucleus/metabolism , Dimerization , Humans , Protein Binding , Protein Folding , Protein Structure, Tertiary
18.
BMC Genomics ; 8: 9, 2007 Jan 09.
Article in English | MEDLINE | ID: mdl-17212814

ABSTRACT

BACKGROUND: The Ashbya Genome Database (AGD) 3.0 is an innovative cross-species genome and transcriptome browser based on release 40 of the Ensembl developer environment. DESCRIPTION: AGD 3.0 provides information on 4726 protein-encoding loci and 293 non-coding RNA genes present in the genome of the filamentous fungus Ashbya gossypii. A synteny viewer depicts the chromosomal location and orientation of orthologous genes in the budding yeast Saccharomyces cerevisiae. Genome-wide expression profiling data obtained with high-density oligonucleotide microarrays (GeneChips) are available for nearly all currently annotated protein-coding loci in A. gossypii and S. cerevisiae. CONCLUSION: AGD 3.0 hence provides yeast- and genome biologists with comprehensive report pages including reliable DNA annotation, Gene Ontology terms associated with S. cerevisiae orthologues and RNA expression data as well as numerous links to external sources of information. The database is accessible at http://agd.vital-it.ch/.


Subject(s)
Databases, Genetic , Genome, Fungal , Saccharomyces cerevisiae/genetics , Saccharomycetales/genetics , Oligonucleotide Array Sequence Analysis
19.
Eukaryot Cell ; 6(3): 473-86, 2007 Mar.
Article in English | MEDLINE | ID: mdl-17122387

ABSTRACT

Cyclin protein behavior has not been systematically investigated in multinucleated cells with asynchronous mitoses. Cyclins are canonical oscillating cell cycle proteins, but it is unclear how fluctuating protein gradients can be established in multinucleated cells where nuclei in different stages of the division cycle share the cytoplasm. Previous work in A. gossypii, a filamentous fungus in which nuclei divide asynchronously in a common cytoplasm, demonstrated that one G1 and one B-type cyclin do not fluctuate in abundance across the division cycle. We have undertaken a comprehensive analysis of all G1 and B-type cyclins in A. gossypii to determine whether any of the cyclins show periodic abundance across the cell cycle and to examine whether cyclins exhibit functional redundancy in such a cellular environment. We localized all G1 and B-type cyclins and notably found that only AgClb5/6p varies in subcellular localization during the division cycle. AgClb5/6p is lost from nuclei at the meta-anaphase transition in a D-box-dependent manner. These data demonstrate that efficient nuclear autonomous protein degradation can occur within multinucleated cells residing in a common cytoplasm. We have shown that three of the five cyclins in A. gossypii are essential genes, indicating that there is minimal functional redundancy in this multinucleated system. In addition, we have identified a cyclin, AgClb3/4p, that is essential only for sporulation. We propose that the cohabitation of different cyclins in nuclei has led to enhanced substrate specificity and limited functional redundancy within classes of cyclins in multinucleated cells.


Subject(s)
Cell Nucleus Division/physiology , Cyclins/metabolism , Fungal Proteins/metabolism , Giant Cells/cytology , Mitosis/physiology , Saccharomycetales/cytology , Saccharomycetales/physiology , Active Transport, Cell Nucleus/physiology , Anaphase/physiology , Anaphase-Promoting Complex-Cyclosome , Biological Clocks/genetics , Cell Cycle/genetics , Cell Cycle/physiology , Cell Nucleus/metabolism , Cyclin B/genetics , Cyclin B/metabolism , Cyclin G , Cyclins/genetics , Fluorescent Antibody Technique , Fungal Proteins/genetics , Gene Expression Regulation, Fungal/genetics , Gene Expression Regulation, Fungal/physiology , Giant Cells/physiology , Metaphase/physiology , Mitosis/genetics , Nuclear Proteins/genetics , Nuclear Proteins/metabolism , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/metabolism , Saccharomyces cerevisiae Proteins/physiology , Ubiquitin-Protein Ligase Complexes
20.
Eukaryot Cell ; 6(2): 182-97, 2007 Feb.
Article in English | MEDLINE | ID: mdl-17158735

ABSTRACT

Regulated protein degradation is essential for eukaryotic cell cycle progression. The anaphase-promoting complex/cyclosome (APC/C) is responsible for the protein destruction required for the initiation of anaphase and the exit from mitosis, including the degradation of securin and B-type cyclins. We initiated a study of the APC/C in the multinucleated, filamentous ascomycete Ashbya gossypii to understand the mechanisms underlying the asynchronous mitosis observed in these cells. These experiments were motivated by previous work which demonstrated that the mitotic cyclin AgClb1/2p persists through anaphase, suggesting that the APC/C may not be required for the division cycle in A. gossypii. We have now found that the predicted APC/C components AgCdc23p and AgDoc1p and the targeting factors AgCdc20p and AgCdh1p are essential for growth and nuclear division. Mutants lacking any of these factors arrest as germlings with nuclei blocked in mitosis. A likely substrate of the APC/C is the securin homologue AgPds1p, which is present in all nuclei in hyphae except those in anaphase. The destruction box sequence of AgPds1p is required for this timed disappearance. To investigate how the APC/C may function to degrade AgPds1p in only the subset of anaphase nuclei, we localized components and targeting subunits of the APC/C. Remarkably, AgCdc23p, AgDoc1p, and AgCdc16p were found in all nuclei in all cell cycle stages, as were the APC/C targeting factors AgCdc20p and AgCdh1p. These data suggest that the AgAPC/C may be constitutively active across the cell cycle and that proteolysis in these multinucleated cells may be regulated at the level of substrates rather than by the APC/C itself.


Subject(s)
Anaphase/physiology , Ascomycota/cytology , Ubiquitin-Protein Ligase Complexes/physiology , Anaphase-Promoting Complex-Cyclosome , Ascomycota/genetics , Ascomycota/metabolism , Cell Cycle , Cell Nucleus/metabolism , Computational Biology , Fluorescent Antibody Technique , Fungal Proteins/metabolism , Mitosis , Plasmids , Proteasome Endopeptidase Complex , Ubiquitin-Protein Ligase Complexes/genetics , Ubiquitin-Protein Ligase Complexes/metabolism
SELECTION OF CITATIONS
SEARCH DETAIL
...