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1.
Soft Matter ; 18(47): 9086-9107, 2022 Dec 07.
Article in English | MEDLINE | ID: mdl-36426650

ABSTRACT

Model equations for the Rayleigh ratio and the electric field autocorrelation function are derived using thermodynamic fluctuation theory applied to crowded solute-containing micellar solutions and microemulsions with negligible molecular species and polydispersity. This theory invokes non-equilibrium thermodynamics and enforces local equilibrium between molecular solute, surfactant, and the various micellar species, in order to elucidate the influence of self-assembly on light scattering correlation functions. We find that self-assembly driven variations in the average micelle radius and aggregation number along gradients in concentration, which were previously shown to drive strong multicomponent diffusion effects expressed via the ternary diffusivity matrix [D], do not affect the scattering functions in the limit of zero local polydispersity. Hence, theoretical predictions for the Rayleigh ratio and the field autocorrelation function for ternary mixtures of solute-containing, locally monodisperse micellar solutions are identical to those developed for binary mixtures of monodisperse, colloidal hard spheres. However, self-assembly driven multicomponent diffusion phenomena are predicted to influence the thermodynamic driving forces for diffusion in these mixtures. In support of our theoretical results, measurements for the Rayleigh ratio and the field autocorrelation function for ternary aqueous solutions of decaethylene glycol monododecyl ether (C12E10) with either decane or limonene solute were performed for several molar ratios and volume fractions up to ϕ ≈ 0.25, and for binary mixtures of C12E10/water up to ϕ ≈ 0.5. Excellent agreement between our light scattering theory and experimental data is achieved for low to moderate volume fractions (ϕ < 0.3), and at higher concentrations when our theoretical results are corrected to account for micelle dehydration.

2.
J Neurosurg Case Lessons ; 3(12)2022 Mar 21.
Article in English | MEDLINE | ID: mdl-36273865

ABSTRACT

BACKGROUND: Patients with refractory, bilateral, multifocal epilepsy have few treatment options that typically include a combination of antiseizure medications (ASMs) and vagus nerve stimulation (VNS). A man in his 40s presented with epilepsy refractory to a combination of five ASMs plus VNS; he was still experiencing 7-10 seizures per week. His seizure network involved multiple foci in both frontal and temporal lobes. Bilateral depth electrodes were implanted into the centromedian/parafascicular (CM/PF) complex of the thalamus and connected to the responsive neurostimulation (RNS) system for closed-loop stimulation and neurophysiological monitoring. OBSERVATIONS: The patient reported clear improvement in his seizures since the procedure, with a markedly reduced number of seizures and decreased seizure intensity. He also reported stretches of seizure freedom not typical of his preoperative baseline, and his remaining seizures were milder, more often with preserved awareness. Generalized seizures with loss of consciousness have decreased to about one per month. RNS data confirmed a right-sided predominance of the bilateral seizure onsets. LESSONS: In this patient with multifocal, bilateral frontotemporal epilepsy, RNS of the CM/PF thalamic complex combined with VNS was found to be beneficial. The RNS device was able to detect seizures propagating through the thalamus, and stimulation produced a decrease in seizure burden and intensity.

3.
World Neurosurg ; 163: e146-e155, 2022 07.
Article in English | MEDLINE | ID: mdl-35338016

ABSTRACT

BACKGROUND: Metabolic syndrome (MetS) is a disorder characterized by a constellation of cardiometabolic risk factors including abdominal obesity, dyslipidemia, hypertension, and glucose intolerance that has been associated with adverse perioperative outcomes. We evaluated outcomes for patients with MetS after carotid endarterectomy (CEA) in the largest population to date. METHODS: We performed a matched cohort analysis using clinical data from 2012 to 2018 in the American College of Surgeons National Surgical Quality Improvement Program. We used propensity scores to match patients to attain covariate balance and used logistic regression to assess odds of unfavorable outcomes, including a predefined primary outcome of composite cardiovascular incident. RESULTS: We identified 50,423 eligible adult patients, of whom 14.2% qualified for MetS (n = 7156). Patients with MetS tended to have CEA at an earlier age, more functional dependence, and longer operative durations. After matching, MetS remained associated with the primary outcome of combined cardiovascular incident (odds ratio [OR], 1.42; 95% confidence interval [CI], 1.18-1.72; P < 0.001), stroke (OR, 1.44; 95% CI, 1.12-1.85; P = 0.004), prolonged length of stay (OR, 1.31; 95% CI, 1.18-1.44; P < 0.001), and discharge to facility (OR, 1.32; 95% CI, 1.08-1.61; P = 0.007). We also found that obesity alone is protective against combined cardiovascular incident, whereas hypertension with diabetes and MetS increase odds of a cardiovascular complication. CONCLUSIONS: Metabolic syndrome is associated with adverse outcomes for adult patients undergoing elective CEA.


Subject(s)
Carotid Stenosis , Endarterectomy, Carotid , Hypertension , Metabolic Syndrome , Stroke , Adult , Carotid Stenosis/etiology , Carotid Stenosis/surgery , Databases, Factual , Endarterectomy, Carotid/adverse effects , Humans , Hypertension/complications , Hypertension/epidemiology , Metabolic Syndrome/complications , Metabolic Syndrome/epidemiology , Obesity/etiology , Retrospective Studies , Risk Assessment , Risk Factors , Stroke/etiology , Treatment Outcome
4.
Epigenomics ; 13(23): 1853-1866, 2021 12.
Article in English | MEDLINE | ID: mdl-34802257

ABSTRACT

Background: Epigenomic changes occurring during surgery have been neglected in research; diabetes and hypertension can affect the epigenome but little is known about the epigenetics of skeletal muscle (SKM). Methods: DNA methylation was profiled via Illumina MethylationEPIC arrays in SKM samples obtained at the beginning and end of heart surgery with cardiopulmonary bypass. Results: Methylation in patients with hypertension and diabetes was significantly different, more so for uncontrolled diabetes; hypertension alone produced minimal effect. The affected pathways involved IL-1, IL-12, IL-18, TNF-α, IFN-γ, VEGF, NF-κB and Wnt signaling, apoptosis and DNA damage response. Significant changes occurred during surgery and included loci in the Hippo-YAP/TAZ pathway. Conclusion: Cardiopulmonary bypass surgery affects the SKM methylome, and the combination of hypertension and diabetes induces changes in the SKM epigenome in contrast to hypertension alone.


Subject(s)
Cardiopulmonary Bypass , DNA Methylation , Diabetes Mellitus , Hypertension , Muscle, Skeletal/metabolism , Aged , Cytokines/metabolism , Diabetes Mellitus/genetics , Diabetes Mellitus/metabolism , Diabetes Mellitus/surgery , Female , Hippo Signaling Pathway , Humans , Hypertension/genetics , Hypertension/metabolism , Hypertension/surgery , Male , Middle Aged , NF-kappa B/metabolism , Vascular Endothelial Growth Factor A/metabolism , Wnt Signaling Pathway
5.
Epilepsia ; 62(10): 2344-2356, 2021 10.
Article in English | MEDLINE | ID: mdl-34338302

ABSTRACT

OBJECTIVE: Laser interstitial thermal therapy (LITT) for mesial temporal lobe epilepsy (mTLE) is typically performed with one trajectory to target the medial temporal lobe (MTL). MTL structures such as piriform and entorhinal cortex are epileptogenic, but due to their relative geometry, they are difficult to target with one trajectory while simultaneously maintaining adequate ablation of the amygdala and hippocampus. We hypothesized that a two-trajectory approach could improve ablation of all relevant MTL structures. First, we created large-scale computer simulations to compare idealized one- vs two-trajectory approaches. A two-trajectory approach was then validated in an initial cohort of patients. METHODS: We used magnetic resonance imaging (MRI) from the Human Connectome Project (HCP) to create subject-specific target structures consisting of hippocampus, amygdala, and piriform/entorhinal/perirhinal cortex. An algorithm searched for safe potential trajectories along the hippocampal axis (catheter one) and along the amygdala-piriform axis (catheter two) and compared this to a single trajectory optimized over all structures. The proportion of each structure ablated at various burn radii was evaluated. A cohort of 11 consecutive patients with mTLE received two-trajectory LITT; demographic, operative, and outcome data were collected. RESULTS: The two-trajectory approach was superior to the one-trajectory approach at nearly all burn radii for all hippocampal subfields and amygdala nuclei (p < .05). Two-laser trajectories achieved full ablation of MTL cortical structures at physiologically realistic burn radii, whereas one-laser trajectories could not. Five patients with at least 1 year of follow-up (mean = 21.8 months) experienced Engel class I outcomes; 6 patients with less than 1 year of follow-up (mean = 6.6 months) are on track for Engel class I outcomes. SIGNIFICANCE: Our anatomic analyses and initial clinical results suggest that LITT amygdalohippocampotomy performed via two-laser trajectories may promote excellent seizure outcomes. Future studies are required to validate the long-term clinical efficacy and safety of this approach.


Subject(s)
Epilepsy, Temporal Lobe , Laser Therapy , Epilepsy, Temporal Lobe/diagnostic imaging , Epilepsy, Temporal Lobe/pathology , Epilepsy, Temporal Lobe/surgery , Hippocampus/diagnostic imaging , Hippocampus/pathology , Hippocampus/surgery , Humans , Laser Therapy/methods , Lasers , Magnetic Resonance Imaging/methods , Seizures/pathology , Treatment Outcome
6.
Plant Physiol ; 186(1): 373-387, 2021 05 27.
Article in English | MEDLINE | ID: mdl-33576825

ABSTRACT

Xylem networks are vulnerable to the formation and spread of gas embolisms that reduce water transport. Embolisms spread through interconduit pits, but the three-dimensional (3D) complexity and scale of xylem networks means that the functional implications of intervessel connections are not well understood. Here, xylem networks of grapevine (Vitis vinifera L.) were reconstructed from 3D high-resolution X-ray micro-computed tomography (microCT) images. Xylem network performance was then modeled to simulate loss of hydraulic conductivity under increasingly negative xylem sap pressure simulating drought stress conditions. We also considered the sensitivity of xylem network performance to changes in key network parameters. We found that the mean pit area per intervessel connection was constant across 10 networks from three, 1.5-m stem segments, but short (0.5 cm) segments fail to capture complete network connectivity. Simulations showed that network organization imparted additional resistance to embolism spread beyond the air-seeding threshold of pit membranes. Xylem network vulnerability to embolism spread was most sensitive to variation in the number and location of vessels that were initially embolized and pit membrane vulnerability. Our results show that xylem network organization can increase stem resistance to embolism spread by 40% (0.66 MPa) and challenge the notion that a single embolism can spread rapidly throughout an entire xylem network.


Subject(s)
Droughts , Vitis/physiology , Xylem/physiology , Biological Transport , Imaging, Three-Dimensional , X-Ray Microtomography
7.
Soft Matter ; 17(3): 531-542, 2021 Jan 21.
Article in English | MEDLINE | ID: mdl-33174585

ABSTRACT

Ternary diffusion coefficient matrices [D] were measured using the Taylor dispersion method, for crowded aqueous solutions of decaethylene glycol monododecyl ether (C12E10) with either decane or limonene solute. The matrix [D], for both systems, was found to be highly non-diagonal, and concentration dependent, over a broad domain of solute to surfactant molar ratios and micelle volume fractions. A recently developed theoretical model, based on Batchelor's theory for gradient diffusion in dilute, polydisperse mixtures of interacting spheres, was simplified by neglecting local polydispersity, and effectively used to predict [D] with no adjustable parameters. Even though the model originates from dilute theory, the theoretical results were in surprisingly good agreement with experimental data for concentrated mixtures, with volume fractions up to φ≈ 0.47. In addition, the theory predicts eigenvalues D- and D+ that correspond to long-time self and gradient diffusion coefficients, respectively, for monodisperse spheres, in reasonable agreement with experimental data.

8.
Langmuir ; 35(42): 13595-13606, 2019 Oct 22.
Article in English | MEDLINE | ID: mdl-31553616

ABSTRACT

Taylor dispersion and dynamic light scattering techniques were used to measure the ternary diffusivity matrix [D] and the micelle gradient diffusion coefficient, respectively, in crowded aqueous solutions of decaethylene glycol monododecyl ether (C12E10) and decane. The results indicate that C12E10 diffused down its own gradient with the micelle gradient diffusivity while decane diffused down a decane gradient at a much slower rate. Furthermore, strong diffusion coupling, comprising decane diffusion down a surfactant gradient and surfactant diffusion up a decane gradient, was also observed with cross diffusivities that were on the order of or larger than the main diffusivities. Measurements of the micelle aggregation number, hydration index, and the hydrodynamic radius, obtained using both static and dynamic light scattering methods, indicate that decane-containing micelles interacted as hard spheres and had radii and aggregation numbers that increased linearly with the molar ratio of solute to surfactant. A theoretical model, developed using Batchelor's theory for gradient diffusion in a polydisperse system of interacting hard spheres, was effectively used to predict [D] with no adjustable parameters. A comparison with the theory indicates that decane diffused down its own gradient by micelle self-diffusion while surfactant diffused down a surfactant gradient by micelle gradient diffusion. It is also shown that intermicellar interactions drove decane diffusion down a C12E10 gradient by a volume exclusion effect while an increase in the micelle aggregation number and hydrodynamic radius with decane was necessary to drive surfactant diffusion up a decane gradient.

9.
J Med Primatol ; 48(1): 54-57, 2019 02.
Article in English | MEDLINE | ID: mdl-30277264

ABSTRACT

Cervicovaginal bacteria cause inflammation which in turn increases HIV risk. Profiling the cervicovaginal microbiome, therefore, is instrumental for vaccine development. We show that the microbiome profile captured by cervicovaginal lavage is comparable to samples obtained by vaginal swabs. Thus, lavage may serve as a sampling strategy in NHP vaccine studies.


Subject(s)
Bacteria/isolation & purification , Cervix Uteri/microbiology , Macaca mulatta/microbiology , Microbiota , Specimen Handling/veterinary , Vagina/microbiology , Animals , Female , Specimen Handling/methods
10.
J Opt Soc Am A Opt Image Sci Vis ; 35(8): 1393-1400, 2018 Aug 01.
Article in English | MEDLINE | ID: mdl-30110276

ABSTRACT

Experimental data are presented that demonstrate the evolution of the anisotropy/isotropy of atmospheric statistics throughout the course of four days (two winter, two summer) near the ground over a concrete runway in Florida. In late January and early February of 2017, a 532 nm near-plane-wave beam was propagated 1 and 2 km at a height of 2 m above the runway, and irradiance fluctuations were captured on a CCD array. In August of 2017, a 532 nm Gaussian beam was propagated 100 m at a height of near 2 m, and fluctuation data were captured on a CCD array. Winter data were processed to calculate the covariance of intensity and summer data processed to calculate the scintillation index. The resulting contours indicated a consistent pattern of anisotropy early in the day, evolving into isotropy midday, and returning to anisotropy in late afternoon. Accompanying atmospheric and wind data are presented throughout the measurement days.

11.
Opt Lett ; 43(11): 2607-2610, 2018 Jun 01.
Article in English | MEDLINE | ID: mdl-29856441

ABSTRACT

Experimental measurements were recently made which displayed characteristics of plane wave propagation through anisotropic optical turbulence. A near-plane wave beam was propagated a distance of 1 and 2 km at a height of 2 m above the concrete runway at the Shuttle Landing Facility, Kennedy Space Center, Florida, during January and February of 2017. The spatial-temporal fluctuations of the beam were recorded, and the covariance of intensity was calculated. These data sets were compared to a theoretical calculation of covariance of intensity for a plane wave.

12.
Appl Opt ; 57(9): 2177-2187, 2018 Mar 20.
Article in English | MEDLINE | ID: mdl-29604011

ABSTRACT

Image distortions caused by atmospheric turbulence are often treated as unwanted noise or errors in many image processing studies. Our study, however, shows that in certain scenarios the turbulence distortion can be very helpful in enhancing image processing results. This paper describes a novel approach that uses the scintillation traits recorded on a video clip to perform object ranging with reasonable accuracy from a single camera viewpoint. Conventionally, a single camera would be confused by the perspective viewing problem, where a large object far away looks the same as a small object close by. When the atmospheric turbulence phenomenon is considered, the edge or texture pixels of an object tend to scintillate and vary more with increased distance. This turbulence induced signature can be quantitatively analyzed to achieve object ranging with reasonable accuracy. Despite the inevitable fact that turbulence will cause random blurring and deformation of imaging results, it also offers convenient solutions to some remote sensing and machine vision problems, which would otherwise be difficult.

13.
Langmuir ; 30(37): 11019-30, 2014 Sep 23.
Article in English | MEDLINE | ID: mdl-25137032

ABSTRACT

Holographic interferometry was used to obtain new results for the four coefficients that determine rates of multicomponent diffusion of hydrophobic solutes and surfactants in microemulsions. The three solutes pentanol, octanol, and heptane were examined in microemulsions formed from decaethylene glycol monododecyl ether (C12E10) and sodium dodecyl sulfate (SDS). These coefficients are compared with relevant binary and effective binary diffusion coefficients, and also with ternary diffusion coefficients reported in the literature. It is shown that a strong coupling exists between the diffusion of hydrophobic solutes and surfactant in solute-containing microemulsions. In particular, the presence of a gradient in the concentration of the solute can induce a surprisingly large flux of surfactant either up or down the solute gradient. Within the framework of irreversible thermodynamics, these results indicate that hydrophobic solute molecules significantly alter the chemical potential of the surfactant in microemulsions. These effects are present to a comparable degree for both the nonionic C12E10 and ionic SDS microemulsions.


Subject(s)
Diffusion , Emulsions/chemistry , Micelles , Surface-Active Agents/chemistry , Hydrophobic and Hydrophilic Interactions , Solutions , Thermodynamics
14.
J Theor Biol ; 333: 146-55, 2013 Sep 21.
Article in English | MEDLINE | ID: mdl-23743143

ABSTRACT

Long distance water and nutrient transport in plants is dependent on the proper functioning of xylem networks, a series of interconnected pipe-like cells that are vulnerable to hydraulic dysfunction as a result of drought-induced embolism and/or xylem-dwelling pathogens. Here, flow in xylem vessels was modeled to determine the role of vessel connectivity by using three dimensional xylem networks derived from High Resolution Computed Tomography (HRCT) images of grapevine (Vitis vinifera cv. 'Chardonnay') stems. Flow in 4-27% of the vessel segments (i.e. any section of vessel elements between connection points associated with intervessel pits) was found to be oriented in the direction opposite to the bulk flow under normal transpiration conditions. In order for the flow in a segment to be in the reverse direction, specific requirements were determined for the location of connections, distribution of vessel endings, diameters of the connected vessels, and the conductivity of the connections. Increasing connectivity and decreasing vessel length yielded increasing numbers of reverse flow segments until a maximum value was reached, after which more interconnected networks and smaller average vessel lengths yielded a decrease in the number of reverse flow segments. Xylem vessel relays also encouraged the formation of reverse flow segments. Based on the calculated flow rates in the xylem network, the downward spread of Xylella fastidiosa bacteria in grape stems was modeled, and reverse flow was shown to be an additional mechanism for the movement of bacteria to the trunk of grapevine.


Subject(s)
Vitis/metabolism , Water/metabolism , Xylem/metabolism , Biological Transport , Plant Diseases/microbiology , Vitis/microbiology , Xylella/metabolism , Xylem/microbiology
15.
New Phytol ; 191(4): 1168-1179, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21569032

ABSTRACT

Connections between xylem vessels represent important links in the vascular network, but the complexity of three-dimensional (3D) organization has been difficult to access. This study describes the development of a custom software package called TANAX (Tomography-derived Automated Network Analysis of Xylem) that automatically extracts vessel dimensions and the distribution of intervessel connections from high-resolution computed tomography scans of grapevine (Vitis vinifera) stems, although the method could be applied to other species. Manual and automated analyses of vessel networks yielded similar results, with the automated method generating orders of magnitude more data in a fraction of the time. In 4.5-mm-long internode sections, all vessels and all intervessel connections among 115 vessels were located, and the connections were analyzed for their radial distribution, orientation, and predicted shared wall area. Intervessel connections were more frequent in lateral than in dorsal/ventral zones. The TANAX-reconstructed network, in combination with commercial software, was used to visualize vessel networks in 3D. The 3D volume renderings of vessel networks were freely rotated for observation from any angle, and the 4.5 µm virtual serial sections were capable of being viewed in any plane, revealing aspects of vessel organization not possible with traditional serial sections.


Subject(s)
Electronic Data Processing/methods , Imaging, Three-Dimensional/methods , Tomography, X-Ray Computed/methods , Vitis/cytology , Xylem/ultrastructure , Algorithms , Microscopy, Electron, Scanning , Plant Stems/ultrastructure , Software , Vitis/anatomy & histology , Xylem/anatomy & histology
16.
J Colloid Interface Sci ; 356(1): 165-75, 2011 Apr 01.
Article in English | MEDLINE | ID: mdl-21272891

ABSTRACT

The gradient diffusion of ionic sodium dodecyl sulfate micelles in agarose gel was investigated at moderate concentrations above the CMC. Of particular interest were the effects of micelle, gel, and sodium chloride concentration on the micelle diffusivity. Holographic interferometry was used to measure the gradient diffusion coefficient at three sodium chloride concentrations (0, 0.03, 0.10 M), three gel concentrations (0, 1, 2 wt%), and several surfactant concentrations. Time-resolved fluorescence quenching was used to measure aggregation numbers both in solution and gel. The micelle diffusivity increased linearly with surfactant concentration at the two larger sodium chloride concentrations and all gel concentrations. In general, the strength of this effect increased with decreasing sodium chloride concentration and increased with gel concentration. This behavior is evidence of decreasing micelle-micelle electrostatic interactions with increasing sodium chloride concentrations, and increasing excluded volume effects and hydrodynamic screening with increasing gel concentration, respectively. The only exception was at 0.1M sodium chloride and 2 wt% agarose, which showed a slight reduction in the slope compared to 1 wt% agarose. It was found that the concentration effect is quite strong for charged solutes: at a NaCl concentration of 0.03 M in a 2% agarose gel, in a solution with 3% SDS micelles by volume, the micelle diffusion coefficient is doubled relative to its value in the same gel at infinite dilution. The extrapolated, infinite-dilution diffusion coefficients and the rate at which the micelle diffusivity increased with surfactant concentration were compared with predictions of previously published theories in which the micelles are treated as charged, colloidal spheres and the gel as a Brinkman medium. The experimental data and theoretical predictions were in good agreement.


Subject(s)
Diffusion , Micelles , Sodium Dodecyl Sulfate/metabolism , Gels/chemistry , Hydrodynamics , Interferometry , Ions , Models, Theoretical , Pyrenes/metabolism , Sepharose/chemistry , Sodium Chloride/chemistry , Sodium Dodecyl Sulfate/chemistry , Solutions/chemistry , Spectrometry, Fluorescence , Static Electricity
17.
J Colloid Interface Sci ; 353(2): 467-75, 2011 Jan 15.
Article in English | MEDLINE | ID: mdl-20970810

ABSTRACT

A population balance is used to examine the effect of the shape of the initial drop-size distribution of an emulsion upon its short and long-time evolution in simple shear flow. Initial distributions that are monodisperse, multidisperse, lognormal, bimodal, multimodal, and step functions are considered. At short times, it is shown that the rate of coalescence decreases by up to 25% for step distributions and up to 75% for lognormal distributions as the width of the distribution increases. Bimodal, multidisperse and multimodal distributions show intermediate decreases in the rate of coalescence, between these two values, with increases in the distribution width. Furthermore, it is found that the initial rate of coalescence is strongly dependent upon the presence of large drops. As the number fraction of large droplets within the distribution increases, the rate of coalescence also increases. At long times, all distributions move toward an asymptotic distribution shape in which the frequency of drops decreases algebraically with drop diameter at small drop diameters, and decreases exponentially with drop diameter at large drop diameters. Though portions of each distribution showed the expected asymptotic scaling behavior at long times, each asymptotic distribution nevertheless retains 'fingerprints' of the respective initial distribution. Overall, the rate of coalescence for a system is bounded by the initial rate, which is a function of the initial distribution shape, and the asymptotic rate, which is dependent upon the long-time scaling behavior. Finally, it is shown that the resolution with which the drop-size distribution of an emulsion is experimentally measured can have a significant effect upon predicted rates of coalescence.

18.
Theor Appl Genet ; 119(7): 1255-64, 2009 Nov.
Article in English | MEDLINE | ID: mdl-19707741

ABSTRACT

Oat-maize addition (OMA) lines with one, or occasionally more, chromosomes of maize (Zea mays L., 2n = 2x = 20) added to an oat (Avena sativa L., 2n = 6x = 42) genomic background can be produced via embryo rescue from sexual crosses of oat x maize. Self-fertile disomic addition lines of different oat genotypes, mainly cultivar Starter, as recipient for maize chromosomes 1, 2, 3, 4, 5, 6, 7, 9, and the short arm of 10 and a monosomic addition line for chromosome 8, have been reported previously in which the sweet corn hybrid Seneca 60 served as the maize chromosome donor. Here we report the production and characterization of a series of new OMA lines with inbreds B73 and Mo17 as maize chromosome donors and with oat cultivars Starter and Sun II as maize chromosome recipients. Fertile disomic OMA lines were recovered for B73 chromosomes 1, 2, 4, 5, 6, 8, 9, and 10 and Mo17 chromosomes 2, 4, 5, 6, 8, and 10. These lines together with non-fertile (oat x maize) F(1) plants with chromosome 3 and chromosome 7 of Mo17 individually added to Starter oat provide DNA of additions to oat of all ten individual maize chromosomes between the two maize inbreds. The Mo17 chromosome 10 OMA line was the first fertile disomic OMA line obtained carrying a complete chromosome 10. The B73 OMA line for chromosome 1 and the B73 and Mo17 OMA lines for chromosome 8 represent disomic OMA lines with improved fertility and transmission of the addition chromosome compared to earlier Seneca 60 versions. Comparisons among the four oat-maize parental genotype combinations revealed varying parental effects and interactions on frequencies of embryo recovery, embryo germination, F(1) plantlets with maize chromosomes, the specific maize chromosomes retained and transmitted to F(2) progeny, and phenotypes of self-fertile disomic addition plants. As opposed to the previous use of a hybrid Seneca 60 maize stock as donor of the added maize chromosomes, the recovered B73 and Mo17 OMA lines provide predictable genotypes for use as tools in physical mapping of maize DNA sequences, including inter-genic sequences, by simple presence/absence assays. The recovered OMA lines represent unique materials for maize genome analysis, genetic, physiological, and morphological studies, and a possible means to transfer maize traits to oat. Descriptions of these materials can be found at http://agronomy.cfans.umn.edu/Maize_Genomics.html .


Subject(s)
Avena/genetics , Chromosomes, Plant , Phenotype , Zea mays/genetics , DNA, Plant/genetics , DNA, Plant/isolation & purification , Genetic Markers , Genome, Plant , Genomics , Hybridization, Genetic , Microsatellite Repeats , Polymerase Chain Reaction
19.
J Colloid Interface Sci ; 338(1): 250-60, 2009 Oct 01.
Article in English | MEDLINE | ID: mdl-19552914

ABSTRACT

An analytic solution is derived for the hindered diffusion of charged, small solutes in charged, cylindrical pores in which the pore wall potential consists of the sum of an average and an oscillatory component. When the oscillatory contribution is absent, the effect of electrostatic interactions on diffusion is negligible. However, when the wall potential or surface charge density varies axially, electrostatic interactions hinder the rate of diffusion significantly, and can stop it completely if "choke points" develop where the solute concentration becomes zero. The degree of hindrance is generally weaker when the electrostatic charge on the pore wall and the charge on the solute have the same signs, leading to a repulsion, than it is in the presence of an attraction. The electrostatic hindrance is also affected by the length scale of the axial variation along the pore wall, becoming stronger as that length grows, until an asymptotic value is reached. The theory for the effect of variations of the electrostatic potential on rates of diffusion is shown to be in good agreement with experimental data taken from the literature. The results here are obtained by using generalized Taylor dispersion theory, and are therefore rigorous predictions of what occurs over times long enough that the solute diffuses through a tube many times longer than a single periodic cell. The electrostatic interactions are calculated using the linear Poisson-Boltzmann equation.

20.
J Hered ; 99(2): 85-93, 2008.
Article in English | MEDLINE | ID: mdl-18216028

ABSTRACT

Centromere positions on 7 maize chromosomes were compared on the basis of data from 4 to 6 mapping techniques per chromosome. Centromere positions were first located relative to molecular markers by means of radiation hybrid lines and centric fission lines recovered from oat-maize chromosome addition lines. These centromere positions were then compared with new data from centric fission lines recovered from maize plants, half-tetrad mapping, and fluorescence in situ hybridizations and to data from earlier studies. Surprisingly, the choice of mapping technique was not the critical determining factor. Instead, on 4 chromosomes, results from all techniques were consistent with a single centromere position. On chromosomes 1, 3, and 6, centromere positions were not consistent even in studies using the same technique. The conflicting centromere map positions on chromosomes 1, 3, and 6 could be explained by pericentric inversions or alternative centromere positions on these chromosomes.


Subject(s)
Centromere/genetics , Chromosome Mapping , Chromosomes, Plant , Zea mays/genetics , In Situ Hybridization, Fluorescence
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