ABSTRACT
Human rotavirus A (RVA) is the major infectious virus causing acute watery diarrhea in children, especially those younger than 5 years of age, and is a major public health problem in Thailand. Outbreaks of this virus have been reported worldwide. Besides the common genotypes, unusual genotypes providing evidence of inter-species transmission have also been described. Therefore, the aim of this study was to investigate the prevalence and genotypes of RVA in Thailand. A total of 688 samples were collected from children who were hospitalized with acute diarrhea in Chumphae Hospital in Khon Kaen and Chulalongkorn Hospital in Bangkok. RVA was detected using one-step RT-PCR and the genotypes were evaluated by sequencing. Overall, 204 of the 688 samples (30%) were positive for RVA. Nine genotypes were identified: three common in humans (G1P[8] [53%], G2P[4] [18%], G3P[8] [12%]), one feline-like (G3P[9] [1%]), four porcine-like (G4P[6] [0.5%], G5P[6] [0.5%], G9P[8] [0.5%], G12P[6] [1.5%]), and one bovine-like (G8P[8] [13%]). The variation in virus genotypes and the animal-like genotypes detected in this study suggested that a high diversity of RVA types is circulating in the Thai population. Therefore, continuous molecular epidemiological monitoring of RVA is essential and has implications for the national vaccination program.
Subject(s)
Diarrhea/virology , Rotavirus Infections/epidemiology , Rotavirus/classification , Rotavirus/genetics , Adolescent , Child , Child, Preschool , Feces/virology , Genetic Variation , Genotype , Humans , Infant , Infant, Newborn , Phylogeny , Prevalence , RNA, Viral/analysis , Rotavirus/isolation & purification , Rotavirus Infections/virology , Sequence Analysis, RNA , ThailandABSTRACT
Norovirus (NoV) is a major cause of nonbacterial acute gastroenteritis worldwide. New strains emerge partly due to viral recombination. In Thailand, there is a lack of data on NoV recombinants among clinical isolates. We screened stool samples from pediatric diarrheal patients for norovirus by RT-PCR and found GII.4 to be the most prevalent genotype. Phylogenetic and SimPlot analyses detected seven intra-genogroup recombinant strains: three GII.21/GII.3, two GII.12/GII.3, and two GII.12/GII.1 recombinants. Maximum chi-square analysis indicated that all had similar breakpoints near the ORF1/ORF2 junction (p < 0.001), either slightly upstream within the C-terminus of RdRp or downstream within the N-terminal domain of VP1.
Subject(s)
Caliciviridae Infections/virology , Norovirus/genetics , Recombination, Genetic , Feces/virology , Genotype , Humans , Molecular Sequence Data , Norovirus/classification , Norovirus/isolation & purification , Phylogeny , RNA, Viral/genetics , ThailandABSTRACT
Norovirus is a leading cause of acute non-bacterial gastroenteritis worldwide, affecting developing and developed countries, both children and adults. This study describes an outbreak of acute gastroenteritis at a daycare center of a tertiary level hospital in Bangkok, Thailand during October 2014. Although none of the staff became symptomatic, 8 of 11 children attending the center and 4 of their household contacts developed acute gastroenteritis. No pathogenic bacteria or rotavirus were detected in their evaluation; however, 3 out of 7 stool samples from the cases were positive for norovirus GII.17. Reverse transcriptase polymerase chain reaction analysis with sequence and phylogenetic analysis revealed the viral strain was the same strain reported from Taiwan in 2013. Because norovirus is a frequent cause of outbreaks in crowded conditions, early detection and preventive measures are important to control outbreaks.
