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2.
Perspect Biol Med ; 58(4): 518-25, 2015.
Article in English | MEDLINE | ID: mdl-27397056

ABSTRACT

During my journey from scientist to writer, I confronted similar challenges. Scientists gather factual information to investigate Nature, but they also rely on narration and speculation to link discrete data points into a seamless story that fits current perspectives for acceptance; writers link specific events as steppingstones to write internally consistent stories that relate, however tenuously, to common experiences. The historical development of the gene concept exemplifies the narrative quality of science. Both science and writing, including fiction, always remain as works in progress. In addition to similarities, science and writing have complementary differences. Science involves performing experiments to resolve external mysteries of Nature; writing explores experiences to confront internal feelings. Scientists strive for meaningful conclusions, which are continually subject to change; writers, especially novelists, dwell in ambiguity and conflicts, which are never fully resolved. Taken together, I consider my efforts in science and writing as blended forms of creative self-expression.


Subject(s)
Literature , Science/organization & administration , Writing , Emotions , Humans , Imagination , Narration
3.
PLoS One ; 6(4): e17904, 2011 Apr 11.
Article in English | MEDLINE | ID: mdl-21494593

ABSTRACT

The stress-inducible small heat shock protein (shsp)/αB-crystallin gene is expressed highly in the lens and moderately in other tissues. Here we provide evidence that it is a target gene of the aryl hydrocarbon receptor (AhR) transcription factor. A sequence (-329/-323, CATGCGA) similar to the consensus xenobiotic responsive element (XRE), called here XRE-like, is present in the αBE2 region of αB-crystallin enhancer and can bind AhR in vitro and in vivo. αB-crystallin protein levels were reduced in retina, lens, cornea, heart, skeletal muscle and cultured muscle fibroblasts of AhR(-/-) mice; αB-crystallin mRNA levels were reduced in the eye, heart and skeletal muscle of AhR(-/-) mice. Increased AhR stimulated αB-crystallin expression in transfection experiments conducted in conjunction with the aryl hydrocarbon receptor nuclear translocator (ARNT) and decreased AhR reduced αB-crystallin expression. AhR effect on aB-crystallin promoter activity was cell-dependent in transfection experiments. AhR up-regulated αB-crystallin promoter activity in transfected HeLa, NIH3T3 and COS-7 cells in the absence of exogenously added ligand (TCDD), but had no effect on the αB-crystallin promoter in C(2)C(12), CV-1 or Hepa-1 cells with or without TCDD. TCDD enhanced AhR-stimulated αB-crystallin promoter activity in transfected αTN4 cells. AhR could bind to an XRE-like site in the αB-crystallin enhancer in vitro and in vivo. Finally, site-specific mutagenesis experiments showed that the XRE-like motif was necessary for both basal and maximal AhR-induction of αB-crystallin promoter activity. Our data strongly suggest that AhR is a regulator of αB-crystallin gene expression and provide new avenues of research for the mechanism of tissue-specific αB-crystallin gene regulation under normal and physiologically stressed conditions.


Subject(s)
Gene Expression Regulation , Receptors, Aryl Hydrocarbon/metabolism , alpha-Crystallin B Chain/genetics , Animals , Aryl Hydrocarbon Receptor Nuclear Translocator/metabolism , Base Sequence , Binding Sites , Binding, Competitive/drug effects , DNA, Intergenic/genetics , Enhancer Elements, Genetic/genetics , Gene Expression Regulation/drug effects , Gene Knockdown Techniques , HSP27 Heat-Shock Proteins/genetics , HSP27 Heat-Shock Proteins/metabolism , HeLa Cells , Humans , Ligands , Mice , Molecular Sequence Data , Organ Specificity/drug effects , Polychlorinated Dibenzodioxins/pharmacology , Promoter Regions, Genetic/genetics , Protein Binding/drug effects , Receptors, Aryl Hydrocarbon/deficiency , alpha-Crystallin B Chain/metabolism
4.
Invest Ophthalmol Vis Sci ; 52(7): 4158-68, 2011 Jun 13.
Article in English | MEDLINE | ID: mdl-21447684

ABSTRACT

PURPOSE: To assess whether Pax6 functions directly in the cornea, a corneal-preferred promoter was used to overexpress Pax6 specifically in the cornea. METHODS: Transgenic mice harboring a construct containing mouse Pax6 coding sequences fused downstream of the aldehyde dehydrogenase 3a1 (Aldh3a1) promoter were generated (Pax6 Tg). Pax6 expression was analyzed by Western blot and immunohistochemistry. Eye sections were stained with hematoxylin and eosin, Schiff reagent, and fluorescein, to assess morphologic changes, the presence of goblet cells, and barrier integrity, respectively. Gene expression changes in mildly affected Pax6 Tg corneas were compared to age-matched, wild-type (WT) corneas by microarray analysis and quantitative PCR. Promoter regulation of several differentially expressed genes was examined by monitoring luciferase activity of reporter constructs after cotransfection with Pax6 in COS7 cells. RESULTS: Corneal overexpression of Pax6 produces an abnormal cornea with altered epithelial cell morphology, neovascularization, immune cell invasion, and a compromised barrier; the lens appeared normal. Major changes in expression of genes involved in immune function, vascularization, and epithelial differentiation occurred in corneas from Pax6 Tg versus WT mice. The keratin (K) profile was dramatically altered in the Pax6 Tg corneas, as were several components of the Wnt signaling pathway. In severely affected Pax6 Tg corneas, K12 was reduced, and Pax6 was redistributed into the cytoplasm. Promoters from the chitinase 3-like 3, Wnt inhibitory factor 1, and fms-related tyrosine kinase 1/soluble VEGF receptor genes were upregulated five-, seven-, and threefold, respectively, by Pax6 in transfected COS7 cells. CONCLUSIONS: Pax6 functions directly to maintain normal, corneal epithelial cells.


Subject(s)
Cornea/metabolism , Epithelium, Corneal/pathology , Eye Proteins/metabolism , Homeodomain Proteins/metabolism , Paired Box Transcription Factors/metabolism , Repressor Proteins/metabolism , Up-Regulation , Adaptor Proteins, Signal Transducing , Animals , Blotting, Western , COS Cells , Cell Differentiation/genetics , Chitinases/genetics , Chlorocebus aethiops , Cornea/blood supply , Cornea/immunology , Cornea/pathology , Corneal Opacity/etiology , Corneal Opacity/pathology , Epithelial Cells/pathology , Epithelium, Corneal/immunology , Extracellular Matrix Proteins/genetics , Eye Proteins/genetics , Gene Expression , Homeodomain Proteins/genetics , Immunohistochemistry , In Vitro Techniques , Intercellular Signaling Peptides and Proteins/genetics , Keratin-12/genetics , Keratin-12/metabolism , Keratins/metabolism , Lens, Crystalline/metabolism , Mice , Mice, Transgenic , Neovascularization, Pathologic , PAX6 Transcription Factor , Paired Box Transcription Factors/genetics , Phenotype , Promoter Regions, Genetic , RNA, Messenger/metabolism , Repressor Proteins/genetics , Signal Transduction , Tissue Distribution , Vascular Endothelial Growth Factor Receptor-1/genetics , Wnt Proteins/metabolism
5.
Invest Ophthalmol Vis Sci ; 52(3): 1762-9, 2011 Mar.
Article in English | MEDLINE | ID: mdl-21051695

ABSTRACT

PURPOSE: Previously, the authors showed that Klf4-conditional null (Klf4CN) corneas display epithelial fragility. Here, they investigated the mechanism by which Klf4 regulates corneal epithelial barrier function. METHODS: Klf4CN mice were generated by breeding Le-Cre with Klf4-LoxP mice. Fluorescein staining was used to test the corneal barrier function. RT-PCR, immunoblots, and immunofluorescence were used to detect the expression of cell junctional proteins. The effect of Klf4 on promoter activities was measured by transient cotransfection assays. Trans-epithelial electrical resistance (TEER) was used to measure the barrier-forming ability of control or anti-KLF4 siRNA-treated cells. RESULTS: Increased fluorescein staining and decreased tight junction protein Tjp1 expression demonstrated that the Klf4CN corneal epithelial barrier function is defective. Expression of desmosomal components Dsp, Dsg-1a, and Dsg-1b was downregulated in the Klf4CN corneas, and their corresponding promoter activities were upregulated by Klf4 in transient cotransfection assays. Hemidesmosomal α3- and ß4-integrin levels were not affected even though there were fewer hemidesmosomes in the Klf4CN corneas. The basement membrane components laminin-α5, -α3, -ß3, and -ß1-1 were downregulated, suggesting that the disrupted basement membrane is responsible for fewer hemidesmosomes in the Klf4CN cornea. Tight junction proteins OCLN1 and TJP1were downregulated in anti-KLF4 siRNA-treated cells, which failed to develop epithelial barrier function as measured by TEER. CONCLUSIONS: Klf4 contributes to corneal epithelial barrier function by upregulating the expression of functionally related subsets of cell junctional proteins and basement membrane components.


Subject(s)
Epithelium, Corneal/metabolism , Kruppel-Like Transcription Factors/physiology , Tight Junctions/metabolism , Animals , Basement Membrane/metabolism , Cells, Cultured , Fluorescein/metabolism , Fluorescent Antibody Technique, Indirect , Immunoblotting , Kruppel-Like Factor 4 , Membrane Proteins/genetics , Membrane Proteins/metabolism , Mice , Permeability , RNA, Small Interfering/pharmacology , Reverse Transcriptase Polymerase Chain Reaction , Transfection , Up-Regulation/physiology , Zinc Fingers/physiology
6.
Perspect Biol Med ; 53(4): 571-83, 2010.
Article in English | MEDLINE | ID: mdl-21037410

ABSTRACT

After almost 50 years in science, I believe that there is an acceptable, often advantageous chasm between open-ended basic research-free exploration without a practical destination and in which the original ideas may fade into new concepts-and translational research or clinical research. My basic research on crystalline (proteins conferring the optical properties of the eye lens) led me down paths I never would have considered if I were conducting translational research. My investigations ranged from jellyfish to mice and resulted in the gene-sharing concept, which showed that the same protein can have distinct molecular functions depending upon its expression pattern and, conversely, that different proteins can serve similar functional roles. This essay portrays basic science as a creative narrative, comparable to literary and artistic endeavors. Preserving the autonomy of open-ended basic research and recognizing its artistic, narrative qualities will accelerate the development of innovative concepts, create a rich resource of information feeding translational research, and have a positive impact by attracting creative individuals to science.


Subject(s)
Research , Science , Animals , Biomedical Research , Humans , Philosophy
7.
Dev Dyn ; 238(9): 2388-400, 2009 Sep.
Article in English | MEDLINE | ID: mdl-19681134

ABSTRACT

Dicer, a ribonuclease essential for miRNA processing, is expressed abundantly in developing mouse cornea and lens. We studied the roles of Dicer and miRNAs in eye development by conditionally deleting the Dicer gene in the mouse lens and corneal epithelium. Adult Dicer conditional null (DicerCN) mice had severe microphthalmia with no discernible lens and a poorly stratified corneal epithelium. Targeted deletion of Dicer effectively inhibited miRNA processing in the developing lens at 12.5 day of embryogenesis (E12.5). Lens development initiated normally but underwent progressive dystrophy between E14.5 and E18.5. Microarray analysis revealed activation of P53 signaling in DicerCN lenses at E13.5, consistent with increased apoptosis and reduced cell proliferation between E12.5 and E14.5. Expression of Pax6 and other lens developmental transcription factors were not greatly affected between E12.5 and E14.5 but decreased as the lens degenerated. Our data indicated an indispensible role for Dicer and miRNAs in lens and corneal development.


Subject(s)
DEAD-box RNA Helicases/physiology , Endoribonucleases/physiology , Epithelium, Corneal/metabolism , Eye/metabolism , Lens, Crystalline/metabolism , Morphogenesis/physiology , Animals , Cell Proliferation , DEAD-box RNA Helicases/genetics , Endoribonucleases/genetics , Epithelium, Corneal/embryology , Eye/embryology , Immunohistochemistry , Lens, Crystalline/embryology , Mice , MicroRNAs/genetics , MicroRNAs/physiology , Morphogenesis/genetics , Oligonucleotide Array Sequence Analysis , Reverse Transcriptase Polymerase Chain Reaction , Ribonuclease III
8.
Dev Dyn ; 238(10): 2633-40, 2009 Oct.
Article in English | MEDLINE | ID: mdl-19681161

ABSTRACT

Scinderin, the closest homologue of the actin-severing protein, gelsolin, has two similar paralogs (Scinla and Scinlb) in zebrafish. Scinla is abundant in the adult cornea; Scinlb comprises considerably less corneal protein. Here, we show that scinla is expressed in the nose, lens, brain, cornea and annular ligament of the iridocorneal angle; by contrast, scinlb is expressed in the hatching gland, floor plate, notochord, otic vesicle, brain, pharynx, cartilage, swim bladder and cornea. Activity of scinla and scinlb promoter fragments driving the EGFP reporter gene in transgenic zebrafish resembled scinla or scinlb expression. Previously, we showed that reduction of scinla by injection of antisense morpholino oligonucleotides ventralized embryos; here, specific reduction of scinlb expression led to subtle brain abnormalities associated with increased cell death, decreased shhb expression in the floor plate, and slightly reduced eye distance. Thus, scinla and scinlb have different expression patterns and developmental roles during zebrafish development.


Subject(s)
Body Patterning , Gelsolin/genetics , Gene Expression Regulation, Developmental , Zebrafish Proteins/genetics , Zebrafish , Amino Acid Sequence , Animals , Animals, Genetically Modified , Embryo, Nonmammalian/anatomy & histology , Embryo, Nonmammalian/physiology , Gelsolin/metabolism , In Situ Hybridization , Molecular Sequence Data , Oligonucleotides, Antisense/genetics , Oligonucleotides, Antisense/metabolism , Promoter Regions, Genetic , Protein Isoforms/genetics , Protein Isoforms/metabolism , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Sequence Alignment , Zebrafish/anatomy & histology , Zebrafish/embryology , Zebrafish/physiology , Zebrafish Proteins/metabolism
9.
Int J Dev Biol ; 53(4): 469-82, 2009.
Article in English | MEDLINE | ID: mdl-19378250

ABSTRACT

Pax transcription factors are evolutionarily conserved regulators of eye development and can be distinguished on the basis of three functional domains: two DNA-binding domains (the paired domain and the paired-type homeodomain), and the octapeptide motif. PaxB of the eyed cubozoan jellyfish, Tripedalia cystophora, is characterized by a Pax2-like paired domain and octapeptide, and a Pax6-like homeodomain. In mice, functionally distinct Pax6 and Pax2 proteins have unique as well as redundant roles in eye morphogenesis. Here, we show that expression of the jellyfish PaxB gene in mouse embryonic eye tissues impairs normal development of lens and retina. Our data show that PaxB misexpression leads to a downregulation of endogenous Pax6 protein in the prospective lens and in subsets of cells within the inner nuclear layer of transgenic retina. In addition to Pax6 downregulation, the expression of PaxB leads to an almost complete loss of amacrine cells in the adult transgenic retina, a phenotype that differs from a loss-of-function of the Pax6 gene. The present data suggest that PaxB, due to its Pax2-like paired domain and Pax-6 like homeodomain, disturbs the transcriptional network regulated by Pax6 in the developing lens and retina. Taken together, our data suggest that molecular properties of individual mouse Pax2 and Pax6 proteins are essential determinants of mouse eye development and cannot be substituted for by jellyfish PaxB which possesses elements of vertebrate Pax2 and Pax6.


Subject(s)
Eye Proteins/metabolism , Eye/metabolism , Homeodomain Proteins/metabolism , Otx Transcription Factors/metabolism , PAX2 Transcription Factor/metabolism , Paired Box Transcription Factors/metabolism , Repressor Proteins/metabolism , Scyphozoa/metabolism , Animals , Down-Regulation , Embryo, Mammalian/embryology , Embryo, Mammalian/metabolism , Eye/embryology , Eye Proteins/genetics , Gene Expression Regulation, Developmental , Homeodomain Proteins/genetics , Mice , Mice, Inbred C57BL , Mice, Transgenic , Otx Transcription Factors/genetics , PAX2 Transcription Factor/genetics , PAX6 Transcription Factor , Paired Box Transcription Factors/genetics , Phenotype , Repressor Proteins/genetics , Scyphozoa/genetics
10.
Invest Ophthalmol Vis Sci ; 50(9): 4155-61, 2009 Sep.
Article in English | MEDLINE | ID: mdl-19387067

ABSTRACT

PURPOSE: Klf4, one of the highly expressed transcription factors in the mouse cornea, plays an important role in maturation and maintenance of the ocular surface. In this study, the structure and proteoglycan composition of the Klf4 conditional null (Klf4CN) corneal stroma was investigated, to further characterize the previously reported Klf4CN stromal edema. METHODS: Collagen fibril spacing and diameter were calculated from scattering intensity profiles from small angle synchrotron x-ray scattering patterns obtained across the cornea along a vertical meridian at 0.5-mm intervals. Collagen fibril organization and proteoglycans were visualized by electron microscopy (EM), with or without the cationic dye cuprolinic blue. Proteoglycans and glycosaminoglycans were further analyzed by fluorophore-assisted carbohydrate electrophoresis (FACE) and immunoblot analysis. Q-RT-PCR was used to measure the transcript levels. RESULTS: In the central cornea, the average collagen interfibrillar Bragg spacing increased from 44.5 nm (SD +/-1.8) in wild-type to 66.5 nm (SD +/-2.3) in Klf4CN, as measured by x-ray scattering and confirmed by EM. Mean collagen fibril diameter increased from 32 nm (SD +/-0.4) in wild-type to 42.3 nm (SD +/-4.8) in Klf4CN corneal stroma. Downregulation of proteoglycans detected by EM in the Klf4CN stroma was confirmed by FACE and immunoblot analysis. Q-RT-PCR showed that, whereas the Klf4CN corneal proteoglycan transcript levels remained unchanged, matrix metalloproteinase (MMP) transcript levels were significantly upregulated. CONCLUSIONS: The Klf4CN corneal stromal edema is characterized by increased collagen interfibrillar spacing and increased diameter of individual fibrils. The stroma also exhibits reduced interfibrillar proteoglycans throughout, which is possibly caused by increased expression of MMPs.


Subject(s)
Collagen/metabolism , Corneal Edema/metabolism , Corneal Stroma/metabolism , Gene Expression Regulation/physiology , Kruppel-Like Transcription Factors/genetics , Proteoglycans/metabolism , Animals , Collagen/ultrastructure , Corneal Edema/genetics , Corneal Edema/pathology , Corneal Stroma/ultrastructure , Down-Regulation , Gene Deletion , Immunoblotting , Kruppel-Like Factor 4 , Mice , Microscopy, Electron , Proteoglycans/ultrastructure , Reverse Transcriptase Polymerase Chain Reaction , X-Ray Diffraction , Zinc Fingers/physiology
11.
Proc Natl Acad Sci U S A ; 105(26): 8989-93, 2008 Jul 01.
Article in English | MEDLINE | ID: mdl-18577593

ABSTRACT

Animal eyes are morphologically diverse. Their assembly, however, always relies on the same basic principle, i.e., photoreceptors located in the vicinity of dark shielding pigment. Cnidaria as the likely sister group to the Bilateria are the earliest branching phylum with a well developed visual system. Here, we show that camera-type eyes of the cubozoan jellyfish, Tripedalia cystophora, use genetic building blocks typical of vertebrate eyes, namely, a ciliary phototransduction cascade and melanogenic pathway. Our findings indicative of parallelism provide an insight into eye evolution. Combined, the available data favor the possibility that vertebrate and cubozoan eyes arose by independent recruitment of orthologous genes during evolution.


Subject(s)
Cubozoa/growth & development , Eye/growth & development , Vertebrates/growth & development , Animals , COS Cells , Chlorocebus aethiops , Cilia/metabolism , Cilia/ultrastructure , Crystallins/metabolism , Eye/cytology , Eye/ultrastructure , Gene Expression Regulation , Lens, Crystalline/metabolism , Melanins/metabolism , Microphthalmia-Associated Transcription Factor/genetics , Microphthalmia-Associated Transcription Factor/metabolism , Models, Biological , Molecular Sequence Data , Photoreceptor Cells, Invertebrate/cytology , Photoreceptor Cells, Invertebrate/metabolism , Photoreceptor Cells, Invertebrate/ultrastructure , Pigmentation , RNA, Messenger , Rod Opsins/metabolism , Sequence Homology, Nucleic Acid , Vision, Ocular/genetics
12.
Invest Ophthalmol Vis Sci ; 49(8): 3360-70, 2008 Aug.
Article in English | MEDLINE | ID: mdl-18469187

ABSTRACT

PURPOSE: Krüppel-like factor 4 (Klf4) plays a crucial role in the development and maintenance of the mouse cornea. In the current study, wild-type (WT) and Klf4-conditional null (Klf4CN) corneal gene expression patterns were examined, to gain understanding of the molecular basis of the Klf4CN corneal phenotype. METHODS: Expression of more than 22,000 genes in 10 WT and Klf4CN corneas was compared by microarrays, analyzed using BRB ArrayTools (National Cancer Institute, Bethesda, MD) and validated by Q-RT-PCR. Transient cotransfections were used to test whether Klf4 activates the aquaporin-3, Aldh3a1, and TKT promoters. RESULTS: Scatterplot analysis identified 740 and 529 genes up- and downregulated by more than twofold, respectively, in the Klf4CN corneas. Cell cycle activators were upregulated, whereas the inhibitors were downregulated, consistent with the increased Klf4CN corneal epithelial cell proliferation. Desmosomal components were downregulated, consistent with the Klf4CN corneal epithelial fragility. Downregulation of aquaporin-3, detected by microarray, was confirmed by immunoblot and immunohistochemistry. Aquaporin-3 promoter activity was stimulated 7- to 10-fold by cotransfection with pCI-Klf4. The corneal crystallins Aldh3A1 and TKT were downregulated in the Klf4CN cornea, and their respective promoter activities were upregulated 16- and 9-fold by pCI-Klf4 in cotransfections. The expression of epidermal keratinocyte differentiation markers was affected in the Klf4CN cornea. Although the cornea-specific keratin-12 was downregulated, most other keratins were upregulated, suggesting hyperkeratosis. CONCLUSIONS: Functionally diverse candidate Klf4 target genes were identified, revealing the molecular basis of the diverse aspects of the Klf4CN corneal phenotype. These results establish Klf4 as an important node in the genetic network of transcription factors regulating the corneal homeostasis.


Subject(s)
Cornea/metabolism , Gene Expression Regulation/physiology , Kruppel-Like Transcription Factors/genetics , Aldehyde Dehydrogenase/genetics , Aldehyde Dehydrogenase/metabolism , Animals , Aquaporin 3/genetics , Aquaporin 3/metabolism , Cell Culture Techniques , Cell Cycle/genetics , Epithelium, Corneal/metabolism , Female , Gene Expression Profiling , Immunoblotting , Immunohistochemistry , Kruppel-Like Factor 4 , Male , Mice , Microscopy, Fluorescence , Oligonucleotide Array Sequence Analysis , Reverse Transcriptase Polymerase Chain Reaction , Transfection , Transketolase/genetics , Transketolase/metabolism , Up-Regulation
13.
Invest Ophthalmol Vis Sci ; 49(5): 1814-26, 2008 May.
Article in English | MEDLINE | ID: mdl-18436815

ABSTRACT

PURPOSE: Aldehyde dehydrogenase 3a1 (Aldh3a1) represents approximately 50% of the water-soluble protein of the mouse corneal epithelial cells and thus, by analogy with the abundant lens crystallins, is considered a corneal crystallin. This study was conducted to examine the developmental pattern and transcriptional activation of Aldh3a1 gene expression in the mouse cornea. METHODS: Aldh3a1 mRNA and protein were analyzed by quantitative (Q)-PCR and Western immunoblot analysis. Functional promoter analysis was examined by cotransfecting plasmids containing variable portions of the Aldh3a1 promoter fused to the luciferase reporter gene into COS-7 cells with selected transcription factors. Transcription factor binding sites were identified by electrophoretic mobility shift assays (EMSA) and chromatin immunoprecipitation assays (ChIP). In situ hybridization and immunohistochemistry were used to assess expression of Aldh3a1, Pax6, and Oct1 in the cornea. RESULTS: Aldh3a1 expression is temporally regulated in the cornea beginning at birth and increasing 100-fold by 6 weeks of age. Pax6, Oct1, and p300 synergistically activate the Aldh3a1 promoter approximately 116-fold. One Pax6 and two Oct1 binding sites were identified in vitro and in vivo in the Aldh3a1 promoter fragment analyzed. Pax6 and Oct1 are both present in the nuclei of corneal epithelial cells of the 6-week-old mouse. Finally, a reduction of Aldh3a1 correlated with reduced Pax6 in the corneas of heterozygous Small eye Pax6(+/-) mice. CONCLUSIONS: Pax6, Oct1, and p300 activate gene expression of the corneal crystallin Aldh3a1 in the mouse. These transcription factors are also implicated in the high expression of crystallin genes in the lens, consistent with the "refracton hypothesis" unifying many aspects of the lens and cornea.


Subject(s)
Aldehyde Dehydrogenase/genetics , Cornea/growth & development , Crystallins/genetics , E1A-Associated p300 Protein/physiology , Eye Proteins/physiology , Gene Expression Regulation, Developmental/physiology , Homeodomain Proteins/physiology , Organic Cation Transporter 1/physiology , Paired Box Transcription Factors/physiology , Repressor Proteins/physiology , Animals , Blotting, Western , COS Cells , Chlorocebus aethiops , Cornea/metabolism , Electrophoretic Mobility Shift Assay , Fluorescent Antibody Technique, Indirect , In Situ Hybridization , Mice , Mice, Inbred C57BL , Microscopy, Fluorescence , PAX6 Transcription Factor , Polymerase Chain Reaction , RNA, Messenger/metabolism , Transcriptional Activation , Transfection
14.
Evol Dev ; 10(1): 52-61, 2008.
Article in English | MEDLINE | ID: mdl-18184357

ABSTRACT

Cnidaria is the earliest-branching metazoan phylum containing a well-developed, lens-containing visual system located on specialized sensory structures called rhopalia. Each rhopalium in a cubozoan jellyfish Tripedalia cystophora has a large and a small complex, camera-type eye with a cellular lens containing distinct families of crystallins. Here, we have characterized J2-crystallin and its gene in T. cystophora. The J2-crystallin gene is composed of a single exon and encodes a 157-amino acid cytoplasmic protein with no apparent homology to known proteins from other species. The non-lens expression of J2-crystallin suggests nonoptical as well as crystallin functions consistent with the gene-sharing strategy that has been used during evolution of lens crystallins in other invertebrates and vertebrates. Although nonfunctional in transfected mammalian lens cells, the J2-crystallin promoter is activated by the jellyfish paired domain transcription factor PaxB in co-transfection tests via binding to three paired domain sites. PaxB paired domain-binding sites were also identified in the PaxB-regulated promoters of the J1A- and J1B-crystallin genes, which are not homologous to the J2-crystallin gene. Taken together with previous studies on the regulation of the diverse crystallin genes, the present report strongly supports the idea that crystallin recruitment of multifunctional proteins was driven by convergent changes involving Pax (as well as other transcription factors) in the promoters of nonhomologous genes within and between species as well as within gene families.


Subject(s)
Crystallins/metabolism , Cubozoa/metabolism , Evolution, Molecular , Paired Box Transcription Factors/metabolism , Promoter Regions, Genetic , Animals , Base Sequence , Binding Sites , COS Cells , Cell Line , Chlorocebus aethiops , Cloning, Molecular , Crystallins/chemistry , Crystallins/genetics , Cubozoa/genetics , Cytoplasm/metabolism , Exons , Gene Expression Regulation , Humans , Lens, Crystalline/metabolism , Molecular Sequence Data , Paired Box Transcription Factors/genetics
16.
Int J Dev Biol ; 51(8): 689-700, 2007.
Article in English | MEDLINE | ID: mdl-17939115

ABSTRACT

The closely linked (863 bp), divergently arranged mouse myotonic dystrophy kinase binding protein (Mkbp)/HspB2 and small heat shock protein (shsp)/alphaB-crystallin genes have different patterns of tissue-specific expression. We showed previously that an intergenic enhancing region (-436/-257 relative to alphaB-crystallin transcription start site) selectively activates the alphaB-crystallin promoter in an orientation-dependent manner (Swamynathan, S.K. and J. Piatigorsky 2002. J. Biol. Chem. 277:49700-6). Here we show that cis-elements alphaBE1 (-420/-396) and alphaBE3 (-320/-300) functionally interact with glucocorticoid receptor (GR) and Sp1, respectively, both in vitro and in vivo. alphaBE1:GR regulates both the HspB2 and alphaB-crystallin promoters, while alphaBE3:Sp1 selectively regulates the alphaB-crystallin promoter, as judged by mutagenesis and co-transfection tests. Enhancer blocking assays indicate that the -836/-622 fragment can act as a negative regulator in transfection tests, raising the possibility that it contributes to the differential expression of the proximal HspB2 promoter and distal alphaB-crystallin promoter. Finally, experiments utilizing transiently transfected cells and transgenic mice show that two conserved E-box elements (-726/-721 and -702/-697) bind nuclear proteins and differentially regulate the HspB2 and alphaB-crystallin promoters in a tissue-specific manner. Taken together, our results indicate that the linked, differentially expressed HspB2 and alphaB-crystallin genes have evolved shared and promoter-preferred cis-control elements within the intergenic sequence. The context-dependency of cis-elements provides multiple opportunities for evolutionary novelty by small sequence changes.


Subject(s)
Gene Expression Regulation , Heat-Shock Proteins/biosynthesis , Heat-Shock Proteins/genetics , Promoter Regions, Genetic , alpha-Crystallin B Chain/biosynthesis , alpha-Crystallin B Chain/genetics , Animals , Base Sequence , Chickens , DNA Mutational Analysis , HSP27 Heat-Shock Proteins , Humans , K562 Cells , Mice , Molecular Sequence Data , Mutagenesis , Sp1 Transcription Factor/metabolism , Tissue Distribution , Transcription Factors/metabolism
17.
FASEB J ; 21(12): 3318-28, 2007 Oct.
Article in English | MEDLINE | ID: mdl-17548429

ABSTRACT

We have previously identified a gelsolin-like protein (C/L-gelsolin) as a corneal crystallin in zebrafish. Here we show by phylogenetic analysis that there are at least six genes encoding gelsolin-like proteins based on their gelsolin domains in zebrafish: gsna and gsnb group with the vertebrate gelsolin gene, scina and scinb group with the scinderin (adseverin) gene, and scinla (C/L-gelsolin) and scinlb are novel scinderin-like genes. RT-PCR showed that scinla, scinlb, and gsnb are preferentially expressed in the adult cornea whereas gsna is expressed to a similar extent in cornea, lens, brain, and heart; scina and scinb expression were detectable only in whole zebrafish and not in these adult tissues. Quantitative RT-PCR and 2-dimensional polyacrylamide gel electrophoresis followed by MALDI/TOF mass spectroscopy confirmed high expression of beta-actin and scinla, moderate expression of scinlb, and very low expression of gsna and gsnb in the cornea. Finally, transgenic zebrafish carrying a green fluorescent protein reporter transgene driven by a 4 kb scinla promoter fragment showed expression in the cornea, snout, dorsal fin, and tail fin of 3-day-old zebrafish larvae. Our data suggest that scinla and scinlb are diverged paralogs of the vertebrate scinderin gene and show that scinla encodes the zebrafish corneal crystallin previously called C/L-gelsolin.


Subject(s)
Cornea/chemistry , Crystallins/genetics , Gelsolin/genetics , Gene Duplication , Zebrafish Proteins/metabolism , Zebrafish/genetics , Animals , Animals, Genetically Modified , Crystallins/classification , Crystallins/metabolism , Gelsolin/classification , Gelsolin/metabolism , Humans , Microinjections , Molecular Sequence Data , Multigene Family , Phylogeny , Promoter Regions, Genetic , Reverse Transcriptase Polymerase Chain Reaction , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Tissue Distribution , Zebrafish/anatomy & histology , Zebrafish/embryology , Zebrafish Proteins/chemistry , Zebrafish Proteins/genetics
18.
J Biol Chem ; 282(35): 25668-76, 2007 Aug 31.
Article in English | MEDLINE | ID: mdl-17567582

ABSTRACT

ALDH3A1 (aldehyde dehydrogenase 3A1) is abundant in the mouse cornea but undetectable in the lens, and ALDH1A1 is present at lower (catalytic) levels in the cornea and lens. To test the hypothesis that ALDH3A1 and ALDH1A1 protect the anterior segment of the eye against environmentally induced oxidative damage, Aldh1a1(-/-)/Aldh3a1(-/-) double knock-out and Aldh1a1(-/-) and Aldh3a1(-/-) single knock-out mice were evaluated for biochemical changes and cataract formation (lens opacification). The Aldh1a1/Aldh3a1- and Aldh3a1-null mice develop cataracts in the anterior and posterior subcapsular regions as well as punctate opacities in the cortex by 1 month of age. The Aldh1a1-null mice also develop cataracts later in life (6-9 months of age). One- to three-month-old Aldh-null mice exposed to UVB exhibited accelerated anterior lens subcapsular opacification, which was more pronounced in Aldh3a1(-/-) and Aldh3a1(-/-)/Aldh1a1(-/-) mice compared with Aldh1a1(-/-) and wild type animals. Cataract formation was associated with decreased proteasomal activity, increased protein oxidation, increased GSH levels, and increased levels of 4-hydroxy-2-nonenal- and malondialdehyde-protein adducts. In conclusion, these findings support the hypothesis that corneal ALDH3A1 and lens ALDH1A1 protect the eye against cataract formation via nonenzymatic (light filtering) and enzymatic (detoxification) functions.


Subject(s)
Aldehyde Dehydrogenase/metabolism , Cataract/enzymology , Cornea/enzymology , Eye Proteins/metabolism , Lens, Crystalline/enzymology , Oxidative Stress , Aging/genetics , Aging/metabolism , Aging/pathology , Aldehyde Dehydrogenase/deficiency , Aldehyde Dehydrogenase 1 Family , Animals , Cataract/genetics , Cataract/pathology , Cornea/pathology , Eye Proteins/genetics , Glutathione/metabolism , Lens, Crystalline/pathology , Mice , Mice, Knockout , Oxidation-Reduction/radiation effects , Oxidative Stress/drug effects , Oxidative Stress/genetics , Phenotype , Proteasome Endopeptidase Complex/metabolism , Retinal Dehydrogenase , Ultraviolet Rays/adverse effects
19.
Genesis ; 45(4): 157-68, 2007 Apr.
Article in English | MEDLINE | ID: mdl-17410548

ABSTRACT

beta-Catenin plays a key role in cadherin-mediated cell adhesion as well as in canonical Wnt signaling. To study the role of beta-catenin during eye development, we used conditional Cre/loxP system in mouse to inactivate beta-catenin in developing lens and retina. Inactivation of beta-catenin does not suppress lens fate, but instead results in abnormal morphogenesis of the lens. Using BAT-gal reporter mice, we show that beta-catenin-mediated Wnt signaling is notably absent from lens and neuroretina throughout eye development. The observed defect is therefore likely due to the cytoskeletal role of beta-catenin, and is accompanied by impaired epithelial cell adhesion. In contrast, inactivation of beta-catenin in the nasal ectoderm, an area with active Wnt signaling, results in formation of crystallin-positive ectopic lentoid bodies. These data suggest that, outside of the normal lens, beta-catenin functions as a coactivator of canonical Wnt signaling to suppress lens fate.


Subject(s)
Choristoma/genetics , Lens, Crystalline/embryology , Morphogenesis/genetics , Nose Diseases/genetics , beta Catenin/genetics , beta Catenin/physiology , Animals , Cell Adhesion , Choristoma/congenital , Eye/embryology , Lens, Crystalline/cytology , Mice , Mice, Transgenic , Nose Diseases/congenital , Signal Transduction/genetics , Wnt Proteins/physiology
20.
Proc Natl Acad Sci U S A ; 104(8): 2608-13, 2007 Feb 20.
Article in English | MEDLINE | ID: mdl-17293452

ABSTRACT

The alphaB-crystallin and HspB2 genes are located approximately 0.9 kb apart in a head-to-head arrangement in mammals. Previous experiments have shown that a truncated -668/+45 alphaB-crystallin enhancer/promoter fragment from blind mole rats (Spalax ehrenbergi), which have nonfunctional lenses, lacks lens activity and has enhanced muscle activity in transgenic mice. Here we show that the full-length mole rat alphaB-crystallin intergenic region behaves similarly in transgenic mice. A two-nucleotide mutation ((-273)CA-->G) in the mouse alphaB-crystallin enhancer/promoter fragment mimicking the wild-type mole rat sequence functionally converted the mouse promoter fragment to that of the wild-type mole rat promoter when tested in transgenic mice. The reciprocal mutation in the mole rat promoter fragment ((-272)G-->CA) did not affect its activity. Oligonucleotides from the wild-type mouse and mole rat alphaB-crystallin promoter region under study formed distinct complexes with nuclear proteins from cultured cells. The mouse mutant sequence lost binding ability, whereas the mutated mole rat sequence gained the ability to form a complex similar in size to that of the wild-type mouse oligonucleotide. Our data support the idea that blind mole rats' alphaB-crystallin promoter activity was modified during the evolution of subterranean life and shows that tissue-specific promoter activity can be modulated by changing as few as two apparently neutral nucleotides in the mouse alphaB-crystallin enhancer region, implying the importance of the context of regulatory sequences for promoter activity.


Subject(s)
Mutation/genetics , Nucleotides/genetics , Organ Specificity , Promoter Regions, Genetic/genetics , Spalax/metabolism , alpha-Crystallin B Chain/genetics , Amino Acid Sequence , Animals , Base Sequence , Electrophoretic Mobility Shift Assay , Mice , Mice, Transgenic , Molecular Sequence Data , Mutagenesis , alpha-Crystallin B Chain/chemistry
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