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1.
J Bacteriol ; 190(8): 2759-66, 2008 Apr.
Article in English | MEDLINE | ID: mdl-18263718

ABSTRACT

Pseudomonas chlororaphis strain 30-84 is a plant-beneficial bacterium that is able to control take-all disease of wheat caused by the fungal pathogen Gaeumannomyces graminis var. tritici. The production of phenazines (PZs) by strain 30-84 is the primary mechanism of pathogen inhibition and contributes to the persistence of strain 30-84 in the rhizosphere. PZ production is regulated in part by the PhzR/PhzI quorum-sensing (QS) system. Previous flow cell analyses demonstrated that QS and PZs are involved in biofilm formation in P. chlororaphis (V. S. R. K. Maddula, Z. Zhang, E. A. Pierson, and L. S. Pierson III, Microb. Ecol. 52:289-301, 2006). P. chlororaphis produces mainly two PZs, phenazine-1-carboxylic acid (PCA) and 2-hydroxy-PCA (2-OH-PCA). In the present study, we examined the effect of altering the ratio of PZs produced by P. chlororaphis on biofilm formation and pathogen inhibition. As part of this study, we generated derivatives of strain 30-84 that produced only PCA or overproduced 2-OH-PCA. Using flow cell assays, we found that these PZ-altered derivatives of strain 30-84 differed from the wild type in initial attachment, mature biofilm architecture, and dispersal from biofilms. For example, increased 2-OH-PCA production promoted initial attachment and altered the three-dimensional structure of the mature biofilm relative to the wild type. Additionally, both alterations promoted thicker biofilm development and lowered dispersal rates compared to the wild type. The PZ-altered derivatives of strain 30-84 also differed in their ability to inhibit the fungal pathogen G. graminis var. tritici. Loss of 2-OH-PCA resulted in a significant reduction in the inhibition of G. graminis var. tritici. Our findings suggest that alterations in the ratios of antibiotic secondary metabolites synthesized by an organism may have complex and wide-ranging effects on its biology.


Subject(s)
Antibiosis , Ascomycota/growth & development , Biofilms/growth & development , Pseudomonas/physiology , Antifungal Agents/metabolism , Antifungal Agents/pharmacology , Gene Deletion , Gene Dosage , Molecular Structure , Mycelium/growth & development , Phenazines/metabolism
2.
Microb Ecol ; 52(2): 289-301, 2006 Aug.
Article in English | MEDLINE | ID: mdl-16897305

ABSTRACT

The biological control bacterium Pseudomonas chlororaphis (aureofaciens) strain 30-84 employs two quorum sensing (QS) systems: PhzR/PhzI regulates the production of the antibiotics phenazine-1-carboxylic acid, 2-hydroxy-phenazine-1-carboxylic acid, and 2-hydroxy-phenazine, whereas CsaR/CsaI regulates currently unknown aspects of the cell surface. Previously characterized derivatives of strain 30-84 with mutations in each QS system and in the phenazine biosynthetic genes were screened for their ability to form surface-attached biofilm populations in vitro, using microtiter plate and flow cell biofilm assays, and on seeds and roots. Results from in vitro, seed, and root studies demonstrated that the PhzR/PhzI and the CsaR/CsaI QS regulatory systems contribute to the establishment of biofilms, with mutations in PhzR/PhzI having a significantly greater effect than mutations in CsaR/CsaI. Interestingly, phenazine antibiotic production was necessary for biofilm formation to the same extent as the PhzR/PhzI QS system, suggesting the loss of phenazines was responsible for the majority of the biofilm defect in these mutants. In vitro analysis indicated that genetic complementation or AHL addition to the growth medium restored the ability of the AHL synthase phzI mutant to form biofilms. However, only phenazine addition or genetic complementation of the phenazine biosynthetic mutation in trans restored biofilm formation by mutants defective in the transcriptional activator phzR or the phzB structural mutant. QS and phenazine production were also involved in the establishment of surface-attached populations on wheat seeds and plant roots, and, as observed in vitro, the addition of AHL extracts restored the ability of phzI mutants, but not phzR mutants, to form surface attached populations on seeds. Similarly, the presence of the wild type in mixtures with the mutants restored the ability of the mutants to colonize wheat roots, demonstrating that AHL and/or phenazine production by the wild-type population could complement the AHL- and phenazine-deficient mutants in situ. Together, these data demonstrate that both QS systems are involved in the formation of surface-attached populations required for biofilm formation by P. chlororaphis strain 30-84, and indicate a new role for phenazine antibiotics in rhizosphere community development beyond inhibition of other plant-associated microorganisms.


Subject(s)
Biofilms/growth & development , Phenazines/metabolism , Pseudomonas/physiology , Signal Transduction , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Mutation , Plant Roots/microbiology , Pseudomonas/genetics , Pseudomonas/metabolism , Seeds/microbiology , Trans-Activators/genetics , Trans-Activators/metabolism , Triticum/embryology , Triticum/microbiology
3.
Appl Environ Microbiol ; 70(5): 3103-9, 2004 May.
Article in English | MEDLINE | ID: mdl-15128573

ABSTRACT

Phenazine antibiotic production in the biological control bacterium Pseudomonas aureofaciens 30-84 is regulated in part via the PhzR/PhzI N-acyl homoserine lactone (AHL) system. Previous work showed that a subpopulation of the wheat rhizosphere community positively affected phenazine gene expression in strain 30-84 via AHL signals (E. A. Pierson, D. W. Wood, J. A. Cannon, F. M. Blachere, and L. S. Pierson III, Mol. Plant-Microbe Interact. 11:1078-1084, 1998). In the present work, a second subpopulation, one that negatively affected phenazine gene expression, was identified from this rhizosphere community. Strain 30-84 grown in conditioned medium (CM) from several strains produced lower levels of phenazines (1.5- to 9.3-fold) than control when grown in CM from the strain 30-84I(1)/I(2). Growth of the phzB::lacZ reporter strain 30-84Z in this CM resulted in decreased lacZ expression (4.3- to 9.2-fold) compared to growth of the control strain in CM, indicating that inhibition of phzB occurred at the level of gene expression. Preliminary chemical and biological characterizations suggested that these signals, unlike other identified negative signals, were not extractable in ethyl acetate. Introduction of extra copies of phzR and phzI, but not phzI alone, in trans into strain 30-84Z reduced the negative effect on phzB::lacZ expression. The presence of negative-signal-producing strains in a mixture with strain 30-84 reduced strain 30-84's ability to inhibit the take-all disease pathogen in vitro. Together, the results from the previous work on the positive-signal subpopulation and the present work on the negative-signal subpopulation suggest that cross-communication among members of the rhizosphere community and strain 30-84 may control secondary metabolite production and pathogen inhibition.


Subject(s)
Bacteria/growth & development , Phenazines/metabolism , Plant Roots/microbiology , Pseudomonas/growth & development , Signal Transduction , Soil Microbiology , Triticum/microbiology , Bacteria/metabolism , Bacterial Proteins/metabolism , Culture Media, Conditioned/pharmacology , Gene Expression Regulation, Bacterial/drug effects , Pest Control, Biological , Plant Diseases/microbiology , Pseudomonas/metabolism
4.
Appl Environ Microbiol ; 67(9): 4305-15, 2001 Sep.
Article in English | MEDLINE | ID: mdl-11526037

ABSTRACT

The root-associated biological control bacterium Pseudomonas aureofaciens 30-84 produces a range of exoproducts, including protease and phenazines. Phenazine antibiotic biosynthesis by phzXYFABCD is regulated in part by the PhzR-PhzI quorum-sensing system. Mutants defective in phzR or phzI produce very low levels of phenazines but wild-type levels of exoprotease. In the present study, a second genomic region of strain 30-84 was identified that, when present in trans, increased beta-galactosidase activity in a genomic phzB::lacZ reporter and partially restored phenazine production to a phzR mutant. Sequence analysis identified two adjacent genes, csaR and csaI, that encode members of the LuxR-LuxI family of regulatory proteins. No putative promoter region is present upstream of the csaI start codon and no lux box-like element was found in either the csaR promoter or the 30-bp intergenic region between csaR and csaI. Both the PhzR-PhzI and CsaR-CsaI systems are regulated by the GacS-GacA two-component regulatory system. In contrast to the multicopy effects of csaR and csaI in trans, a genomic csaR mutant (30-84R2) and a csaI mutant (30-84I2) did not exhibit altered phenazine production in vitro or in situ, indicating that the CsaR-CsaI system is not involved in phenazine regulation in strain 30-84. Both mutants also produced wild-type levels of protease. However, disruption of both csaI and phzI or both csaR and phzR eliminated both phenazine and protease production completely. Thus, the two quorum-sensing systems do not interact for phenazine regulation but do interact for protease regulation. Additionally, the CsaI N-acylhomoserine lactone (AHL) signal was not recognized by the phenazine AHL reporter 30-84I/Z but was recognized by the AHL reporters Chromobacterium violaceum CV026 and Agrobacterium tumefaciens A136(pCF240). Inactivation of csaR resulted in a smooth mucoid colony phenotype and formation of cell aggregates in broth, suggesting that CsaR is involved in regulating biosynthesis of cell surface components. Strain 30-84I/I2 exhibited mucoid colony and clumping phenotypes similar to those of 30-84R2. Both phenotypes were reversed by complementation with csaR-csaI or by the addition of the CsaI AHL signal. Both quorum-sensing systems play a role in colonization by strain 30-84. Whereas loss of PhzR resulted in a 6.6-fold decrease in colonization by strain 30-84 on wheat roots in natural soil, a phzR csaR double mutant resulted in a 47-fold decrease. These data suggest that gene(s) regulated by the CsaR-CsaI system also plays a role in the rhizosphere competence of P. aureofaciens 30-84.


Subject(s)
4-Butyrolactone/analogs & derivatives , Anti-Bacterial Agents/biosynthesis , Exopeptidases/biosynthesis , Gene Expression Regulation, Bacterial , Phenazines/metabolism , Pseudomonas/genetics , Pseudomonas/physiology , Signal Transduction , Trans-Activators , 4-Butyrolactone/metabolism , Amino Acid Sequence , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Molecular Sequence Data , Plant Roots/microbiology , Pseudomonas/growth & development , Pseudomonas/metabolism , Sequence Analysis, DNA , Surface Properties , Triticum/microbiology
6.
Appl Environ Microbiol ; 65(6): 2294-9, 1999 Jun.
Article in English | MEDLINE | ID: mdl-10347004

ABSTRACT

Production of phenazine antibiotics by the biological control bacterium Pseudomonas aureofaciens 30-84 is regulated in part by the PhzI/PhzR N-acyl-homoserine lactone (AHL) response system (L. S. Pierson III, V. D. Keppenne, and D. W. Wood, J. Bacteriol. 176:3966-3974, 1994; D. W. Wood and L. S. Pierson III, Gene 168:49-53, 1996). Two mutants, 30-84W and 30-84.A2, were isolated and were found to be deficient in the production of phenazine, protease, hydrogen cyanide (HCN), and the AHL signal N-hexanoyl-homoserine lactone. These mutants were not complemented by phzI, phzR, or the phenazine biosynthetic genes (phzFABCD) (L. S. Pierson III, T. Gaffney, S. Lam, and F. Gong, FEMS Microbiol. Lett. 134:299-307, 1995). A 2.2-kb region of the 30-84 chromosome which fully restored production of all of these compounds in strain 30-84W was identified. Nucleotide sequence analysis of this region revealed a single open reading frame encoding a predicted 213-amino-acid protein which is very similar to the global response regulator GacA. Strain 30-84.A2 was not complemented by gacA or any cosmid from a genomic library of strain 30-84 but was complemented by gacS (formerly lemA) homologs from Pseudomonas fluorescens Pf-5 (N. Corbel and J. E. Loper, J. Bacteriol. 177:6230-6236, 1995) and Pseudomonas syringae pv. syringae B728a (E. M. Hrabek and D. K. Willis, J. Bacteriol. 174:3011-3020, 1992). Transcription of phzR was not altered in either mutant; however, phzI transcription was eliminated in strains 30-84W and 30-84.A2. These results indicated that the GacS/GacA two-component signal transduction system of P. aureofaciens 30-84 controls the production of AHL required for phenazine production by mediating the transcription of phzI. Addition of exogenous AHL did not complement either mutant for phenazine production, indicating that the GacS/GacA global regulatory system controls phenazine production at multiple levels. Our results reveal for the first time a mechanism by which a two-component regulatory system and an AHL-mediated regulatory system interact.


Subject(s)
4-Butyrolactone/analogs & derivatives , Gene Expression Regulation, Bacterial , Pseudomonas/genetics , Signal Transduction , Transcription, Genetic , 4-Butyrolactone/metabolism , Anti-Bacterial Agents/metabolism , Bacterial Proteins/genetics , DNA-Binding Proteins/genetics , Molecular Sequence Data , Phenazines/metabolism , Pseudomonas/growth & development , Pseudomonas/metabolism , Trans-Activators/genetics
7.
Annu Rev Phytopathol ; 36: 207-25, 1998.
Article in English | MEDLINE | ID: mdl-15012498

ABSTRACT

Many plant-associated bacteria produce and utilize diffusible N-acyl-homoserine lactones (AHLs) to regulate the expression of specific bacterial genes and operons. AHL-mediated regulation utilizes two genes that encode proteins similar to the LuxI/LuxR system originally studied in the marine symbiont Vibrio fischeri. The LuxI-type proteins are AHL synthases that assemble the diffusible AHL signal. The LuxR-type proteins are AHL-responsive transcriptional regulatory proteins. LuxR proteins control the transcription of specific bacterial genes in response to the levels of AHL signal. To date, AHL-mediated gene regulation has been identified in a broad range of gram-negative bacteria, most of which are host-associated. However, it seems unlikely that such a widely conserved regulatory mechanism would be limited only to host-microbe interactions. These signals probably play central roles in ecological interactions among organisms in microbial communities by affecting communication among bacterial populations as well as between bacterial populations and their eukaryotic hosts.

8.
J Bacteriol ; 179(24): 7663-70, 1997 Dec.
Article in English | MEDLINE | ID: mdl-9401023

ABSTRACT

Pseudomonas aureofaciens 30-84 is a soilborne bacterium that colonizes the wheat rhizosphere. This strain produces three phenazine antibiotics which suppress take-all disease of wheat by inhibition of the causative agent Gaeumannomyces graminis var. tritici. Phenazines also enhance survival of 30-84 within the wheat rhizosphere in competition with other organisms. Expression of the phenazine biosynthetic operon is controlled by the phzR/phzI N-acyl-homoserine lactone (AHL) response system (L. S. Pierson III et al., J. Bacterial 176:3966-3974, 1994; D. W. Wood and L. S. Pierson III, Gene 168:49-53, 1996). By using high-pressure liquid chromatography coupled with high-resolution mass spectrometry, the AHL produced by PhzI has now been identified as N-hexanoyl-homoserine lactone (HHL). In addition, the ability of HHL to serve as an interpopulation signal molecule in the wheat rhizosphere has been examined by using isogenic reporter strains. Disruption of phzI reduced expression of the phenazine biosynthetic operon 1,000-fold in the wheat rhizosphere. Coinoculation of an isogenic strain which produced the endogenous HHL signal restored phenazine gene expression in the phzI mutant to wild-type levels in situ. These results demonstrate that HHL is required for phenazine expression in situ and is an effective interpopulation signal molecule in the wheat rhizosphere.


Subject(s)
4-Butyrolactone/analogs & derivatives , Gene Expression Regulation, Bacterial , Phenazines/metabolism , Plant Roots/microbiology , Pseudomonas/genetics , 4-Butyrolactone/metabolism , Anti-Bacterial Agents/biosynthesis , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Cell Communication , Genetic Complementation Test , Soil Microbiology , Triticum/microbiology
9.
Plant Physiol ; 115(4): 1691-8, 1997 Dec.
Article in English | MEDLINE | ID: mdl-9414568

ABSTRACT

Reporter strains of soil-borne bacteria were used to test the hypothesis that chemicals released by root border cells can influence the expression of bacterial genes required for the establishment of plant-microbe associations. Promoters from genes known to be activated by plant factors included virE, required for Agrobacterium tumefaciens pathogenesis, and common nod genes from Rhizobium leguminosarum bv viciae and Rhizobium meliloti, required for nodulation of pea (Pisum sativum) and alfalfa (Medicago sativum), respectively. Also included was phzB, an autoinducible gene encoding the biosynthesis of antibiotics by Pseudomonas aureofaciens. The virE and nod genes were activated to different degrees, depending on the source of border cells, whereas phzB activity remained unaffected. The homologous interaction between R. leguminosarum bv viciae and its host, pea, was examined in detail. Nod gene induction by border cells was dosage dependent and responsive to environmental signals. The highest levels of gene induction by pea (but not alfalfa) border cells occurred at low temperatures, when little or no bacterial growth was detected. Detached border cells cultured in distilled water exhibited increased nod gene induction (ini) in response to signals from R. leguminosarum bv viciae.


Subject(s)
Agrobacterium tumefaciens/physiology , Gene Expression Regulation, Plant , Medicago sativa/physiology , Pisum sativum/physiology , Rhizobium leguminosarum/physiology , Sinorhizobium meliloti/physiology , Zea mays/physiology , Agrobacterium tumefaciens/genetics , Agrobacterium tumefaciens/pathogenicity , Cells, Cultured , Coculture Techniques , Genes, Reporter , Medicago sativa/cytology , Medicago sativa/microbiology , Pisum sativum/cytology , Pisum sativum/microbiology , Plant Roots , Rhizobium leguminosarum/genetics , Rhizobium leguminosarum/pathogenicity , Sinorhizobium meliloti/genetics , Sinorhizobium meliloti/pathogenicity , Species Specificity , Symbiosis , Transcriptional Activation , Zea mays/cytology , Zea mays/microbiology
10.
Gene ; 168(1): 49-53, 1996 Feb 02.
Article in English | MEDLINE | ID: mdl-8626064

ABSTRACT

The production of phenazine (Ph) antibiotics in Pseudomonas aureofaciens (Pau) 30-84 is positively regulated by PhzR, a protein belonging to the LuxR family of transcriptional activators. We have now identified phzI, a second gene required for PH production. The product of phzI is a member of the LuxI family of N-acyl-homoserine lactone (N-acyl-HSL) synthases. Inactivation of phzI results in the loss of Ph production in Pau 30-84. The presence of phzI in Escherichia coli is sufficient for the production of a diffusible signal which activates phzB expression in Pau 30-84 and traA expression in a N-acyl-HSL-dependent reporter strain of Agrobacterium tumefaciens. In addition, synthetic N-(3-oxohexanoyl)-L-HSL induces phzB expression in Pau 30-84. These results suggest that Pau 30-84 produces a N-acyl-HSL signal that regulates Ph production, and that phzI plays a central role in this signaling pathway.


Subject(s)
Anti-Bacterial Agents/biosynthesis , Bacterial Proteins/genetics , Genes, Regulator , Phenazines/metabolism , Pseudomonas/metabolism , 4-Butyrolactone/analogs & derivatives , 4-Butyrolactone/metabolism , 4-Butyrolactone/pharmacology , Anti-Bacterial Agents/pharmacology , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Bacterial Proteins/physiology , Base Sequence , Cell Division/genetics , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Escherichia coli/genetics , Escherichia coli/metabolism , Gene Expression/genetics , Genes, Bacterial , Molecular Sequence Data , Phenazines/pharmacology , Pheromones/pharmacology , Promoter Regions, Genetic/genetics , Pseudomonas/genetics , Recombinant Fusion Proteins/genetics , Restriction Mapping , Spectrophotometry , Trans-Activators/genetics , Trans-Activators/metabolism , Transcription Factors/metabolism , beta-Galactosidase/genetics , beta-Galactosidase/metabolism
11.
FEMS Microbiol Lett ; 134(2-3): 299-307, 1995 Dec 15.
Article in English | MEDLINE | ID: mdl-8586283

ABSTRACT

The DNA sequence of five contiguous open reading frames encoding enzymes for phenazine biosynthesis in the biological control bacterium. Pseudomonas aureofaciens 30-84 was determined. These open reading frames were named phzF, phzA, phzB, phzC and phzD. Protein PhzF is similar to 3-deoxy-D-arabino-heptulosonate-7-phosphate synthases of solanaceous plants. PhzA is similar to 2,3-dihydro-2,3-dihydroxybenzoate synthase (EntB) of Escherichia coli. PhzB shares similarity with both subunits of anthranilate synthase and the phzB open reading frame complemented an E. coli trpE mutant deficient in anthranilate synthase activity. Although phzC shares little similarity to known genes, its product is responsible for the conversion of phenazine-I-carboxylic acid to 2-hydroxy-phenazine-I-carboxylic acid. PhzD is similar to pyridoxamine phosphate oxidases. These results indicate that phenazine biosynthesis in P. aureofaciens shares similarities with the shikimic acid, enterochelin, and tryptophan biosynthetic pathways.


Subject(s)
Anti-Bacterial Agents/biosynthesis , Genes, Bacterial , Phenazines/metabolism , Pseudomonas/genetics , Pseudomonas/metabolism , Amino Acid Sequence , Anthranilate Synthase/genetics , Bacterial Proteins/genetics , DNA, Bacterial/genetics , Enterobactin/metabolism , Escherichia coli/enzymology , Escherichia coli/genetics , Molecular Sequence Data , Open Reading Frames , Restriction Mapping , Sequence Homology, Amino Acid , Shikimic Acid/metabolism , Tryptophan/biosynthesis
12.
J Bacteriol ; 176(13): 3966-74, 1994 Jul.
Article in English | MEDLINE | ID: mdl-8021179

ABSTRACT

We have identified a gene that acts in trans to activate the expression of the phenazine biosynthetic genes in the biological control organism Pseudomonas aureofaciens 30-84. This gene, phzR (phenazine regulator), is located upstream of and divergently transcribed from the phenazine biosynthetic genes. Thus, the phenazine biosynthetic locus consists of at least two divergently transcribed operons. A functional phzR gene is required for phenazine production. The nucleotide sequence of phzR revealed an open reading frame of 723 nucleotides encoding a protein of ca. 27 kDa. The predicted amino acid sequence of PhzR has homology with other bacterial positive transcriptional activators, including LasR of Pseudomonas aeruginosa, LuxR of Vibrio fischerii, and TraR of Agrobacterium tumefaciens. The addition of cell-free supernatants from late-exponential-phase cultures of strain 30-84 resulted in expression of a genomic phzB:lacZ reporter strain at a lower cell density than normal, indicating the possible presence of an autoinducer. These results indicate that PhzR is a member of a two-component sensor-regulator family with known or predicted carboxy-terminal DNA-binding domains which regulates gene expression in response to environmental and cell density signals.


Subject(s)
Anti-Bacterial Agents/biosynthesis , Bacterial Proteins , DNA-Binding Proteins/genetics , Gene Expression Regulation, Bacterial , Phenazines/metabolism , Pseudomonas/metabolism , Trans-Activators/genetics , Amino Acid Sequence , Base Sequence , Cloning, Molecular , DNA Mutational Analysis , Escherichia coli/genetics , Genes, Bacterial/genetics , Genes, Regulator/genetics , Molecular Sequence Data , Pseudomonas/growth & development , Recombinant Proteins/biosynthesis , Sequence Analysis, DNA , Sequence Deletion , Sequence Homology, Amino Acid , Transcriptional Activation
13.
Appl Environ Microbiol ; 58(8): 2616-24, 1992 Aug.
Article in English | MEDLINE | ID: mdl-1514808

ABSTRACT

Phenazine antibiotics produced by Pseudomonas fluorescens 2-79 and Pseudomonas aureofaciens 30-84, previously shown to be the principal factors enabling these bacteria to suppress take-all of wheat caused by Gaeumannomyces graminis var. tritici, also contribute to the ecological competence of these strains in soil and in the rhizosphere of wheat. Strains 2-79 and 30-84, their Tn5 mutants defective in phenazine production (Phz-), or the mutant strains genetically restored for phenazine production (Phz+) were introduced into Thatuna silt loam (TSL) or TSL amended with G. graminis var. tritici. Soils were planted with three or five successive 20-day plant-harvest cycles of wheat. Population sizes of Phz- derivatives declined more rapidly than did population sizes of the corresponding parental or restored Phz+ strains. Antibiotic biosynthesis was particularly critical to survival of these strains during the fourth and fifth cycles of wheat in the presence of G. graminis var. tritici and during all five cycles of wheat in the absence of take-all. In pasteurized TSL, a Phz- derivative of strain 30-84 colonized the rhizosphere of wheat to the same extent that the parental strain did. The results indicate that production of phenazine antibiotics by strains 2-79 and 30-84 can contribute to the ecological competence of these strains and that the reduced survival of the Phz- strains is due to a diminished ability to compete with the resident microflora.


Subject(s)
Anti-Bacterial Agents/biosynthesis , Ecology , Phenazines/metabolism , Pseudomonas/metabolism , Ascomycota/growth & development , Plasmids , Pseudomonas/genetics , Pseudomonas fluorescens/genetics , Pseudomonas fluorescens/metabolism , Soil Microbiology , Triticum/microbiology
14.
Mol Plant Microbe Interact ; 5(4): 330-9, 1992.
Article in English | MEDLINE | ID: mdl-1325219

ABSTRACT

Pseudomonas aureofaciens strain 30-84 suppresses take-all disease of wheat caused by Gaeumannomyces graminis var. tritici. Three antibiotics, phenazine-1-carboxylic acid, 2-hydroxyphenazine-1-carboxylic acid, and 2-hydroxyphenazine, were responsible for disease suppression. Tn5-induced mutants deficient in production of one or more of the antibiotics (Phz-) were significantly less suppressive than the parental strain. Cosmids pLSP259 and pLSP282 from a genomic library of strain 30-84 restored phenazine production and fungal inhibition to 10 different Phz- mutants. Sequences required for production of the phenazines were localized to a segment of approximately 2.8 kilobases that was present in both cosmids. Expression of this locus in Escherichia coli required the introduction of a functional promoter, was orientation-specific, and resulted in the production of all three phenazine antibiotics. These results strongly suggest that the cloned sequences encode a major portion of the phenazine biosynthetic pathway.


Subject(s)
Antifungal Agents/metabolism , Genes, Bacterial/genetics , Phenazines/metabolism , Pseudomonas/genetics , DNA Mutational Analysis , DNA Transposable Elements , Escherichia coli/genetics , Mutagenesis, Insertional , Phenazines/isolation & purification , Phenazines/pharmacology , Plant Diseases/microbiology , Triticum/microbiology
15.
Appl Environ Microbiol ; 56(4): 908-12, 1990 Apr.
Article in English | MEDLINE | ID: mdl-16348176

ABSTRACT

Pseudomonas fluorescens 2-79 and P. aureofaciens 30-84 produce the antibiotic phenazine-1-carboxylic acid and suppress take-all, an important root disease of wheat caused by Gaeumannomyces graminis var. tritici. To determine whether the antibiotic is produced in situ, wheat seeds were treated with strain 2-79 or 30-84 or with phenazine-nonproducing mutants or were left untreated and then were sown in natural or steamed soil in the field or growth chamber. The antibiotic was isolated only from roots of wheat colonized by strain 2-79 or 30-84 in both growth chamber and field studies. No antibiotic was recovered from the roots of seedlings grown from seeds treated with phenazine-nonproducing mutants or left untreated. In natural soils, comparable amounts of antibiotic (27 to 43 ng/g of root with adhering soil) were recovered from roots colonized by strain 2-79 whether or not the pathogen was present. Roots of plants grown in steamed soil yielded larger bacterial populations and more antibiotic than roots from natural soils. In steamed and natural soils, roots from which the antibiotic was recovered had significantly less disease than roots with no antibiotic, indicating that suppression of take-all is related directly to the presence of the antibiotic in the rhizosphere.

16.
J Mol Biol ; 196(3): 487-96, 1987 Aug 05.
Article in English | MEDLINE | ID: mdl-3119856

ABSTRACT

We determined the DNA sequences of regions essential for bacteriophage P4 integration. A 20 base-pair core sequence in both phage (P4attP) and host (P4attB) attachment regions contains the recombination site. In P4attP this sequence is flanked by five repeated sequences. A 1.3 x 10(3) base open reading frame codes for P4 integrase. Two possible promoters are upstream from P4int. One would be recognized by Escherichia coli RNA polymerase and may be repressed by integrase protein. The second would be recognized by RNA polymerase modified after infection by a P4 helper phage, P2. The P4attB core sequence is the 3' end of a leucine tRNA gene. Downstream from this tRNA in E. coli K-12 is a region homologous to P4int that may be part of a cryptic prophage.


Subject(s)
Bacteriophages/genetics , DNA, Recombinant , DNA, Viral/genetics , Escherichia coli/genetics , Lysogeny , Base Sequence , DNA Nucleotidyltransferases/genetics , Integrases , Molecular Sequence Data , Plasmids , Promoter Regions, Genetic , Sequence Homology, Nucleic Acid , beta-Galactosidase/metabolism
17.
EMBO J ; 5(2): 433-40, 1986 Feb.
Article in English | MEDLINE | ID: mdl-3011407

ABSTRACT

A combination of two methods for detecting distant relationships in protein primary sequences was used to compare the site-specific recombination proteins encoded by bacteriophage lambda, phi 80, P22, P2, 186, P4 and P1. This group of proteins exhibits an unexpectedly large diversity of sequences. Despite this diversity, all of the recombinases can be aligned in their C-terminal halves. A 40-residue region near the C terminus is particularly well conserved in all the proteins and is homologous to a region near the C terminus of the yeast 2 mu plasmid Flp protein. This family of recombinases does not appear to be related to any other site-specific recombinases. Three positions are perfectly conserved within this family: histidine, arginine and tyrosine are found at respective alignment positions 396, 399 and 433 within the well-conserved C-terminal region. We speculate that these residues contribute to the active site of this family of recombinases, and suggest that tyrosine-433 forms a transient covalent linkage to DNA during strand cleavage and rejoining.


Subject(s)
Bacteriophage lambda/enzymology , Coliphages/enzymology , DNA Helicases/genetics , DNA Nucleotidyltransferases/genetics , Amino Acid Sequence , Integrases , Protein Conformation , Species Specificity
18.
Mol Gen Genet ; 195(1-2): 44-51, 1984.
Article in English | MEDLINE | ID: mdl-6092863

ABSTRACT

The integration and attachment regions of bacteriophage P4 have been cloned into a multicopy plasmid. This plasmid can integrate into the E. coli chromosome at the same location as the parent phage. Integration increases the stability of the plasmid and allows it to be retained even under conditions in which a non-integrated plasmid would be lost. None of the genes needed for P4 lytic growth is required for integration. The P4 integration and attachment regions have been cloned on separate plasmids. A plasmid that carries the attachment site can integrate into the chromosome only if another plasmid that carries the P4 integration functions is present. A plasmid that carries only this trans-acting integration function cannot integrate. Using deletion mutants of the plasmid, the maximum size of the region needed for integration has been determined to be 1.6 kb, of which no more than 1.2 kb codes for the integrase protein. A nonsense mutant defective in integration has been isolated by using a rapid screening procedure that identifies unstable plasmids.


Subject(s)
Cloning, Molecular , Coliphages/genetics , Escherichia coli/genetics , Genes, Viral , Base Sequence , Coliphages/enzymology , DNA Helicases/genetics , DNA Restriction Enzymes , Integrases , Mutation , Nucleic Acid Hybridization , Plasmids , Temperature
19.
J Bacteriol ; 153(1): 93-9, 1983 Jan.
Article in English | MEDLINE | ID: mdl-6571730

ABSTRACT

Cells of Pseudomonas stutzeri are naturally transformed by homologous chromosomal DNA; they do not require chemical treatment to become competent. This capacity to undergo natural transformation was found to be shared by the closely related species P. mendocina, P. alcaligenes, and P. pseudoalcaligenes, but was not detectable in strains of P. aeruginosa, P. perfectomarinus, P. putida, P. fluorescens, or P. syringae. P. stutzeri could be transformed either on plates or in liquid medium. Only double-stranded chromosomal DNA was effective; single-stranded DNA and plasmid DNA were not. DNA fragments larger than 10 kilobase pairs were more effective than smaller fragments. The transformation frequency was proportional to DNA concentration from 1 ng/ml to 1 microgram/ml; higher concentrations were saturating. The maximum frequency, about 10(-4) transformants per recipient cell, was obtained with cells from a culture in the early stationary growth phase. A variety of chromosomal mutations have been transformed, including mutations to auxotrophy and to antibiotic resistance. Other systems for genetic exchange in P. stutzeri have not yet been found; transformation offers a means for the genetic analysis of this metabolically versatile organism.


Subject(s)
Pseudomonas/genetics , Transformation, Bacterial , Chromosomes, Bacterial , DNA, Bacterial/genetics , DNA, Single-Stranded/genetics , Genetic Markers , Plasmids , Pseudomonas/classification , Species Specificity
20.
J Bacteriol ; 145(1): 299-305, 1981 Jan.
Article in English | MEDLINE | ID: mdl-6450746

ABSTRACT

A procedure was developed for introducing the coliphage Mu d1 (Apr lac) into Salmonella typhimurium in order to construct gene fusions that place the structural genes of the lac operon under the control of the promoter-regulatory region of other genes. To introduce Mu d1 from Escherichia coli K-12 into S. typhimurium, which is normally not a host for Mu, we first constructed an E. coli double lysogen carrying the defective Mu d1 phage and a Mu-P1 hybrid helper phage (MuhP1) that confers the P1 host range. A lysate prepared from this strain was used to infect a P1-sensitive (i.e., galE), restriction-deficient, modification-proficient strain of S. typhimurium, and a double lysogen carrying Mu d1 and MuhP1 was isolated. Induction of the latter strain produced lysates capable of infecting and generating gene fusions in P1-sensitive strains of S. typhimurium. In this paper we describe the construction of pyr::lac fusions by this technique.


Subject(s)
Bacteriophage mu/genetics , DNA, Recombinant , Operon , Pyrimidines/biosynthesis , Salmonella typhimurium/genetics , Genes , Lac Operon , Lysogeny , Transduction, Genetic
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