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1.
Phys Chem Chem Phys ; 25(13): 9656-9668, 2023 Mar 29.
Article in English | MEDLINE | ID: mdl-36943209

ABSTRACT

DFT calculations were performed to study the effect on energetic and magnetic stability when clusters with up to 24 lithium atoms were doped with one and two atoms of yttrium. In this, the effect of the charge was considered. As a result, some stable structures were identified as possible magnetic superatoms, among them, the YLi12+ cluster with an icosahedron geometry with a spin magnetic moment of 4 bohr magnetons. The participation of yttrium in the electron density of the unpaired electrons providing magnetism in clusters was corroborated at the level of a density of states (DOS) calculation and a spin density calculation. In particular, in the Y2Li12+ superatom, it was found that the encapsulated yttrium atom participates with 35.02% and the second yttrium atom with 15.04%. These percentages, with a contribution from p orbitals, but to a greater extent by d orbitals. The complementation to these percentages is due to the participation of the s and p orbitals of the lithium atoms. In general, doping with a second yttrium atom allowed to obtain a greater amount of high magnetic moments, and considering charged clusters allowed to obtain also high magnetic moments.

2.
J Phys Chem A ; 125(48): 10463-10474, 2021 Dec 09.
Article in English | MEDLINE | ID: mdl-34812636

ABSTRACT

Analytical calculation of alchemical derivatives based on auxiliary density perturbation theory is described, coded, and validated. For the case where the nucleus is a hydrogen atom and the nuclear charge is changed from 1 to 0, it turns out that a good estimate of the proton binding energies can be obtained very efficiently. First-order results correspond exactly to the molecular electrostatic potential evaluated at the hydrogen nucleus location (removing self-repulsion), in agreement with previously reported extensive studies. Therefore, the second-order results reported here are refinements in accuracy that finally allow a quantitative exploration of differential acidity. Furthermore, the recently reported h function is produced in its analytical form as a byproduct and local descriptor associated with the proton binding energy values found with this approach. In an example application, proton binding energies are computed for a family of imidazolium derivatives to demonstrate the capabilities and the stability of the method with respect to changes in basis set or exchange-correlation functional.

3.
Anal Bioanal Chem ; 413(9): 2467-2479, 2021 Apr.
Article in English | MEDLINE | ID: mdl-33532915

ABSTRACT

The hollow fiber liquid-phase microextraction allows highly selective concentration of organic compounds that are at trace levels. The determination of those analytes through the supercritical fluid chromatography usage is associated with many analytical benefits, which are significantly increased when it is coupled to a mass spectrometry detector, thus providing an extremely sensitive analytical technique with minimal consumption of organic solvents. On account of this, a hollow fiber liquid-phase microextraction technique in two-phase mode combined with supercritical fluid chromatography coupled to mass spectrometry was developed for quantifying 19 multiclass emerging contaminants in water samples in a total chromatographic time of 5.5 min. The analytical method used 40 µL of 1-octanol placed in the porous-walled polypropylene fiber as the acceptor phase, and 1 L of water sample was the donor phase. After extraction and quantification techniques were optimized in detail, a good determination coefficient (r2 > 0.9905) in the range of 0.1 to 100 µg L-1, for most of the analytes, and an enrichment factor in the range of 7 to 28,985 were obtained. The recovery percentage (%R) and intraday precision (%RSD) were in the range of 80.80-123.40%, and from 0.48 to 16.89%, respectively. Limit of detection and quantification ranged from 1.90 to 35.66 ng L-1, and from 3.41 to 62.11 ng L-1, respectively. Finally, the developed method was successfully used for the determination of the 19 multiclass emerging contaminants in superficial and wastewater samples.

4.
Phys Chem Chem Phys ; 21(41): 23102-23110, 2019 Oct 24.
Article in English | MEDLINE | ID: mdl-31603174

ABSTRACT

With the idea of proposing solid state systems that have a high storage capacity of molecular hydrogen, a density functional theory study of magnesium oxide (MgO)n clusters (n = 1-10) was carried out. Hydrogen-magnesium oxide systems presented adsorption energy values in accordance with the previously reported studies of physisorption processes; additionally negative values of ΔGads were found describing adsorption as a favorable process. Here, the (MgO)7 cluster presented the highest adsorption energy. The storage capacity by weight of the magnesium oxide clusters was greater than the recommended percentage (7.5%) by the U.S. Department of Energy. QTAIM analysis and non-covalent index plots highlighted the weak nature of the interaction between the MgO clusters and hydrogen molecules, and the fundamental role of the Mg-O bonds' polarity in the systems' storage capacity.

5.
Chem Biol Drug Des ; 94(4): 1782-1798, 2019 10.
Article in English | MEDLINE | ID: mdl-31207116

ABSTRACT

The study of γ-aminobutyric acid B receptor (GABAB ) activation is of great interest for several brain disorders. The search of new GABAB receptor agonists has been carried out by many research groups. As a result, Baclofen has become the prototypical GABAB receptor agonist. However, several attempts have been made to modify its structure to generate derivatives with improved activity. In this work, we carried out a theoretical and computational study for a wide range of GABAB receptor agonists reported in the literature. Molecular docking and QSAR techniques were combined by using the interaction energies of the agonists with the key residues of GABAB receptor, as molecular descriptors for the QSAR construction. The resulting mathematical model suggests that the activity of GABAB receptor agonists is influenced by three factors: their shape and molecular size (PW5 and PJI2), their constitutional features (ELUMO and T(N…O)) and the energy interaction with GABAB receptor (ETRP278 ). This model was validated by the QUIK, REDUNDANCY and OVERFITTING rules, and its predicted ability was tasted by the QLOO , QASYM , R02 and rm2 rules. Finally, six new compounds are proposed (35-40) with high potential to be used as GABAB receptor agonists.


Subject(s)
GABA-B Receptor Agonists/chemistry , Molecular Docking Simulation , Receptors, GABA-B/chemistry , Humans , Quantitative Structure-Activity Relationship
6.
ACS Omega ; 3(9): 11252-11261, 2018 Sep 30.
Article in English | MEDLINE | ID: mdl-31459233

ABSTRACT

Density functional theory calculations based on magnetic and energetic stability criteria were performed to study a series of yttrium-doped lithium neutral clusters. A relativistic approximation was employed to properly describe the energy and multiplicity of the given clusters' fundamental states. The interaction of the 4d-Y atomic orbitals with the sp-Li states had an important role in the magnetic and energetic behavior of the selected systems. The spin density was concentrated over the yttrium atom regardless of the size of the cluster. Li7Y is a new stable superatom due to its enhanced magnetic properties.

7.
Eur J Pharmacol ; 814: 18-27, 2017 Nov 05.
Article in English | MEDLINE | ID: mdl-28757324

ABSTRACT

There are many chronic diseases related with inflammation. The chronic inflammation can produce other problems as cancer. Therefore, it is necessary to design drugs with better anti-inflammatory activity than those in the clinic. Likewise, these could be used in chronic treatments with minimum adverse effects. The amide or ester functionality in combination with the insertion of a silyl alkyl moiety is able to improve some drug properties. In this context, the evaluation of a group of silicon containing ibuprofen derivatives (SCIDs) as antioxidants and anti-inflammatory agents is reported. Antioxidant activity was evaluated by the 2,2-Diphenyl-1-picrylhydrazyl (DPPH⨪), 2,2'-Azino-bis(3-ethylbenzothiazoline-6-sulfonic) acid (ABTS•+) and the Fe(II) chelating ability methods. The anti-inflammatory activity was determined by using the carrageenan induced rat paw edema. The gastrotoxic profile of the SCIDs that displayed significant anti-inflammatory activity was determined by the indomethacin induced ulceration method. The SCIDs performed better than ibuprofen as chelating agents for Fe(II) and as scavengers for the free radicals DPPH• and ABTS•+. On the anti-inflammatory test, compound 4a inhibited the edema up to 87%, while 4d &10b achieved significant inflammation inhibition at a lower effective dose 50 (ED50) than ibuprofen´s. None of the SCIDs endowed with anti-inflammatory activity, showed significant gastrotoxic effects with respect to those displayed by ibuprofen. Based on the experimental results and aided by the theoretical docking approach, it was possible to rationalize how the SCIDs may bind to cyclooxygenase isoforms and helped to explain their reduced gastrotoxicity. The evaluated effects were improved in SCIDs with respect to ibuprofen.


Subject(s)
Computer Simulation , Ibuprofen/chemistry , Ibuprofen/pharmacology , Silicon/chemistry , Animals , Anti-Inflammatory Agents/chemistry , Anti-Inflammatory Agents/metabolism , Anti-Inflammatory Agents/pharmacology , Antioxidants/chemistry , Antioxidants/metabolism , Antioxidants/pharmacology , Benzothiazoles/chemistry , Biphenyl Compounds/chemistry , Catalytic Domain , Cyclooxygenase 2/chemistry , Cyclooxygenase 2/metabolism , Ibuprofen/metabolism , Iron Chelating Agents/chemistry , Iron Chelating Agents/metabolism , Iron Chelating Agents/pharmacology , Male , Molecular Docking Simulation , Picrates/chemistry , Rats , Rats, Wistar , Sulfonic Acids/chemistry
8.
Acta Crystallogr C Struct Chem ; 71(Pt 9): 788-92, 2015 Sep.
Article in English | MEDLINE | ID: mdl-26322611

ABSTRACT

Two new molecular structures, namely 1,3-bis(trimethylsilyl)-1H-benzimidazole-2(3H)-thione, C13H22N2SSi2, (2), and 1-trimethylsilyl-1H-benzimidazole-2(3H)-thione, C10H14N2SSi, (3), are reported. Both systems were derived from 1H-benzimidazole-2(3H)-thione. Noncovalent C-H···π interactions between the centroid of the benzmidazole system and the SiMe3 groups form helicoidal arrangements in (2). Dimerization of (3) results in the formation of R2(2)(8) rings via N-H···S interactions, along with parallel π-π interactions between imidazole and benzene rings.


Subject(s)
Benzimidazoles/chemistry , Silanes/chemistry , Thiones/chemistry , Crystallography, X-Ray , Hydrogen Bonding , Molecular Structure
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