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1.
J Eur Acad Dermatol Venereol ; 36(12): 2430-2437, 2022 Dec.
Article in English | MEDLINE | ID: mdl-35920760

ABSTRACT

BACKGROUND: Childhood maltreatment (CM) is related to poor physical and mental health outcomes in adults. Knowledge on the impact of CM on skin diseases is limited, and no study has previously addressed the association of CM with atopic dermatitis (AD) in adult age. OBJECTIVES: To analyse the prevalence of CM in individuals with physician-diagnosed AD, and to examine the relationship between different types of CM with physician-diagnosed AD in a general population sample of German adults. METHODS: Data from 2973 participants from the cross-sectional population-based Study of Health in Pomerania (SHIP) TREND-0 were analysed (aged 20 to 83 years; 51.4% female). We administered the Childhood Trauma Questionnaire (CTQ) assessing emotional, physical and sexual abuse, and emotional and physical neglect. AD was diagnosed by dermatologists in a standardized clinical examination. We conducted logistic regression analyses adjusted for age, sex and school education to investigate the association of CM types with AD. RESULTS: Among all individuals with AD, 20.6% reported to have experienced at least one type of moderate or severe CM. Emotional and physical neglect were the most frequently reported CM types. Overall, the prevalence of CM types among individuals with AD did not differ from those among individuals without AD. We found no association of CM type with AD. CONCLUSIONS: This is the first study investigating the association of CM with AD in adults. CM was common in the present general population sample, emphasizing that CM is an important public health problem. Our findings suggest that CM is not a risk factor for AD. It might be hypothesized that AD severity is a crucial outcome, and that CM history is a factor with impact on disease severity and course rather than a risk factor for the development of AD. Longitudinal studies are required to address this question.


Subject(s)
Child Abuse , Dermatitis, Atopic , Adult , Child , Humans , Female , Male , Cross-Sectional Studies , Child Abuse/psychology , Cohort Studies , Dermatitis, Atopic/epidemiology , Surveys and Questionnaires
2.
Nervenarzt ; 84(1): 55-64, 2013 Jan.
Article in German | MEDLINE | ID: mdl-22215217

ABSTRACT

BACKGROUND: The number of schizophrenic patients admitted to forensic hospitals according to section 63 of the German Criminal Code has increased continuously over the past years. Prior to admission to a forensic ward, two thirds of schizophrenic patients have been admitted to a general psychiatric institution at least once. Among other factors, forensic admission is seen as a consequence of insufficient pretreatment in general psychiatry. This study aims to identify differences regarding the history of treatment of forensic and general psychiatric patients diagnosed with schizophrenia. METHOD: The matched samples include 72 male patients from forensic wards and 72 male patients from general psychiatry diagnosed with schizophrenia. The history of psychiatric treatment was reconstructed by interviewing the patients as well as the outpatient psychiatrists and by analyzing these patients' medical records. RESULTS: Both groups showed similar risk factors, however, forensic patients had a higher number of previous convictions and were convicted more often for violent offences. Furthermore, the data indicate that forensic patients are less integrated into psychiatric care and showed a lower rate of treatment compliance prior to admission to a forensic ward. CONCLUSIONS: The results provide support for the arrangement of an intensive outpatient aftercare, especially for schizophrenic patients with comorbid substance abuse disorders and previous convictions for violent offences.


Subject(s)
Commitment of Mentally Ill , Patient Readmission/statistics & numerical data , Schizophrenia/epidemiology , Schizophrenia/rehabilitation , Schizophrenic Psychology , Adult , Commitment of Mentally Ill/legislation & jurisprudence , Comorbidity , Crime/legislation & jurisprudence , Crime/psychology , Crime/statistics & numerical data , Cross-Sectional Studies , Diagnosis, Dual (Psychiatry) , Germany , Humans , Interview, Psychological , Male , Middle Aged , Patient Compliance/psychology , Patient Compliance/statistics & numerical data , Patient Readmission/legislation & jurisprudence , Risk Factors , Schizophrenia/diagnosis , Substance-Related Disorders/diagnosis , Substance-Related Disorders/epidemiology , Substance-Related Disorders/psychology , Substance-Related Disorders/rehabilitation , Treatment Outcome , Violence/legislation & jurisprudence , Violence/psychology , Violence/statistics & numerical data , Young Adult
3.
Am J Nephrol ; 30(5): 468-73, 2009.
Article in English | MEDLINE | ID: mdl-19776560

ABSTRACT

BACKGROUND/AIMS: Cystic epithelia in polycystic kidney disease display features similar to malignant cells. Thiazolidinediones have been shown to have anti-neoplastic properties, therefore we tested the hypothesis that pioglitazone reduces cyst formation, improves renal function, and prolongs survival in a mouse model of polycystic kidney disease. METHODS: PC-Pkd1-KO mice, which have homozygous mutations of the Pkd1 gene in principal cells, were used. On the day after giving birth, mothers were fed standard mouse chow with or without pioglitazone (30 mg/kg chow). After weaning, the assigned diet was continued. At 1 month of age, blood pressure was measured and animals were sacrificed to determine kidney weight, body weight, and serum urea. Kidneys were evaluated for proliferation using Ki-67, apoptosis using TUNEL analysis, and cyst number using MRI. Survival was observed. RESULTS: Pioglitazone did not alter renal function, cell proliferation, apoptosis, or cyst formation in animals with polycystic kidney disease, however it did increase survival. Pioglitazone reduced blood pressure in PC-Pkd1-KO, but not in controls. CONCLUSION: These findings suggest that pioglitazone may have a unique antihypertensive effect in polycystic kidney disease, and that such an effect may promote improved survival.


Subject(s)
Hypertension, Renal/drug therapy , Hypoglycemic Agents/pharmacology , Polycystic Kidney Diseases/drug therapy , Thiazolidinediones/pharmacology , Animals , Blood Pressure/drug effects , Disease Models, Animal , Hypertension, Renal/mortality , Hypertension, Renal/pathology , Kaplan-Meier Estimate , Kidney/drug effects , Kidney/pathology , Kidney/physiology , Mice , Mice, Knockout , Pioglitazone , Polycystic Kidney Diseases/mortality , Polycystic Kidney Diseases/pathology , TRPP Cation Channels/genetics
4.
Biochem Soc Trans ; 29(Pt 2): 111-6, 2001 May.
Article in English | MEDLINE | ID: mdl-11356137

ABSTRACT

Lignin peroxidase (LiP) plays a central role in the biodegradation of the plant cell wall constituent lignin. LiP is able to oxidize aromatic compounds with redox potentials higher than 1.4 V (NHE) by single electron abstraction, but the exact redox mechanism is still poorly understood. The finding in our laboratory that the Cbeta-atom of Trp171 carries a unique modification led us to initiate experiments to investigate the role of this residue. These experiments, employing crystallography, site-directed mutagenesis, protein chemistry, spin-trapping and spectroscopy, yielded the following results: (i) Trp171 is stereospecifically hydroxylated at its Cbeta-atom as the result of an auto-catalytic process, which occurs under turnover conditions in the presence of hydrogen peroxide. (ii) Evidence for the formation of a Trp171 radical intermediate has been obtained using spin-trapping, in combination with peptide mapping and protein crystallography. (iii) Trp171 is very likely to be involved in electron transfer from natural substrates to the haem cofactor via LRET. (iv) Mutagenetic substitution of Trp171 abolishes completely the oxidation activity for veratryl alcohol, but not for artificial substrates. (v) Structural changes in response to the mutation are marginal. Therefore the lack of activity is due to the absence of the redox active indole side chain.


Subject(s)
Peroxidases/chemistry , Peroxidases/metabolism , Fungi/enzymology , Heme/metabolism , Hydroxylation , Lignin/metabolism , Models, Molecular , Oxidation-Reduction , Peroxidases/genetics , Plants/metabolism , Plants/microbiology , Protein Conformation , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Structure-Activity Relationship , Tryptophan/metabolism
5.
J Mol Biol ; 305(4): 851-61, 2001 Jan 26.
Article in English | MEDLINE | ID: mdl-11162097

ABSTRACT

The heme enzyme lignin peroxidase (LiP) from the white rot fungus Phanerochaete chrysosporium contains a solvent exposed redox active tryptophan residue (Trp171) that carries a unique hydroxy group stereo-specifically attached to its C(beta) atom. A Trp171Phe mutant has no activity at all towards the substrate veratryl alcohol. The mechanism of veratryl alcohol oxidation involving beta-hydroxy-Trp171 is largely unknown. Here, we present the first crystal structures of LiP isozyme H8 at high resolution in its pristine non-hydroxylated form, of the C(beta)-hydroxylated form, and of the Trp171Phe mutant using recombinantly expressed and refolded protein produced from Escherichia coli. As a consequence, all structures are unglycosylated. Structural changes in response to the mutation are marginal and allow us to attribute the complete lack of activity exclusively to the absence of the redox active indole side-chain. The origin of the stereospecificity of the Trp171 hydroxylation can be explained on structural grounds. A reaction mechanism involving Trp171 is proposed and the possible function of the modification is discussed. Another important result regarding the ongoing debate on the co-ordination state of the heme iron in the resting state is that the iron is six co-ordinate in all cases the data being collected at room temperature. The mean distance from the iron to the distal water ligand is 2.18(+/-0.08) A. The radical scavenger orcinol was found to decrease radiation damage to the crystals, during data collection at room temperature.


Subject(s)
Amino Acid Substitution/genetics , Escherichia coli/genetics , Peroxidases/chemistry , Peroxidases/metabolism , Phanerochaete/enzymology , Tryptophan/metabolism , Benzyl Alcohols/metabolism , Catalysis , Crystallography, X-Ray , Heme/chemistry , Heme/metabolism , Hydrogen Bonding , Hydroxylation , Isoenzymes/chemistry , Isoenzymes/genetics , Isoenzymes/metabolism , Models, Molecular , Mutation/genetics , Oxidation-Reduction , Peroxidases/genetics , Phanerochaete/genetics , Protein Conformation , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Tryptophan/genetics
6.
Acta Crystallogr D Biol Crystallogr ; 57(Pt 1): 37-43, 2001 Jan.
Article in English | MEDLINE | ID: mdl-11134925

ABSTRACT

The crystal structure of affinity-purified Thermomonospora fusca beta-mannanase has been solved despite the lack of the major part of the amino-acid sequence. A high-quality electron-density map allowed the identification of a stretch of eight amino acids close to the C-terminus which was used to design a degenerate downstream PCR primer. Together with a specific primer previously derived from the N-terminus, 95.7% of the mannanase gene sequence was obtained from genomic T. fusca DNA by PCR. The structure-derived sequence was then compared with the DNA-derived sequence and corrected when necessary. Applying the presented protocol, there was no need to manually build a model at an early stage of structure determination, an erroneous and tedious process, especially in the absence of the amino-acid sequence. Using the DNA sequence information and the current version of ARP/wARP, 281 residues, or 93% of the polypeptide chain (including side chains), were built and refined to an R factor of 16.5% without any manual intervention.


Subject(s)
Mannosidases/chemistry , Amino Acid Sequence , Base Sequence , DNA , Electrons , Molecular Sequence Data , Protein Conformation , beta-Mannosidase
7.
Biochemistry ; 39(8): 1897-902, 2000 Feb 29.
Article in English | MEDLINE | ID: mdl-10684638

ABSTRACT

Sterol carrier protein 2, also known as nonspecific lipid transfer protein is a ubiquitous, small, basic protein of 13 kDa found in animals. Its primary structure is highly conserved between different species, and it has been implicated in the intracellular transport of lipids and in a wide range of other in vitro functions related to sterol and fatty acid metabolism. Sterol carrier protein 2 deficiency in mice leads to elevated concentrations of phytanic acid in the serum and causes hepatocarcinogenesis. However, its actual physiological role is still unknown. Although sterol carrier protein 2 has been studied extensively in the past 20 years, very little is known concerning its three-dimensional structure. The crystal structure of rabbit sterol carrier protein 2, determined at 1.8 A resolution with the MIRAS method, shows a unique alpha/beta-fold. The core of this protein forms a five-stranded antiparallel beta-sheet flanked by five helices. A C-terminal segment (residues 114-123), together with part of the beta-sheet and four alpha-helices, form a hydrophobic tunnel providing the environment for apolar ligands such as fatty acids and fatty acyl-coenzyme As. Structurally well-characterized nonspecific lipid transfer proteins from plants have hydrophobic tunnel-like cavities, which were identified as the binding site for fatty acids and related apolar ligands. Despite the fact that plant nonspecific lipid transfer proteins are smaller proteins than sterol carrier protein 2, show no sequence homology to sterol carrier protein 2, and are structurally unrelated, the cavities of these two classes of proteins are very similar with respect to size, shape, and hydrophobicity, suggesting a common functional role.


Subject(s)
Carrier Proteins/chemistry , Plant Proteins , Sterols/chemistry , Animals , Binding Sites , Carrier Proteins/metabolism , Crystallography, X-Ray , Lipid Metabolism , Models, Molecular , Molecular Sequence Data , Protein Conformation , Protein Folding , Protein Structure, Secondary , Protein Structure, Tertiary , Rabbits , Recombinant Proteins
8.
Nature ; 408(6815): 990-4, 2000.
Article in English | MEDLINE | ID: mdl-11140688

ABSTRACT

The human kidney is composed of roughly 1.2-million renal tubules that must maintain their tubular structure to function properly. In autosomal dominant polycystic kidney disease (ADPKD) cysts develop from renal tubules and enlarge independently, in a process that ultimately causes renal failure in 50% of affected individuals. Mutations in either PKD1 or PKD2 are associated with ADPKD but the function of these genes is unknown. PKD1 is thought to encode a membrane protein, polycystin-1, involved in cell-cell or cell-matrix interactions, whereas the PKD2 gene product, polycystin-2, is thought to be a channel protein. Here we show that polycystin-1 and -2 interact to produce new calcium-permeable non-selective cation currents. Neither polycystin-1 nor -2 alone is capable of producing currents. Moreover, disease-associated mutant forms of either polycystin protein that are incapable of heterodimerization do not result in new channel activity. We also show that polycystin-2 is localized in the cell in the absence of polycystin-1, but is translocated to the plasma membrane in its presence. Thus, polycystin-1 and -2 co-assemble at the plasma membrane to produce a new channel and to regulate renal tubular morphology and function.


Subject(s)
Calcium Channels/metabolism , Kidney Tubules/metabolism , Membrane Proteins/metabolism , Polycystic Kidney, Autosomal Dominant/metabolism , Proteins/metabolism , Animals , CHO Cells , Calcium/metabolism , Calcium Signaling , Cations/metabolism , Cell Membrane/metabolism , Cricetinae , Electrophysiology , Humans , Membrane Proteins/genetics , Molecular Sequence Data , Mutation , Polycystic Kidney, Autosomal Dominant/genetics , Proteins/genetics , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , TRPP Cation Channels , Transfection
10.
Arch Biochem Biophys ; 370(1): 86-92, 1999 Oct 01.
Article in English | MEDLINE | ID: mdl-10496980

ABSTRACT

The heme enzyme lignin peroxidase contains a unique Cbeta-hydroxylated tryptophan residue (Trp171) on the surface of the enzyme. Mutagenetic substitution of Trp171 abolishes completely the veratryl alcohol oxidation activity of the enzyme. This led us to surmise that Trp171 may be involved in electron transfer from natural substrates to the heme cofactor. Here we present evidence for the formation of a transient radical on Trp171 using spin-trapping in combination with peptide mapping. The spin-trap methyl nitroso propane forms a covalent adduct with Trp171 in the presence of hydrogen peroxide which can be detected by its characteristic visible absorbance spectrum. A very similar chromophore can be obtained in a small molecular model system from N-acetyl tryptophanamide, the spin-trap, and a single-electron abstracting system. The precise site the spin-trap is attached to could be identified in a crystal structure of spin-trap/hydrogen peroxide-treated enzyme as the C6 atom of the indole ring of Trp171. These results indicate that Trp171 is redox-active and that it forms an indole radical by transfer of an electron to the heme of compound I and/or II. Apart from cytochrome c peroxidase and DNA photolyase, lignin peroxidase appears to be the third enzyme only which utilizes a tryptophan residue as an integral part of its redox catalysis.


Subject(s)
Peroxidases/chemistry , Tryptophan , Amino Acid Substitution , Crystallography, X-Ray , Electron Spin Resonance Spectroscopy/methods , Hydrogen Peroxide/pharmacology , Hydroxylation , Isoenzymes/chemistry , Isoenzymes/metabolism , Mutagenesis, Site-Directed , Oxidation-Reduction , Peptide Fragments/chemistry , Peroxidases/metabolism , Spectrophotometry , Spin Labels
11.
Acta Crystallogr D Biol Crystallogr ; 55(Pt 8): 1478-80, 1999 Aug.
Article in English | MEDLINE | ID: mdl-10417421

ABSTRACT

Sterol carrier protein 2 (SCP2) is a basic intracellular protein which facilitates the in vitro intermembrane transfer of cholesterol, phospholipids and glycolipids. SCP2 was expressed in Escherichia coli, purified to apparent electrophoretic homogeneity and crystallized. Single crystals were obtained by hanging-drop vapour diffusion using ammonium sulfate as precipitant. These crystals belong to space group P4(1)2(1)2 or its enantiomorph, with unit-cell parameters a = b = 57.5, c = 86.5 A, and have one molecule in the crystallographic asymmetric unit. Intensity data to 1.8 A resolution were collected from native SCP2 crystals using synchrotron radiation, were processed and scaled with an R(linear) = 4.9%.


Subject(s)
Carrier Proteins/chemistry , Carrier Proteins/isolation & purification , Plant Proteins , Animals , Carrier Proteins/genetics , Crystallization , Crystallography, X-Ray , Escherichia coli/genetics , Molecular Weight , Rabbits , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Sterols/metabolism
12.
Acta Crystallogr D Biol Crystallogr ; 55(Pt 5): 1069-73, 1999 May.
Article in English | MEDLINE | ID: mdl-10216309

ABSTRACT

A fragment of chicken tenascin consisting of fibronectin type-III domains 5 and 6 has been expressed in Escherichia coli. After modifying a previously reported purification protocol, an electrophoretically homogeneous recombinant protein was obtained from which various crystal forms could be grown under identical conditions. Only one form was suitable for structure determination. These crystals belong to space group P21, with unit-cell parameters a = 45.2, b = 57.9, c = 72.2 A, beta = 91.4 degrees, and diffract to at least 2.6 A resolution using synchrotron radiation. From density measurements of the crystals, it was found that there are two molecules in the asymmetric unit. Diffraction data of native, two platinum-derivative and one palladium-derivative crystals were collected.


Subject(s)
Cell Adhesion Molecules, Neuronal/chemistry , Cell Adhesion Molecules, Neuronal/metabolism , Heparin/chemistry , Heparin/metabolism , Peptide Fragments/chemistry , Tenascin/chemistry , Animals , Binding Sites , Chickens , Contactins , Crystallization , Crystallography, X-Ray , Escherichia coli/genetics , Escherichia coli/metabolism , Humans , Macromolecular Substances , Peptide Fragments/isolation & purification , Peptide Fragments/metabolism , Protein Structure, Tertiary , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Tenascin/isolation & purification , Tenascin/metabolism
13.
J Mol Biol ; 286(3): 809-27, 1999 Feb 26.
Article in English | MEDLINE | ID: mdl-10024453

ABSTRACT

The crystal structure of lignin peroxidase (LiP) from the white rot fungus Phanerochaete chrysosporium was refined to an R-factor of 16.2 % utilizing synchrotron data in the resolution range from 10 to 1.7 A. The final model comprises all 343 amino acid residues, 370 water molecules, the heme, four carbohydrates, and two calcium ions. Lignin peroxidase shows the typical peroxidase fold and the heme has a close environment as found in other peroxidases. During refinement of the LiP model an unprecedented modification of an amino acid was recognized. The surface residue tryptophan 171 in LiP is stereospecifically hydroxylated at the Cbeta atom due to an autocatalytic process. We propose that during the catalytic cycle of LiP a transient radical at Trp171 occurs that is different from those previously assumed for this type of peroxidase. Recently, the existence of a second substrate-binding site centered at Trp171 has been reported, by us which is different from the "classical heme edge" site found in other peroxidases. Here, we report evidence for a radical formation at Trp171 using spin trapping, which supports the concept of Trp171 being a redox active amino acid and being involved in the oxidation of veratryl alcohol. On the basis of our current model, an electron pathway from Trp171 to the heme is envisaged, relevant for the oxidation of veratryl alcohol and possibly lignin. Beside the opening leading to the heme edge, which can accommodate small aromatic substrate molecules, a smaller channel giving access to the distal heme pocket was identified that is large enough for molecules such as hydrogen peroxide. Furthermore, it was found that in LiP the bond between the heme iron and the Nepsilon2 atom of the proximal histidine residue is significantly longer than in cytochrome c peroxidase (CcP). The weaker Fe-N bond in LiP renders the heme more electron deficient and destabilizes high oxidation states, which could explain the higher redox potential of LiP as compared to CcP.


Subject(s)
Peroxidases/chemistry , Phanerochaete/enzymology , Tryptophan/chemistry , Benzyl Alcohols/metabolism , Binding Sites , Calcium/metabolism , Crystallography, X-Ray , Free Radicals/metabolism , Fungal Proteins/chemistry , Hemeproteins/chemistry , Hydrogen Bonding , Hydrogen Peroxide/metabolism , Lignin/metabolism , Models, Molecular , Molecular Structure , Oxidation-Reduction , Protein Folding , Protein Structure, Secondary , Protoporphyrins/chemistry , Spectrophotometry , Spin Labels
15.
Structure ; 6(11): 1433-44, 1998 Nov 15.
Article in English | MEDLINE | ID: mdl-9817845

ABSTRACT

BACKGROUND: . beta-Mannanases hydrolyse the O-glycosidic bonds in mannan, a hemicellulose constituent of plants. These enzymes have potential use in pulp and paper production and are of significant biotechnological interest. Thermostable beta-mannanases would be particularly useful due to their high temperature optimum and broad pH tolerance. The thermophilic actinomycete Thermomonospora fusca secretes at least one beta-mannanase (molecular mass 38 kDa) with a temperature optimum of 80 degreesC. No three-dimensional structure of a mannan-degrading enzyme has been reported until now. RESULTS: . The crystal structure of the thermostable beta-mannanase from T. fusca has been determined by the multiple isomorphous replacement method and refined to 1.5 A resolution. In addition to the native enzyme, the structures of the mannotriose- and mannohexaose-bound forms of the enzyme have been determined to resolutions of 1.9 A and 1.6 A, respectively. CONCLUSIONS: . Analysis of the -1 subsite of T. fusca mannanase reveals neither a favourable interaction towards the axial HO-C(2) nor a discrimination against the equatorial hydroxyl group of gluco-configurated substrates. We propose that selectivity arises from two possible mechanisms: a hydrophobic interaction of the substrate with Val263, conserved in family 5 bacterial mannanases, which discriminates between the different conformations of the hydroxymethyl group in native mannan and cellulose; and/or a specific interaction between Asp259 and the axial hydroxyl group at the C(2) of the substrate in the -2 subsite. Compared with the catalytic clefts of family 5 cellulases, the groove of T. fusca mannanase has a strongly reduced number of aromatic residues providing platforms for stacking with the substrate. This deletion of every second platform is in good agreement with the orientation of the axial hydroxyl groups in mannan.


Subject(s)
Actinomycetales/enzymology , Mannosidases/chemistry , Amino Acid Sequence , Carbohydrate Sequence , Catalysis , Enzyme Stability , Hot Temperature , Mannosidases/metabolism , Molecular Sequence Data , Protein Conformation , Sequence Homology, Amino Acid , Substrate Specificity , beta-Mannosidase
16.
Biochemistry ; 37(43): 15097-105, 1998 Oct 27.
Article in English | MEDLINE | ID: mdl-9790672

ABSTRACT

It has been shown recently that Trp171 of lignin peroxidase (LiP) is hydroxylated at the Cbeta position [Blodig, W., Doyle, W. A., Smith, A. T., Winterhalter, K., Choinowski, T., and Piontek, K. (1998) Biochemistry 37, 8832-8838]. Comparative experiments, carried out on both wild-type fungal and recombinant LiP isoenzyme H8 (LiPH8), indicate that the process of hydroxylation is autocatalytic and that Trp171 may be implicated in catalysis. The role of this residue has therefore been examined using site-directed mutagenesis to obtain recombinant enzymes with Trp171 substituted by Phe or Ser (W171F and W171S LiPH8, respectively). The wild-type recombinant enzyme (LiPH8) was analyzed in solution using 1H NMR spectroscopy and its integrity confirmed prior to the kinetic and spectroscopic characterization of LiPH8 mutants. A charge neutralization mutation in the "classical heme edge" substrate access channel of LiP, in which Glu146 was substituted by Gly (E146G LiPH8), showed substantial activity with respect to veratryl alcohol (VA) oxidation and a marked (2.4 pH units) increase in pKa for the oxidation of a negatively charged difluoroazo dye. More surprisingly, the Trp171 LiPH8 mutants W171F and W171S LiPH8 were found to have lost all activity with VA as substrate, and compounds I and II were unable to react with VA. Both mutants, however, retained substantial activity with two dye substrates. These data provide the first direct evidence for the existence of two distinct substrate interaction sites in LiP, a heme-edge site typical of those encountered in other peroxidases and a second, novel site centered around Trp171 which is required for the oxidation of VA. Stopped-flow kinetic studies showed that all the mutants examined reacted normally with hydrogen peroxide to give a porphyrin cation radical (compound I). However, the rapid phase of spontaneous compound I reduction (2.3 s-1), typical of wild-type LiP, was absent in the Trp171 mutants, strongly suggesting that an electron-transfer pathway must exist within the protein leading from the heme to a surface site in close proximity to Trp171. The kinetic competence of such a pathway is dependent on interaction of the enzyme with VA, at or near Trp171.


Subject(s)
Mutagenesis, Site-Directed , Peroxidases/genetics , Peroxidases/metabolism , Basidiomycota/enzymology , Enzyme Stability , Glutamic Acid/genetics , Glycine/genetics , Kinetics , Magnetic Resonance Spectroscopy , Models, Molecular , Oxidation-Reduction , Peroxidases/chemistry , Phenylalanine/genetics , Protein Folding , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Serine/genetics , Spectrophotometry , Substrate Specificity/genetics , Tryptophan/genetics
17.
Biochemistry ; 37(25): 8832-8, 1998 Jun 23.
Article in English | MEDLINE | ID: mdl-9636023

ABSTRACT

In the high-resolution crystal structures of two lignin peroxidase isozymes from the white rot fungus Phanerochaete chrysosporium a significant electron density at single bond distance from the C beta of Trp171 was observed and interpreted as a hydroxy group. To further clarify the nature of this feature, we carried out tryptic digestion of the enzyme and isolated the Trp171 containing peptide. Under ambient conditions, this peptide shows an absorbance spectrum typical of tryptophan. At elevated temperature, however, the formation of an unusual absorbance spectrum with lambda max = 333 nm can be followed that is identical to that of N-acetyl-alpha, beta-didehydrotryptophanamide, resulting upon water elimination from beta-hydroxy tryptophan. The Trp171 containing tryptic peptide isolated from the recombinant and refolded lignin peroxidase produced from Escherichia coli does not contain the characteristic 333 nm absorbance band at any temperature. However, treatment with 3 equiv of H2O2 leads to complete hydroxylation of Trp171. Reducing substrates compete with this process, e.g., in the presence of 0.5 mM veratryl alcohol, about 7 equiv of H2O2 is necessary for complete modification. We conclude that the hydroxylation at the C beta of Trp171 is an autocatalytic reaction which occurs readily under conditions of natural turnover, e.g., in the ligninolytic cultures of P. chrysosporium, which are known to contain an oxidase-based H2O2-generating system. No dependence on dioxygen was found for this oxidative process. Chemical modification of fungal lignin peroxidase with the tryptophan-specific agent N-bromo succinimide leads to a drastically reduced activity with respect to the substrate veratryl alcohol. This suggests that Trp171 is involved in catalysis and that electron transfer from this surface residue to the oxidized heme cofactor is possible under steady-state conditions.


Subject(s)
Fungal Proteins/metabolism , Hydroxyl Radical/metabolism , Peroxidases/metabolism , Tryptophan/metabolism , Basidiomycota/enzymology , Catalysis , Crystallography, X-Ray , Fungal Proteins/chemistry , Fungal Proteins/genetics , Hydroxylation , Models, Molecular , Mutagenesis, Site-Directed , Oxidation-Reduction , Peroxidases/chemistry , Peroxidases/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Tryptophan/genetics
18.
Hum Mol Genet ; 6(9): 1473-81, 1997 Sep.
Article in English | MEDLINE | ID: mdl-9285784

ABSTRACT

The gene for the most common and severe form of autosomal dominant polycystic kidney disease, PKD1, encodes a 14 kb mRNA that is predicted to result in an integral membrane protein of 4302 amino acids. The major challenge faced by researchers attempting to complete mutation analysis of the PKD1 gene has been the presence of several homologous loci also located on chromosome 16. Because the sequence of PKD1 and its homologs is nearly identical in the 5' region of the gene, most traditional approaches to mutation analysis cannot distinguish sequence variants occurring uniquely in PKD1. Therefore, only a small number of mutations have been identified to date and these have all been found in the 3', unique portion of the gene. In order to begin analysis of the duplicated region of PKD1, we have devised a novel strategy that depends on long-range PCR and a single gene-specific primer from the unique region of the gene to amplify a PKD1-specific template that spans exons 23-34. This 10 kb template, amplified from genomic DNA, can be employed for mutation analysis using a wide variety of sequence-based approaches. We have used our long-range PCR strategy to begin screening for sequence variants with heteroduplex analysis, and several affected individuals were discovered to have clusters of base pair substitutions in exons 23 and 25. In two patients, these changes, identified in exon 23, would be predicted to result in multiple amino acid substitutions in a short stretch of the protein. This clustering of base pair substitutions is unusual and suggests that mutation may result from unique structural features of the PKD1 gene.


Subject(s)
DNA/analysis , Polycystic Kidney, Autosomal Dominant/genetics , Proteins/genetics , Amino Acid Sequence , Base Sequence , Blotting, Southern , DNA Primers , Exons/genetics , Molecular Sequence Data , Nucleic Acid Heteroduplexes/genetics , Point Mutation , Polymerase Chain Reaction , Polymorphism, Genetic , TRPP Cation Channels
19.
Proc Natl Acad Sci U S A ; 94(12): 6397-402, 1997 Jun 10.
Article in English | MEDLINE | ID: mdl-9177229

ABSTRACT

The primary structure of polycystin predicts a large integral membrane protein with multiple cell recognition motifs, but its function remains unknown. Insight into polycystin's normal function and its role in the development of autosomal dominant polycystic kidney disease (PKD1) requires the assembly of an extensive collection of molecular reagents to examine its expression and create model systems for functional studies. Development of these crucial reagents has been complicated due to the presence of transcriptionally active homologous loci. We have assembled the authentic full-length PKD1 cDNA and demonstrated expression of polycystin in vitro. Polyclonal antibodies directed against distinct extra- and intracellular domains specifically immunoprecipitated in vitro translated polycystin. The panel of antibodies was used to determine localization of polycystin in renal epithelial and endothelial cell lines and tissues of fetal, adult, and cystic origins. In normal adult kidney and maturing fetal nephrons, polycystin expression was confined to epithelial cells of the distal nephron and vascular endothelial cells. Expression in the proximal nephron was only observed after injury-induced cell proliferation. Polycystin expression was confined to ductal epithelium in liver, pancreas, and breast, and restricted to astrocytes in normal brain. We report clear evidence for the membrane localization of polycystin by both tissue sections and by confocal microscopy in cultured renal and endothelial cells. Interestingly, when cultured cells made cell-cell contact, polycystin was localized to the lateral membranes of cells in contact. These data suggest that polycystin is likely to have a widespread role in epithelial cell differentiation and maturation and in cell-cell interactions.


Subject(s)
Kidney/metabolism , Protein Biosynthesis , Adult , Brain/embryology , Brain/metabolism , Cell Line , Cells, Cultured , DNA, Complementary , Endothelium, Vascular/metabolism , Epithelium/metabolism , Fetus , Gene Library , Humans , Nephrons/embryology , Nephrons/metabolism , Organ Specificity , Polycystic Kidney, Autosomal Dominant , Polymerase Chain Reaction , Proteins/chemistry , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Subcellular Fractions/metabolism , TRPP Cation Channels
20.
Am J Physiol ; 272(4 Pt 1): C1299-308, 1997 Apr.
Article in English | MEDLINE | ID: mdl-9142856

ABSTRACT

The expression of cystic fibrosis transmembrane conductance regulator (CFTR) in the thyroid has not been documented to date, although a role for CFTR in the thyroid follicular epithelium is suggested both clinically, by the occurrence of subclinical hypothyroidism in patients with cystic fibrosis (CF), and physiologically, by the presence of low-conductance, adenosine 3',5'-cyclic monophosphate-activated Cl channels in the follicular cells. Using reverse transcriptase-polymerase chain reaction with nested primers derived from exons 13 and 14 of the human CF gene, we have now documented the presence of CFTR mRNA in the human thyroid. Western blot analyses using six antibodies directed against different domains of human CFTR showed that a 165-kDa band was present in membrane extracts from bovine and human thyroid. This protein has the predicted size of mature CFTR and was not detected with preimmune serum or preadsorbed antiserum. By immunofluorescence and immunoperoxidase, CFTR was located in the follicular cells, with a diffuse, intracellular labeling pattern. Quantitative analysis revealed that 64% of the follicles were CFTR positive, but only 16% of the follicular cells were stained per follicle. The number of CFTR-positive cells was inversely proportional to the size of the follicle. These results 1) demonstrate the expression of CFTR at the mRNA and protein levels in human and bovine thyroid follicular cells and 2) suggest that CFTR expression could be instrumental in follicular enlargement.


Subject(s)
Cystic Fibrosis Transmembrane Conductance Regulator/metabolism , Thyroid Gland/metabolism , Animals , Base Sequence , Blotting, Western , Cattle , Cells, Cultured , Cystic Fibrosis Transmembrane Conductance Regulator/genetics , Epithelial Cells , Epithelium/metabolism , Humans , Immunohistochemistry , Molecular Sequence Data , Polymerase Chain Reaction , RNA, Messenger/metabolism , Thyroid Gland/cytology , Transcription, Genetic
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