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1.
Animals (Basel) ; 13(22)2023 Nov 14.
Article in English | MEDLINE | ID: mdl-38003125

ABSTRACT

Domestic cats (Felis catus), one of the most popular pets, are widespread worldwide. This medium-sized carnivore has well-known negative effects on biodiversity, but there is still a need to better understand the approximate causes of their predation. Based on a citizen science project, we assessed the role of spatiotemporal (i.e., latitude, longitude, and seasons), climatic (i.e., rainfall), anthropogenic (i.e., human footprint, HFI), and individual (i.e., sex and age) variables on the number of preys returned home by cats in metropolitan France. Over the 5048 cats monitored between 2015 and 2022, prey from 12 different classes (n = 36,568) were returned home: 68% mammals, 21% birds, and 8% squamates. Shrews brought home by cats peaked during summer, while rodents were recorded during summer-autumn. Birds brought home by cats peaked in spring-summer and in autumn, and lizards peaked in spring and in late summer. Lower HFI was associated with more voles and mice brought home, and the opposite trend was observed for lizards and birds. Younger cats were more prone to bring home shrews, birds, and reptiles. Although environmental factors play a minor role in prey brought home by cats, some geographical characteristics of prey species distribution partly explains the hunting behaviour of cats.

2.
Ecol Evol ; 12(2): e8365, 2022 Feb.
Article in English | MEDLINE | ID: mdl-35222941

ABSTRACT

At the landscape level, intensification of agriculture, fragmentation, and destruction of natural habitats are major causes of biodiversity loss that can be mitigated at small spatial scales. However, the complex relationships between human activities, landscapes, and biodiversity are poorly known. Yet, this knowledge could help private stakeholders managing seminatural areas to play a positive role in biodiversity conservation.We investigated how water-abstraction sites could sustain species diversity in vascular-plant communities and two taxonomic groups of insect communities in a fragmented agricultural landscape.Landscape-scale variables (connectivity indices and surrounding levels of herbicide use), as well as site-specific variables (soil type for vascular plants, floral availability for Rhopalocera, and low herbaceous cover for Orthoptera), were correlated to structural and functional metrics of species community diversity for these taxonomic groups, measured on 35 industrial sites in the Ile-de-France region in 2018-2019. Rhopalocera and Orthoptera consisted essentially of species with a high degree of dispersal and low specialization, able to reach the habitat patches of the fragmented landscape of the study area. Sandy soil harbored more diverse vascular-plant communities. Plant diversity was correlated to a greater abundance of Rhopalocera and a lower richness of Orthoptera.Increasing landscape connectivity was related to higher abundance of plants and Rhopalocera, and a higher evenness index for Orthoptera communities. Higher levels of herbicide use were related to a decrease in the biodiversity of plants and Rhopalocera abundance. High levels of herbicide favored high-dispersal generalist plants, while high levels of connectivity favored low-dispersal plants. Specialist Orthoptera species were associated with low herbaceous cover and connectivity.Water-abstraction sites are valuable seminatural habitats for biodiversity. Changing intensive agricultural practices in surrounding areas would better contribute to conserving and restoring biodiversity on these sites.

3.
Parasitol Res ; 119(8): 2383-2397, 2020 Aug.
Article in English | MEDLINE | ID: mdl-32607706

ABSTRACT

Although black (Rattus rattus) and brown (Rattus norvegicus) rats are among the most widespread synanthropic wild rodents, there is a surprising scarcity of knowledge about their ecology in the urban ecosystem. In particular, relatively few studies have investigated their helminth species diversity in such habitat. We followed the PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analysis) guideline to synthesize the existing published literature regarding the helminth fauna of urban rats in developed countries (North America, Europe, Australia, New Zealand and Japan). We aimed at describing the species diversity and richness of urban rat helminths, the species prevalence and associations, the methods of investigation, the pathological changes observed in the hosts, the risk factors of infection and the public health significance of rat-borne helminthiases. Twenty-three scientific papers published between 1946 and 2019 were reviewed, half of them were conducted in Europe. Twenty-five helminth species and eight genera were described from the liver, digestive tract, lungs and muscles of urban rats. The most commonly reported parasite was Calodium hepaticum. Prevalence and risk factors of helminth infection in urban rats varied greatly between studies. Observed pathological findings in the rat host were generally minor, except for C. hepaticum. Several rat helminths can parasitize humans and are therefore of public health significance. The lack of references to identification keys and the rare use of molecular tools for species confirmation represent the main limitation of these studies. Knowledge gap on this topic and the needs for future research are discussed.


Subject(s)
Research/trends , Rodent Diseases/parasitology , Animals , Developed Countries/statistics & numerical data , Helminthiasis/epidemiology , Helminthiasis/parasitology , Humans , Prevalence , Public Health/statistics & numerical data , Rats , Risk Factors , Rodent Diseases/epidemiology
4.
Front Vet Sci ; 6: 8, 2019.
Article in English | MEDLINE | ID: mdl-30775369

ABSTRACT

Eurasian red squirrels (Sciurus vulgaris) in the British Isles are the most recently discovered animal reservoir for the leprosy bacteria Mycobacterium leprae and Mycobacterium lepromatosis. Initial data suggest that prevalence of leprosy infection is variable and often low in different squirrel populations. Nothing is known about the presence of leprosy bacilli in other wild squirrel species despite two others (Siberian chipmunk [Tamias sibiricus], and Thirteen-lined ground squirrel [Ictidomys tridecemlineatus]) having been reported to be susceptible to experimental infection with M. leprae. Rats, a food-source in some countries where human leprosy occurs, have been suggested as potential reservoirs for leprosy bacilli, but no evidence supporting this hypothesis is currently available. We screened 301 squirrel samples covering four species [96 Eurasian red squirrels, 67 Eastern gray squirrels (Sciurus carolinensis), 35 Siberian chipmunks, and 103 Pallas's squirrels (Callosciurus erythraeus)] from Europe and 72 Mexican white-throated woodrats (Neotoma albigula) for the presence of M. leprae and M. lepromatosis using validated PCR protocols. No DNA from leprosy bacilli was detected in any of the samples tested. Given our sample-size, the pathogen should have been detected if the prevalence and/or bacillary load in the populations investigated were similar to those found for British red squirrels.

5.
Oecologia ; 188(3): 765-776, 2018 Nov.
Article in English | MEDLINE | ID: mdl-30219947

ABSTRACT

Reproduction costs depend on the general life-history strategies employed by organisms for resource acquisition, the decision rules on resource allocation, and the resource availability. Although the predictability of resource availability is expected to influence the breeding strategy, the relationship between predictability and strategy has rarely been investigated at the population level. One reason is that, while the resource availability is commonly variable in space and time, their predictability is generally assumed constant. Here, we addressed the temporal variation of the breeding strategy and its associated survival cost in a hibernating population of Tamias sibiricus, in which food resources vary in their availability between years and in their predictability within years. Based on 11 years of mark-recapture data, we used multi-event modelling to investigate seasonal variations in reproduction costs of female chipmunks that breed twice a year (spring and summer). In summer, during which a large variety and quantity of resources is available (income breeding strategy), the proportion of breeding females was consistent across years and reproduction yielded no mortality cost. In contrast, in spring, the proportion of breeding females was positively correlated with the amount of resources available for hibernation (partial capital breeding strategy). Spring reproduction yielded no immediate cost, but induced a delayed mortality cost over the next winter if future unknown conditions were unfavorable. Our findings highlight complex temporal reproductive patterns in a short-lived species: not only does the modality of resource acquisition vary among seasons, but also the decision rule to breed and its associated cost.


Subject(s)
Hibernation , Reproduction , Animals , Breeding , Female , Humans , Sciuridae , Seasons
6.
Parasitol Res ; 117(10): 3237-3243, 2018 Oct.
Article in English | MEDLINE | ID: mdl-30058030

ABSTRACT

Introduced Siberian chipmunks Eutamias sibiricus have been reported to be important reservoirs for human Lyme disease, as they may host high numbers of hard ticks carrying Borrelia spp. and other pathogens. In the present study, we assessed the prevalence of Borrelia spp. and other pathogenic bacteria in ectoparasite arthropod species infesting Siberian chipmunks and coexisting native small rodents. Small rodents were trapped with Sherman traps in Veneto (NE Italy), where the largest Italian populations of chipmunks occur. A total of 14 individual ticks were found on 223 rodents, with 6 more ticks obtained from stored dead chipmunks from the same study area. Ectoparasites were screened for pathogens by molecular analyses including species-specific PCR amplifications. Rickettsia monacensis, Borrelia lusitaniae, and Anaplasma platys were present in the parasites of both native rodents and introduced chipmunks. The present findings suggest a role for the invasive species E. sibiricus in the maintenance of the Ixodes ricinus life cycle, which may result in the modification of the transmission dynamics of tick-borne pathogens. Moreover, the presence of Rickettsia in urban populations of chipmunks may represent a serious risk for human health and should be investigated further.


Subject(s)
Anaplasma/isolation & purification , Borrelia/physiology , Ixodes/microbiology , Lyme Disease/microbiology , Rodentia/microbiology , Anaplasma/genetics , Anaplasma/physiology , Animals , Borrelia/genetics , Borrelia/isolation & purification , Disease Reservoirs/microbiology , Humans , Introduced Species , Italy , Ixodes/classification , Lyme Disease/epidemiology , Lyme Disease/transmission , Rickettsia/genetics , Rickettsia/isolation & purification , Rickettsia/physiology , Rodentia/classification , Sciuridae/microbiology , Sciuridae/parasitology
7.
Evolution ; 72(4): 878-892, 2018 04.
Article in English | MEDLINE | ID: mdl-29528493

ABSTRACT

Convergent evolution in similar environments constitutes strong evidence of adaptive evolution. Transported with people around the world, house mice colonized even remote areas, such as Sub-Antarctic islands. There, they returned to a feral way of life, shifting towards a diet enriched in terrestrial macroinvertebrates. Here, we test the hypothesis that this triggered convergent evolution of the mandible, a morphological character involved in food consumption. Mandible shape from four Sub-Antarctic islands was compared to phylogeny, tracing the history of colonization, and climatic conditions. Mandible shape was primarily influenced by phylogenetic history, thus discarding the hypothesis of convergent evolution. The biomechanical properties of the jaw were then investigated. Incisor in-lever and temporalis out-lever suggested an increase in the velocity of incisor biting, in agreement with observations on various carnivorous and insectivorous rodents. The mechanical advantage related to incisor biting also revealed an increased functional performance in Sub-Antarctic populations, and appears to be an adaptation to catch prey more efficiently. The amount of change involved was larger than expected for a plastic response, suggesting microevolutionary processes were evolved. This study thus denotes some degree of adaptive convergent evolution related to changes in habitat-related changes in dietary items in Sub-Antarctic mice, but only regarding simple, functionally relevant aspects of mandible morphology.


Subject(s)
Biological Evolution , Mandible/anatomy & histology , Mice/anatomy & histology , Adaptation, Biological , Animals , Animals, Wild/anatomy & histology , Antarctic Regions , Diet , Falkland Islands , Indian Ocean Islands , Islands , Phylogeny
8.
PLoS One ; 12(9): e0184015, 2017.
Article in English | MEDLINE | ID: mdl-28886097

ABSTRACT

Brown rats are one of the most widespread urban species worldwide. Despite the nuisances they induce and their potential role as a zoonotic reservoir, knowledge on urban rat populations remains scarce. The main purpose of this study was to characterize an urban brown rat population from Chanteraines park (Hauts-de-Seine, France), with regards to haematology, population genetics, immunogenic diversity, resistance to anticoagulant rodenticides, and community of parasites. Haematological parameters were measured. Population genetics was investigated using 13 unlinked microsatellite loci. Immunogenic diversity was assessed for Mhc-Drb. Frequency of the Y139F mutation (conferring resistance to rodenticides) and two linked microsatellites were studied, concurrently with the presence of anticoagulant residues in the liver. Combination of microscopy and molecular methods were used to investigate the occurrence of 25 parasites. Statistical approaches were used to explore multiple parasite relationships and model parasite occurrence. Eighty-six rats were caught. The first haematological data for a wild urban R. norvegicus population was reported. Genetic results suggested high genetic diversity and connectivity between Chanteraines rats and surrounding population(s). We found a high prevalence (55.8%) of the mutation Y139F and presence of rodenticide residues in 47.7% of the sampled individuals. The parasite species richness was high (16). Seven potential zoonotic pathogens were identified, together with a surprisingly high diversity of Leptospira species (4). Chanteraines rat population is not closed, allowing gene flow and making eradication programs challenging, particularly because rodenticide resistance is highly prevalent. Parasitological results showed that co-infection is more a rule than an exception. Furthermore, the presence of several potential zoonotic pathogens, of which four Leptospira species, in this urban rat population raised its role in the maintenance and spread of these pathogens. Our findings should stimulate future discussions about the development of a long-term rat-control management program in Chanteraines urban park.


Subject(s)
Drug Resistance , Genetics, Population , Parasites , Rodenticides/pharmacology , Animals , Biodiversity , Biomarkers , Blood Cell Count , France , Genetic Variation , Genotype , Geography , Immunogenetic Phenomena , Microsatellite Repeats , Parasites/classification , Parasites/genetics , Rats , Urban Health , Vitamin K Epoxide Reductases/genetics
9.
Oecologia ; 181(3): 795-807, 2016 07.
Article in English | MEDLINE | ID: mdl-26969470

ABSTRACT

Most research on the demography of wild animal populations has focused on characterizing the variation in the mortality of organisms as a function of intrinsic and environmental characteristics. However, such variation in mortality is difficult to relate to functional life history components (e.g. reproduction, dispersal, hibernation) due to the difficulty in monitoring biological processes at a sufficiently fine timescale. In this study, we used a 10-year individual-based data set with an infra-annual timescale to investigate both intra- and inter-annual survival patterns according to intrinsic and environmental covariates in an introduced population of a small hibernating rodent, the Siberian chipmunk. We compared three distinct periods related to particular life history events: spring reproduction, summer reproduction and hibernation. Our results revealed strong interactions between intrinsic and temporal effects. First, survival of male chipmunks strongly decreases during the reproduction periods, while survival is high and equal between sexes during hibernation. Second, the season of birth affects the survival of juveniles during their first hibernation, which does not have long-lasting consequences at the adult stage. Third, at an inter-annual scale, we found that high food resource availability before hibernation and low chipmunk densities specifically favour subsequent winter survival. Overall, our results confirm that the well-known patterns of yearly and inter-individual variation of mortality observed in animals are themselves strongly variable within a given year, suggesting that they are associated with various functional components of the animals' life history.


Subject(s)
Hibernation , Sciuridae , Animals , Demography , Reproduction , Seasons
10.
Proc Biol Sci ; 283(1824)2016 Feb 10.
Article in English | MEDLINE | ID: mdl-26842576

ABSTRACT

By accompanying human travels since prehistorical times, the house mouse dispersed widely throughout the world, and colonized many islands. The origin of the travellers determined the phylogenetic source of the insular mice, which encountered diverse ecological and environmental conditions on the various islands. Insular mice are thus an exceptional model to disentangle the relative role of phylogeny, ecology and climate in evolution. Molar shape is known to vary according to phylogeny and to respond to adaptation. Using for the first time a three-dimensional geometric morphometric approach, compared with a classical two-dimensional quantification, the relative effects of size variation, phylogeny, climate and ecology were investigated on molar shape diversity across a variety of islands. Phylogeny emerged as the factor of prime importance in shaping the molar. Changes in competition level, mostly driven by the presence or absence of the wood mouse on the different islands, appeared as the second most important effect. Climate and size differences accounted for slight shape variation. This evidences a balanced role of random differentiation related to history of colonization, and of adaptation possibly related to resource exploitation.


Subject(s)
Biological Evolution , Mice/anatomy & histology , Mice/physiology , Molar/anatomy & histology , Phylogeny , Animal Distribution , Animals , Atlantic Islands , DNA, Mitochondrial/genetics , Europe , Female , Indian Ocean Islands , Male , Mice/classification , Mice/genetics , Sequence Analysis, DNA
11.
Integr Zool ; 11(3): 214-28, 2016 May.
Article in English | MEDLINE | ID: mdl-26748591

ABSTRACT

Integrative taxonomy, a multi-disciplinary approach adding modern techniques to traditional morphology-based methods (e.g. molecular and morphological criteria), can play an important role in bioinvasion research to identify introduced taxa, discover pathways of introduction and inform authorities to control and prevent future introductions. The present study is the first on introduced populations of Callosciurus, Asiatic tree squirrels, known as potentially invasive species in Europe (Italy, Belgium and France). We combined molecular (mitochondrial DNA markers: CoxI, D-loop) and morphometric analysis on skulls, comparing them to the widest morphological and molecular datasets ever assembled for Callosciurus. Squirrels collected in Italy and Belgium share the same haplotypes and skull characteristics, but are conspicuously different from the French population in Antibes. Genetic data revealed close similarity between French squirrels and Pallas's squirrels, Callosciurus erythraeus, from Taiwan, China. Italian and Belgian squirrels formed an independent taxonomic lineage in genetic analyses, whose taxonomic rank needs further investigation. The morphological and morphometric characteristics of these 2 populations are, however, similar to known specimens assigned to Callosciurus erythraeus. These results may indicate a common origin for the populations found in Belgium and Italy. In contrast, French specimens suggest an independent introduction event of squirrels originating from Asia.


Subject(s)
Classification/methods , Introduced Species , Sciuridae/classification , Sciuridae/genetics , Animals , DNA Barcoding, Taxonomic , DNA, Mitochondrial/genetics , Europe , Sciuridae/anatomy & histology , Sequence Alignment , Skull/anatomy & histology
12.
Parasitol Res ; 114(6): 2069-78, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25724565

ABSTRACT

In mammalian hosts, macroparasite aggregation is highly heterogeneous over space and time and among individuals. While the exact causes of this heterogeneity remain unclear, it has mainly been attributed to individual differences in exposure and susceptibility. Although some extrinsic (e.g., parasite availability) and intrinsic (e.g., sex or age) factors are well known to affect infestation patterns, the joint and possibly interacting effects of these factors are poorly understood. Here, we study the infestation of hard ticks (mainly Ixodes ricinus) in a small rodent, the Siberian chipmunk (Tamias sibiricus), introduced to an oak-hornbeam forest in France. We investigate the seasonal variation in infestation according to the sex, age, birth season (spring-born or summer-born), and body weight of individual hosts while controlling for interannual variability. During the 10-year study period, 3421 tick count events were recorded involving 1017 chipmunks monitored by the capture-mark-recapture procedure. Our results reveal a male-biased parasitism in the Siberian chipmunk, which is not consistent among individuals born in different seasons. This sex bias is observed among spring-born juveniles from July to the beginning of hibernation. For adults, this difference becomes apparent along the reproduction period (May-September) for summer-born adults only. These complex interactions between sex, age, and birth season suggest overall that the seasonal variation of tick load is critically linked to the reproductive behavior of this small ground sciurid.


Subject(s)
Ixodes/physiology , Sciuridae/parasitology , Tick Infestations/parasitology , Age Factors , Animals , Female , France/epidemiology , Male , Seasons , Sex Factors , Tick Infestations/epidemiology
13.
Parasitol Res ; 114(6): 2223-9, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25773184

ABSTRACT

The crested porcupine Hystrix cristata is a large body-sized rodent, occurring in Europe only in the Italian Peninsula, where it may have been introduced in early Medieval times. Its parasite fauna is currently poorly known and limited to few anecdotal observations. We have analyzed the ectoparasite load of 165 crested porcupines from Tuscany and Latium (Central Italy). Both captured and road-killed individuals were checked for fleas and ticks. Overall, only 39 porcupines were infested by four species of ticks and five of fleas. Abundance of ectoparasites was higher in areas with higher habitat richness, with respect to densely wooded areas. The most frequent species was the flea Pulex irritans (25%), whose prevalence peaked in winter probably because of optimal abiotic conditions in the porcupine's den. The remaining species of both hard ticks (Rhipicephalus bursa, Pholeoixodes hexagonus, and Ixodes ventalloi) and fleas (Paraceras melis, Ctenocephalides canis, Dasypsyllus gallinulae, and Hystrichopsylla talpae), all with prevalence lower than 5%, could be due to den sharing with other vertebrates, mainly carnivores such as, e.g., red foxes and badgers. The second most prevalent species was the generalist tick Ixodes ricinus (21%). An adult male-biased parasitism for ticks has been detected, suggesting a possible role of testosterone related immune-depressive effect. The low richness in dominant ectoparasite species, built up by locally acquired generalist taxa, provides support to the allochthonous origin of this rodent in Italy.


Subject(s)
Flea Infestations/veterinary , Ixodes , Porcupines/parasitology , Tick Infestations/veterinary , Animals , Female , Flea Infestations/epidemiology , Flea Infestations/parasitology , Humans , Italy/epidemiology , Male , Seasons , Siphonaptera/classification , Tick Infestations/epidemiology , Tick Infestations/parasitology
14.
PLoS One ; 9(8): e105111, 2014.
Article in English | MEDLINE | ID: mdl-25126848

ABSTRACT

Whether urban parks can maintain viable and self-sustaining populations over the long term is questionable. In highly urbanized landscapes, urban parks could play a role in biodiversity conservation by providing habitat and resources to native species. However, populations inhabiting urban parks are usually small and isolated, leading to increased demographic stochasticity and genetic drift, with expected negative consequences on their viability. Here, we investigated a European red squirrel population located in an urban park close to Paris, France (Parc de Sceaux; 184 ha) to assess its viability. Using mitochondrial D-loop sequences and 13 microsatellite loci, we showed that the population presented high levels of genetic variation and no evidence of inbreeding. The size of the population was estimated at 100-120 individuals based on the comparison of two census techniques, Distance Sampling and Capture-Mark-Recapture. The estimated heterozygosity level and population size were integrated in a Population Viability Analysis to project the likelihood of the population's persistence over time. Results indicate that the red squirrel population of this urban park can be viable on the long term (i.e. 20 years) for a range of realistic demographic parameters (juvenile survival at least >40%) and immigration rates (at least one immigration event every two years). This study highlights that urban parks can be potential suitable refuges for the red squirrel, a locally threatened species across western European countries, provided that ecological corridors are maintained.


Subject(s)
Sciuridae/genetics , Animals , Cities , Endangered Species , Genetic Variation , Inbreeding , Paris , Parks, Recreational , Population Density , Sequence Analysis, DNA
15.
PLoS One ; 9(2): e88002, 2014.
Article in English | MEDLINE | ID: mdl-24505348

ABSTRACT

Introduced hosts populations may benefit of an "enemy release" through impoverishment of parasite communities made of both few imported species and few acquired local ones. Moreover, closely related competing native hosts can be affected by acquiring introduced taxa (spillover) and by increased transmission risk of native parasites (spillback). We determined the macroparasite fauna of invasive grey squirrels (Sciurus carolinensis) in Italy to detect any diversity loss, introduction of novel parasites or acquisition of local ones, and analysed variation in parasite burdens to identify factors that may increase transmission risk for native red squirrels (S. vulgaris). Based on 277 grey squirrels sampled from 7 populations characterised by different time scales in introduction events, we identified 7 gastro-intestinal helminths and 4 parasite arthropods. Parasite richness is lower than in grey squirrel's native range and independent from introduction time lags. The most common parasites are Nearctic nematodes Strongyloides robustus (prevalence: 56.6%) and Trichostrongylus calcaratus (6.5%), red squirrel flea Ceratophyllus sciurorum (26.0%) and Holarctic sucking louse Neohaematopinus sciuri (17.7%). All other parasites are European or cosmopolitan species with prevalence below 5%. S. robustus abundance is positively affected by host density and body mass, C. sciurorum abundance increases with host density and varies with seasons. Overall, we show that grey squirrels in Italy may benefit of an enemy release, and both spillback and spillover processes towards native red squirrels may occur.


Subject(s)
Helminths , Introduced Species , Phthiraptera , Sciuridae/parasitology , Siphonaptera , Animals , Italy
16.
Ticks Tick Borne Dis ; 5(1): 1-6, 2014 Feb.
Article in English | MEDLINE | ID: mdl-24446554

ABSTRACT

The European red squirrel (Sciurus vulgaris) has long been suspected to be a reservoir host of the agents of Lyme borreliosis, in particular B. burgdorferi sensu stricto (s.s.). However, very few data support this hypothesis. Hereafter, we investigated the infections with B. burgdorferi genospecies in road-killed red squirrels collected across France. We also characterized the diversity of hard tick species collected from a subsample of hosts. DNA of B. burgdorferi genospecies were detected and identified from PCR products in ear biopsies using reverse line blot hybridization. Variation in prevalence was investigated accord-ing to biogeographic areas (Mediterranean, Atlantic, Continental, and Alpine), season, sex, relative age, and body mass from 273 squirrels collected 2003­2010. Among the 746 identified tick specimens, no adult was observed, 63% were nymphs, and 37% were larvae all belonging to the species Ixodes ricinus except one nymph identified as I. trianguliceps. Overall, no squirrels of Mediterranean origin and no unweaned juveniles were found infested by hard ticks. Only season explained variation in I. ricinus abundance on squirrels, with more ticks present in spring to summer than in autumn to winter. Squirrels of Mediterranean origin (n = 20) were not found infected with B. burgdorferi sensu-lato (s.l.), which is almost certainly related to the low occurrence of I. ricinus in this region. Based on individuals analyzed in the other regions of France, 11.5% (n = 26) unweaned young harboured B. burgdorferi s.l., which indicates that infection occurred already in the nest. In adults (n = 227), the prevalence of infection with B. burgdorferi s.l. was 27.3%, with 18.9% B. burgdorferi s.s., 11.9% B. afzelii, and 3.5% B. garinii. The season and the body mass, sex, and geographic origin of adults had no effect on the frequency of infection. Infection prevalence of S. vulgaris is among the highest found in rodents in Europe, particularly for B. burgdorferi s.s. supporting the hypothesis that sciurids are particularly suitable hosts for this genospecies.


Subject(s)
Arachnid Vectors/microbiology , Borrelia burgdorferi Group/isolation & purification , Ixodes/microbiology , Lyme Disease/epidemiology , Sciuridae/microbiology , Animals , Borrelia burgdorferi Group/genetics , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , Disease Reservoirs , Female , France/epidemiology , Geography , Humans , Larva , Lyme Disease/parasitology , Male , Nymph , Prevalence , Sciuridae/parasitology
17.
PLoS One ; 8(6): e66167, 2013.
Article in English | MEDLINE | ID: mdl-23840418

ABSTRACT

BACKGROUND: In natural populations, individuals are infected more often by several pathogens than by just one. In such a context, pathogens can interact. This interaction could modify the probability of infection by subsequent pathogens. Identifying when pathogen associations correspond to biological interactions is a challenge in cross-sectional studies where the sequence of infection cannot be demonstrated. METHODOLOGY/PRINCIPAL FINDINGS: Here we modelled the probability of an individual being infected by one and then another pathogen, using a probabilistic model and maximum likelihood statistics. Our model was developed to apply to cross-sectional data, vector-borne and persistent pathogens, and to take into account confounding factors. Our modelling approach was more powerful than the commonly used Chi-square test of independence. Our model was applied to detect potential interaction between Borrelia afzelii and Bartonella spp. that infected a bank vole population at 11% and 57% respectively. No interaction was identified. CONCLUSIONS/SIGNIFICANCE: The modelling approach we proposed is powerful and can identify the direction of potential interaction. Such an approach can be adapted to other types of pathogens, such as non-persistents. The model can be used to identify when co-occurrence patterns correspond to pathogen interactions, which will contribute to understanding how organism communities are assembled and structured. In the long term, the model's capacity to better identify pathogen interactions will improve understanding of infectious risk.


Subject(s)
Arvicolinae/microbiology , Bartonella Infections/veterinary , Bartonella/genetics , Borrelia burgdorferi Group/genetics , Coinfection/veterinary , Lyme Disease/veterinary , Rodent Diseases/microbiology , Algorithms , Animals , Arvicolinae/parasitology , Asymptomatic Infections , Bartonella Infections/microbiology , Coinfection/microbiology , Computer Simulation , Cross-Sectional Studies , Disease Reservoirs , Likelihood Functions , Lyme Disease/microbiology , Models, Biological , Rodentia
18.
PLoS One ; 8(7): e68956, 2013.
Article in English | MEDLINE | ID: mdl-23894381

ABSTRACT

Host-specificity is an intrinsic feature of many bacterial pathogens, resulting from a long history of co-adaptation between bacteria and their hosts. Alpha-proteobacteria belonging to the genus Bartonella infect the erythrocytes of a wide range of mammal orders, including rodents. In this study, we performed genetic analysis of Bartonella colonizing a rodent community dominated by bank voles (Myodes glareolus) and wood mice (Apodemus sylvaticus) in a French suburban forest to evaluate their diversity, their capacity to recombine and their level of host specificity. Following the analysis of 550 rodents, we detected 63 distinct genotypes related to B. taylorii, B. grahamii, B. doshiae and a new B. rochalimae-like species. Investigating the most highly represented species, we showed that B. taylorii strain diversity was markedly higher than that of B. grahamii, suggesting a possible severe bottleneck for the latter species. The majority of recovered genotypes presented a strong association with either bank voles or wood mice, with the exception of three B. taylorii genotypes which had a broader host range. Despite the physical barriers created by host specificity, we observed lateral gene transfer between Bartonella genotypes associated with wood mice and Bartonella adapted to bank voles, suggesting that those genotypes might co-habit during their life cycle.


Subject(s)
Bartonella/genetics , Host Specificity/physiology , Animals , Bartonella/classification , Bartonella/pathogenicity , Bartonella Infections/genetics , Genotype , Mice , Phylogeny , Polymorphism, Genetic/genetics
19.
Parasitol Res ; 112(10): 3527-36, 2013 Oct.
Article in English | MEDLINE | ID: mdl-23873618

ABSTRACT

The Eurasian red squirrel (Sciurus vulgaris) is the only naturally occurring tree squirrel throughout its range. We aim at improving current knowledge on its macroparasite fauna, expecting that it will have a poor parasite diversity because in species that have no sympatric congeners parasite richness should be lower than in hosts sharing their range with several closely related species, where host-switching events and lateral transmission are promoted. We examined gastro-intestinal helminth and ectoparasite communities (excluding mites) of, respectively, 147 and 311 red squirrel roadkills collected in four biogeographic regions in Italy and France. As expected, the macroparasite fauna was poor: we found five species of nematodes and some unidentified cestodes, three fleas, two sucking lice and two hard ticks. The helminth community was dominated by a single species, the oxyurid Trypanoxyuris (Rodentoxyuris) sciuri (prevalence, 87%; mean abundance, 373 ± 65 worms/host). Its abundance varied among seasons and biogeographic regions and increased with body mass in male hosts while decreased in females. The most prevalent ectoparasites were the flea Ceratophyllus (Monopsyllus) sciurorum (28%), whose presence was affected by season, and the generalist tick Ixodes (Ixodes) ricinus that was found only in France (34%). All the other helminths and arthropod species were rare, with prevalence below 10%. However, the first record of Strongyloides robustus, a common nematode of North American Eastern grey squirrels (S. carolinensis), in two red squirrels living in areas where this alien species co-inhabits, deserves further attention, since low parasite richness could result in native red squirrels being particularly vulnerable to parasite spillover.


Subject(s)
Ectoparasitic Infestations/veterinary , Helminthiasis, Animal/parasitology , Helminths/classification , Sciuridae/parasitology , Animals , Drosophila Proteins/classification , Ectoparasitic Infestations/parasitology , Female , Male , Protein Kinases/classification , Siphonaptera/classification , Ticks/classification
20.
PLoS One ; 8(1): e55377, 2013.
Article in English | MEDLINE | ID: mdl-23383170

ABSTRACT

The variation of the composition in species of host communities can modify the risk of disease transmission. In particular, the introduction of a new host species can increase health threats by adding a new reservoir and/or by amplifying the circulation of either exotic or native pathogens. Lyme borreliosis is a multi-host vector-borne disease caused by bacteria belonging to the Borrelia burgdorferi sensu lato complex. It is transmitted by the bite of hard ticks, especially Ixodes ricinus in Europe. Previous studies showed that the Siberian chipmunk, Tamias sibiricus barberi, an introduced ground squirrel in the Forest of Sénart (near Paris, France) was highly infested by I. ricinus, and consequently infected by B. burgdorferi sl. An index of the contribution of chipmunks to the density of infected questing nymphs on the vegetation (i.e., the acarological risk for humans) was compared to that of bank voles (Myodes glareolus) and of wood mice (Apodemus sylvaticus), two known native and sympatric competent reservoir hosts. Chipmunks produced nearly 8.5 times more infected questing nymphs than voles and mice. Furthermore, they contribute to a higher diversity of B. burgdorferi sl genospecies (B. afzelii, B. burgdorferi sensu stricto and B. garinii). The contribution of chipmunks varied between years and seasons, according to tick availability. As T. s. barberi must be a competent reservoir, it should amplify B. burgdorferi sl infection, hence increasing the risk of Lyme borreliosis in humans.


Subject(s)
Borrelia burgdorferi/genetics , Disease Reservoirs/microbiology , Introduced Species , Ixodes/microbiology , Lyme Disease/epidemiology , Lyme Disease/transmission , Sciuridae/microbiology , Tick Infestations/veterinary , Animals , Arvicolinae/microbiology , DNA Primers/genetics , Disease Reservoirs/parasitology , France/epidemiology , Lyme Disease/microbiology , Mice , Murinae/microbiology , Polymerase Chain Reaction , Population Density , Prevalence , RNA, Ribosomal, 16S/genetics , Sciuridae/parasitology , Tick Infestations/epidemiology
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