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1.
Genetika ; 50(9): 1075-83, 2014 Sep.
Article in Russian | MEDLINE | ID: mdl-25735138

ABSTRACT

The phylogenetic relationships among five species of sculpins, including Myoxocephalus stelleri, M. brantii, M. jaok, M. ochotensis, and Megalocottus platycephalus, were estimated from the sequence variability of the mtDNA cytochrome b (cytb) and cytochrome oxidase 1 (CO1) genes. Analysis of the topologies of combined phylogenetic trees showed that all of the morphologically described species from different genera represented monophyletic groups with high support of branch robustness. Haplotypes with different karyotypes from different geographical localities with an intragroup nucleotide diversity of 43% were combined into the M. stelleri clade. All of the species (except for M. stelleri from the Sea of Japan and the Okhotsk Sea coast of the Hokkaido Island) were characterized by relatively low values of the intragroup variation, along with high values of interspecific variation of mtDNA-encoded markers. Studies of the M. stelleri karyotypes using Ag-banding showed that karyotypes of the individuals from the Sea of Japan and Okhotsk differed not only in the number of chromosomes (2n) but also in the number of active nucleolus organizers (NO) and stained NO blocks, calling into question whether they belong to a single species. The observed discrepancy between the phylogenetic topologies and karyological data is discussed in relation to the informative capacity of mtDNA fragments and the phenomenon of intraspecific chromosomal polymorphism.


Subject(s)
DNA, Mitochondrial/genetics , Flatfishes/genetics , Haplotypes , Karyotype , Polymorphism, Genetic , Animals , Cytochromes b/genetics , Electron Transport Complex IV/genetics , Fish Proteins/genetics , Genetic Markers
2.
Genetika ; 48(12): 1389-400, 2012 Dec.
Article in Russian | MEDLINE | ID: mdl-23516900

ABSTRACT

The phylogenetic relationships of Carassius genus subspecies were investigated based on the data of the variability of nucleotide sequences of the mtDNA cytochrome b (cyt b) and control region (CR). Dendrograms constructed based on the BA, ML, NJ, and MP methods revealed five clusters of the congruent topologies that substantially corresponded to geographical localities and taxonomic conception of the C. auratus complex. An analysis of two mtDNA fragment topologies demonstrated that the island forms of Japanese crucian carps C. cuvieri and C. auratus langsdorfii diverged later compared to the divergence of continental C. auratus forms (4.0-4.5 mln years ago, by molecular calibration). Among the continental silver crucian carps, C. a. gibelio forms two clusters corresponding to two phylogroups with a mean uncorrected genetic distance p = 0.044. The genealogical combination of haplotypes with the first C. a. gibelio phylogroup was observed in C. auratus clade. According to the data of mtDNA analysis, these subspecies represent sister lineages with a level of intergroup divergence of p = 0.022-0.036. No genetic differences were observed between diploid (except for the two C. a. gibelio phylogroups) and polyploid C a. auratus, as well as monophyly in polyploid forms. New approaches based on a comparative study of the nuclear markers might help to unravel the origin of gynogenetic forms and phylogenetic relationships within the C. auratus complex.


Subject(s)
Cytochromes b/genetics , DNA, Mitochondrial/genetics , Goldfish/genetics , Locus Control Region/genetics , Animals , Goldfish/classification , Haplotypes , Phylogeny , Polyploidy
3.
Genetika ; 46(7): 974-80, 2010 Jul.
Article in Russian | MEDLINE | ID: mdl-20795502

ABSTRACT

The congruence between molecular markers, identifying the presence of the Y chromosome, and secondary sexual characters was examined in Asian populations of five Pacific salmon species: pink salmon (Oncorhynchus gorbuscha), chum salmon (O. keta), sockeye salmon (O. nerka), chinook salmon (O. tschawytsha), and sima (O. masou). It was demonstrated that in all species examined, the presence or absence of sex-specific molecular markers was to a considerable degree congruent with secondary sexual characters, but in some cases, an incongruence was found. These findings suggested that the mechanism underlying this phenomenon was similar or identical in all species examined. Possible genetic and physiological explanations of this phenomenon are discussed.


Subject(s)
Genetic Markers/genetics , Oncorhynchus/genetics , Sex Characteristics , Animals , Female , Male
4.
Genetika ; 46(11): 1533-43, 2010 Nov.
Article in Russian | MEDLINE | ID: mdl-21261064

ABSTRACT

The congruence between secondary sexual characters and molecular markers, linked to the Y chromosome was examined in Asian populations of five Pacific salmon species of the genus Oncorhynchus. Our results support the existence of discrepancy between secondary sexual characters and sex-linked molecular markers in all species examined, which suggests the existence of similar or identical mechanism responsible for this phenomenon in Pacific salmons. Clinal latitudinal directional variation of the character confirmed the possibility that this phenomenon could be adaptively important, including its importance for regulation of the population number. In addition to natural factors affecting the degree of discrepancy between morphobiological characters and molecular markers in the Pacific salmon populations, anthropogenic factors, in particular intense fishery of certain population or population group, is also important.


Subject(s)
Oncorhynchus/genetics , Animals , Genetic Markers , Oceans and Seas , Phenotype , Population Dynamics , Sex Characteristics , Species Specificity , Y Chromosome
5.
Genetika ; 41(5): 635-45, 2005 May.
Article in Russian | MEDLINE | ID: mdl-15977815

ABSTRACT

Variation of mitochondrial DNA (mtDNA) was examined in nine populations from three lake-river systems of Chukotka and Kamchatka. Significant differences were found between most of the sockeye salmon samples studied. The genetic differences among populations were not high and often did not correlate with the geographical distances between them. The low population divergence is explained by a short time of existence of most of them, having been formed after the recession of the upper Pleistocene glacier. When the populations were grouped according to their spawning biotopes (river or lake), they in general appeared more genetically similar than upon their grouping by geographical location (the lake-river systems). The differences between the river and lake populations in the lake--river systems increased from north to south.


Subject(s)
Genetics, Population , Salmon/genetics , Animals , Russia
6.
Genetika ; 39(12): 1687-92, 2003 Dec.
Article in Russian | MEDLINE | ID: mdl-14964837

ABSTRACT

Variability of three PCR-amplified mtDNA regions was examined in five populations of sockeye salmon from Azabach'e Lake. Eighteen haplotypes were detected in 144 fish. Significant differences were found between seasonal races of sockeye salmon spawning in the lake. The short time of independent divergence between the seasonal races indicates that these races formed independently in each spawning region. No difference in mtDNA between lake samples of early sockeye salmon (subisolates) was revealed, which confirms the existence of gene flow between them. A high level of differences between the sockeye salmon spawning in the lake and spawning in the tributaries of the lake, the Bushuev and Lotnaya rivers, suggests that there were no migration between them during many generations and that the nature of spawning grounds (lake or river) is essential for within species differentiation in this species.


Subject(s)
DNA, Mitochondrial/genetics , Salmon/genetics , Animals , Base Sequence , DNA Primers , Genetic Heterogeneity , Russia
7.
Genetika ; 37(12): 1663-6, 2001 Dec.
Article in Russian | MEDLINE | ID: mdl-11785293

ABSTRACT

Fragments of mtDNA from two greenling species, Hexagrammos octogrammus and H. agrammus, and their possible hybrids were amplified in PCR and examined using RFLP analysis. The inferred sequence difference between the species was 6.6%, which corresponds to about 3 Myr of their divergence. The reproductive contribution of males and females to the hybrids was estimated.


Subject(s)
DNA, Mitochondrial/genetics , Animals , Female , Fishes , Hybridization, Genetic , Male , Polymerase Chain Reaction , Polymorphism, Restriction Fragment Length , Species Specificity
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