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1.
Methods ; 180: 69-78, 2020 08 01.
Article in English | MEDLINE | ID: mdl-32505829

ABSTRACT

We present herein the synthesis of biotin-functionalized polymers (BNAPols) that have been developed for the fixation of membrane proteins (MPs) onto surfaces. BNAPols were synthesized by free-radical polymerization of a tris(hydroxymethyl)acrylamidomethane (THAM)-derived amphiphilic monomer in the presence of a thiol-based transfer agent with an azido group. Then a Huisgen-cycloaddition reaction was performed with Biotin-(PEG)8-alkyne that resulted in formation of the biotinylated polymers. The designed structure of BNAPols was confirmed by NMR spectroscopy, and a HABA/avidin assay was used for estimating the percentage of biotin grafted on the polymer end chain. The colloidal characterization of these biotin-functionalized polymers was done using both dynamic light scattering (DLS) and small angle X-ray scattering (SAXS) techniques. BNAPols were used to stabilize a model G protein-coupled receptor (GPCR), the human Growth Hormone Secretagogue Receptor (GHSR), out of its membrane environment. Subsequent immobilization of the BNAPols:GHSR complex onto a streptavidin-coated surface allowed screening of ligands based on their ability to bind the immobilized receptor. This opens the way to the use of biotinylated NAPols to immobilize functional, unmodified, membrane proteins, providing original sensor devices for multiple applications including innovative ligand screening assays.


Subject(s)
Biotin/chemistry , Polymers/chemistry , Polymers/chemical synthesis , Receptors, G-Protein-Coupled/chemistry , Receptors, Ghrelin/chemistry , Acrylates/chemistry , Biotinylation , Colloids/chemistry , Dynamic Light Scattering , HEK293 Cells , Humans , Magnetic Resonance Spectroscopy , Methylamines/chemistry , Polymerization , Polymers/analysis , Scattering, Small Angle , Streptavidin/chemistry , Sulfhydryl Compounds/chemistry , X-Ray Diffraction
2.
Food Chem ; 208: 258-63, 2016 Oct 01.
Article in English | MEDLINE | ID: mdl-27132848

ABSTRACT

This work focuses on the characterization of the rosmarinic acid (RA)-ß-cyclodextrin (CD) complex in aqueous solution by (1)H NMR (1D- and 2D-ROESY), completed with studies by capillary electrophoresis (CE). From the (1)H NMR data, the stoichiometry of the complex was determined by a Job's plot and the binding constant was estimated from a linear regression (Scott's method). At pH 2.9, the results showed that RA binds CD with a 1:1 stoichiometry and a binding constant Kb of 445 (±53) M(-1) or 465 (±81) M(-1) depending on the CD protons (H-5 or H-3) selected for the evaluation. The Kb value was also calculated from the CD-induced chemical shifts of each RA proton in order to collect information on the structure of the complex. The pH dependence of Kb revealed that the RA carboxylic form displays the highest affinity for CD. An investigation by capillary electrophoresis fully confirmed these results. 2D ROESY analysis provided detailed structural information on the complex and showed a strong correlation between H-3 and H-5 of CD and most RA protons. In conclusion, RA, an efficient phenolic antioxidant from rosemary with a marketing authorization, spontaneously forms a relatively stable inclusion complex with CD in water.


Subject(s)
Cinnamates/chemistry , Depsides/chemistry , Electrophoresis, Capillary/methods , Magnetic Resonance Spectroscopy/methods , beta-Cyclodextrins/chemistry , Protons , Thermodynamics , Rosmarinic Acid
3.
Biophys J ; 109(7): 1483-96, 2015 Oct 06.
Article in English | MEDLINE | ID: mdl-26445449

ABSTRACT

Intrinsically disordered proteins (IDPs) perform their physiological role without possessing a well-defined three-dimensional structure. Still, residual structure and conformational dynamics of IDPs are crucial for the mechanisms underlying their functions. For example, regions of transient secondary structure are often involved in molecular recognition, with the structure being stabilized (or not) upon binding. Long-range interactions, on the other hand, determine the hydrodynamic radius of the IDP, and thus the distance over which the protein can catch binding partners via so-called fly-casting mechanisms. The modulation of long-range interactions also presents a convenient way of fine-tuning the protein's interaction network, by making binding sites more or less accessible. Here we studied, mainly by nuclear magnetic resonance spectroscopy, residual secondary structure and long-range interactions in nonstructural protein 5A (NS5A) from hepatitis C virus (HCV), a typical viral IDP with multiple functions during the viral life cycle. NS5A comprises an N-terminal folded domain, followed by a large (∼250-residue) disordered C-terminal part. Comparing nuclear magnetic resonance spectra of full-length NS5A with those of a protein construct composed of only the C-terminal residues 191-447 (NS5A-D2D3) allowed us to conclude that there is no significant interaction between the globular and disordered parts of NS5A. NS5A-D2D3, despite its overall high flexibility, shows a large extent of local residual (α-helical and ß-turn) structure, as well as a network of electrostatic long-range interactions. Furthermore, we could demonstrate that these long-range interactions become modulated upon binding to the host protein Bin1, as well as after NS5A phosphorylation by CK2. As the charged peptide regions involved in these interactions are well conserved among the different HCV genotypes, these transient long-range interactions may be important for some of the functions of NS5A over the course of the HCV life cycle.


Subject(s)
Viral Nonstructural Proteins/chemistry , Viral Nonstructural Proteins/metabolism , Binding Sites , Escherichia coli , Kinetics , Magnetic Resonance Spectroscopy , Phosphorylation , Protein Conformation , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Scattering, Small Angle , Static Electricity , Viral Nonstructural Proteins/isolation & purification , X-Ray Diffraction , src Homology Domains
4.
Acta Crystallogr F Struct Biol Commun ; 71(Pt 7): 838-46, 2015 Jul.
Article in English | MEDLINE | ID: mdl-26144228

ABSTRACT

The structural and interactive properties of two novel hemifluorinated surfactants, F2H9-ß-M and F4H5-ß-M, the syntheses of which were based on the structure and hydrophobicity of the well known dodecyl-ß-maltoside (DD-ß-M), are described. The shape of their micellar assemblies was characterized by small-angle X-ray scattering and their intermicellar interactions in crystallizing conditions were measured by dynamic light scattering. Such information is essential for surfactant phase-diagram determination and membrane-protein crystallization.


Subject(s)
Dynamic Light Scattering/methods , Membrane Proteins/chemistry , Scattering, Small Angle , Surface-Active Agents/chemistry , X-Ray Diffraction/methods , Crystallization , Membrane Proteins/analysis , Solutions , Surface-Active Agents/analysis
5.
J Membr Biol ; 247(9-10): 1031-41, 2014 Oct.
Article in English | MEDLINE | ID: mdl-25107304

ABSTRACT

The trimeric light-harvesting complexes II (LHCII) of plants and green algae are pigment-protein complexes involved in light harvesting and photoprotection. Different conformational states have been proposed to be responsible for their different functions. At present, detergent-solubilized LHCII is used as a model for the "light-harvesting conformation", whereas the "quenched conformation" is mimicked by LHCII aggregates. However, none of these conditions seem to perfectly reproduce the properties of LHCII in vivo. In addition, several monomeric LHC complexes are not fully stable in detergent. There is thus a need to find conditions that allow analyzing LHCs in vitro in stable and, hopefully, more native-like conformations. Here, we report a study of LHCII, the major antenna complex of plants, in complex with amphipols. We have trapped trimeric LHCII and monomeric Lhcb1 with either polyanionic or non-ionic amphipols and studied the effect of these polymers on the properties of the complexes. We show that, as compared to detergent solutions, amphipols have a stabilizing effect on LHCII. We also show that the average fluorescence lifetime of LHCII trapped in an anionic amphipol is ~30% shorter than in α-dodecylmaltoside, due to the presence of a conformation with 230-ps lifetime that is not present in detergent solutions.


Subject(s)
Photosystem II Protein Complex/chemistry , Photosystem II Protein Complex/ultrastructure , Polymers/chemistry , Propylamines/chemistry , Spectrometry, Fluorescence/methods , Surface-Active Agents/chemistry , Animals , Humans , Hydrophobic and Hydrophilic Interactions , Protein Conformation , Solubility , Solutions
6.
J Membr Biol ; 247(9-10): 925-40, 2014 Oct.
Article in English | MEDLINE | ID: mdl-25086771

ABSTRACT

Specific, tight-binding protein partners are valuable helpers to facilitate membrane protein (MP) crystallization, because they can i) stabilize the protein, ii) reduce its conformational heterogeneity, and iii) increase the polar surface from which well-ordered crystals can grow. The design and production of a new family of synthetic scaffolds (dubbed αReps, for "artificial alpha repeat protein") have been recently described. The stabilization and immobilization of MPs in a functional state are an absolute prerequisite for the screening of binders that recognize specifically their native conformation. We present here a general procedure for the selection of αReps specific of any MP. It relies on the use of biotinylated amphipols, which act as a universal "Velcro" to stabilize, and immobilize MP targets onto streptavidin-coated solid supports, thus doing away with the need to tag the protein itself.


Subject(s)
Cell Membrane/chemistry , Membrane Proteins/chemistry , Peptide Library , Peptides/chemistry , Protein Interaction Mapping/methods , Surface-Active Agents/chemistry , Hydrophobic and Hydrophilic Interactions , Membrane Proteins/analysis , Protein Binding , Protein Transport , Solubility , Tissue Scaffolds/chemistry
7.
Colloids Surf B Biointerfaces ; 113: 384-93, 2014 Jan 01.
Article in English | MEDLINE | ID: mdl-24121081

ABSTRACT

The work reported herein deals with the evaluation of the antioxidant properties of bitailed amphiphilic α-phenyl-N-tert-butylnitrone derivatives (BPBNs) towards oxidation of an unsaturated lipid, the 1,2-dilinoleoyl-sn-glycero-3-phosphocholine (DLoPC). Oxidation was induced either by UV light irradiation or radical initiators, i.e. the water soluble AAPH and the Fenton reaction, and the antioxidant evaluation was carried out using two biomimetic systems, namely Langmuir monolayers and large unilamellar vesicles. Measurement of the molecular area and the membrane fluidity of pure nitrone monolayers before and after UV-irradiation demonstrated the better stability and antioxidant properties of B17PBN, the derivative with two C17H35 alkyl chains, compared to its analogue B11PBN with two C11H23 alkyl chains. At only 5% molar ratio of nitrone in mixed DLoPC/nitrone monolayers, a complete inhibition of the molecular area decrease was observed for B17PBN whereas B11PBN showed lower protection. The oxidation of mixed DLoPC/nitrones large unilamellar vesicles in the presence of free radicals arising from AAPH decomposition or Fenton reaction was assessed by measuring lipid conjugated dienes and thiobarbituric acid reactive substances on the whole series of nitrone, i.e. C11-, C13-, C15- and C17-based compounds. Compared to the saturated 1,2-dimyristoyl-sn-glycero-3-phosphocholine, all bitailed amphiphilic nitrones were able to decrease conjugated dienes and TBARS in both oxidative paradigms, demonstrating therefore antioxidant property. The inhibition of phospholipids oxidation was increased when increasing the concentration of nitrone with the two B11PBN and B13PBN derivatives exhibiting higher potency. This study underlines the importance in the choice of a model membrane system when evaluating the potency of antioxidants against lipid oxidation.


Subject(s)
Antioxidants/chemistry , Biomimetics/methods , Membranes, Artificial , Antioxidants/chemical synthesis , Liposomes/chemistry , Nitrogen Oxides/chemistry
8.
J Phys Chem B ; 117(29): 8770-81, 2013 Jul 25.
Article in English | MEDLINE | ID: mdl-23806126

ABSTRACT

Small angle X-ray scattering (SAXS) experiments are performed on two non-ionic surfactants, the dodecyl ß-maltoside (DDßM) and the propyl(bi)cyclohexyl α-maltoside (PCCαM), a maltoside derivative containing a rigid bicyclohexyl group as hydrophobic chain, in order to compare the influence of both hydrophobic moiety structure and anomeric form on micelle form factors and intermicellar interactions relevant for membrane protein crystallization. Density and refractive index measurements were performed in order to determine volumetric and optical properties of surfactants, essential for determination of micelle molar masses by both SAXS and SEC-MALLS. SAXS form factors were analyzed by Guinier approximation and inverse Fourier transformation, to obtain the radius of gyration (RG) and the pair distribution function (P(r)) of each surfactant. Form factor model fitting was also performed to describe the shape and the assembly of both surfactant micelles. Finally, second virial coefficients were measured at different percentages of polyethylene glycol 3350, in order to correlate surfactant intermicellar interactions and RC-LH1-PufX phase diagram. It is thus found that while size, shape, and dimensions of micelles are slightly similar for both surfactants, their molar mass and aggregation number differ significantly. PCCαM are more densely packed than DDßM, which reflects (1) an increase in van der Waals contacts between PCCαM hydrophobic chains in the micelle bulk and (2) a supplementary intermicellar attraction compared to DDßM. Finally addition of PEG, which induces a depletion attraction, decreases the solubility of the RC-LH1-PufX complex in PCCαM.


Subject(s)
Light-Harvesting Protein Complexes , Micelles , Rhodobacter/chemistry , Rhodobacter/metabolism , Hydrophobic and Hydrophilic Interactions , Light-Harvesting Protein Complexes/chemistry , Light-Harvesting Protein Complexes/metabolism , Models, Molecular , Phase Transition , Surface-Active Agents/chemistry , Water/chemistry
9.
J Chromatogr A ; 1281: 135-41, 2013 Mar 15.
Article in English | MEDLINE | ID: mdl-23398993

ABSTRACT

The hydrophobic nature of membrane proteins (MPs) necessitates the use of detergents for their extraction, solubilization and purification. Because the concentration of amphiphiles is crucial in the crystallization process, detergent quantification is essential to routine analysis. Here we describe a quantitative high-performance thin-layer chromatography (HPTLC) method we developed for the detection of small quantities of detergent bound to solubilized MPs. After optimization of aqueous deposit conditions, we show that most detergents widely used in membrane protein crystallography display distinctive mobilities in a mixture of dichloromethane, methanol and acetic acid 32:7.6:0.4 (v/v/v). Migration and derivatization conditions were optimized with n-dodecyl-ß-D-maltoside (DDM), the most popular detergent for membrane protein crystallization. A linear calibration curve very well fits our data from 0.1 to 1.6 µg of DDM in water with a limit of detection of 0.05 µg. This limit of detection is the best achieved to date for a routine detergent assay, being not modified by the addition of NaCl, commonly used in protein buffers. With these chromatographic conditions, no prior treatment is required to assess the quantities of detergent bound to purified MPs, thus enabling the quantification of close structure detergents via a single procedure. This HPTLC method, which is fast and requires low sample volume, is fully suitable for routine measurements.


Subject(s)
Chromatography, High Pressure Liquid/methods , Chromatography, Thin Layer/methods , Detergents/analysis , Surface-Active Agents/analysis , Calibration , Cell Biology , Detergents/chemistry , Glucosides/analysis , Glucosides/chemistry , Limit of Detection , Osmolar Concentration , Surface-Active Agents/chemistry
10.
FEBS J ; 280(4): 1051-63, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23253866

ABSTRACT

The ATP-sensitive potassium (K(ATP)) channel is a hetero-octameric complex that links cell metabolism to membrane electrical activity in many cells, thereby controlling physiological functions such as insulin release, muscle contraction and neuronal activity. It consists of four pore-forming Kir6.2 and four regulatory sulfonylurea receptor (SUR) subunits. SUR2B serves as the regulatory subunit in smooth muscle and some neurones. An integrative approach, combining electron microscopy and homology modelling, has been used to obtain information on the structure of this large (megadalton) membrane protein complex. Single-particle electron microscopy of purified SUR2B tethered to a lipid monolayer revealed that it assembles as a tetramer of four SUR2B subunits surrounding a central hole. In the absence of an X-ray structure, a homology model for SUR2B based on the X-ray structure of the related ABC transporter Sav1866 was used to fit the experimental images. The model indicates that the central hole can readily accommodate the transmembrane domains of the Kir tetramer, suggests a location for the first transmembrane domains of SUR2B (which are absent in Sav1866) and suggests the relative orientation of the SUR and Kir6.2 subunits.


Subject(s)
ATP-Binding Cassette Transporters/ultrastructure , Potassium Channels, Inwardly Rectifying/ultrastructure , Receptors, Drug/ultrastructure , ATP-Binding Cassette Transporters/chemistry , Animals , Models, Molecular , Potassium Channels, Inwardly Rectifying/chemistry , Protein Multimerization , Protein Structure, Quaternary , Protein Structure, Tertiary , Protein Subunits/chemistry , Rats , Receptors, Drug/chemistry , Sf9 Cells , Structural Homology, Protein , Sulfonylurea Receptors
11.
Biochim Biophys Acta ; 1818(3): 798-805, 2012 Mar.
Article in English | MEDLINE | ID: mdl-22226924

ABSTRACT

Structural studies of membrane protein are still challenging due to several severe bottlenecks, the first being the overproduction of well-folded proteins. Several expression systems are often explored in parallel to fulfil this task, or alternately prokaryotic analogues are considered. Although, mitochondrial carriers play key roles in several metabolic pathways, only the structure of the ADP/ATP carrier purified from bovine heart mitochondria was determined so far. More generally, characterisations at the molecular level are restricted to ADP/ATP carrier or the uncoupling protein UCP1, another member of the mitochondrial carrier family, which is abundant in brown adipose tissues. Indeed, mitochondrial carriers have no prokaryotic homologues and very few efficient expression systems were described so far for these proteins. We succeeded in producing UCP1 using a cell free expression system based on E. coli extracts, in quantities that are compatible with structural approaches. The protein was synthesised in the presence of a fluorinated surfactant, which maintains the protein in a soluble form. Further biochemical and biophysical analysis such as size exclusion chromatography, circular dichroism and thermal stability, of the purified protein showed that the protein is non-aggregated, monodisperse and well-folded.


Subject(s)
Hydrocarbons, Fluorinated/chemistry , Ion Channels/biosynthesis , Ion Channels/chemistry , Mitochondrial Proteins/biosynthesis , Mitochondrial Proteins/chemistry , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Surface-Active Agents/chemistry , Animals , Cattle , Cell-Free System/chemistry , Escherichia coli/chemistry , Gene Expression , Ion Channels/genetics , Ion Channels/isolation & purification , Mitochondrial Membranes/chemistry , Mitochondrial Membranes/metabolism , Mitochondrial Proteins/genetics , Mitochondrial Proteins/isolation & purification , Rats , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Uncoupling Protein 1
12.
Mol Membr Biol ; 28(3): 171-81, 2011 Apr.
Article in English | MEDLINE | ID: mdl-21314479

ABSTRACT

Mixed protein-surfactant micelles are used for in vitro studies and 3D crystallization when solutions of pure, monodisperse integral membrane proteins are required. However, many membrane proteins undergo inactivation when transferred from the biomembrane into micelles of conventional surfactants with alkyl chains as hydrophobic moieties. Here we describe the development of surfactants with rigid, saturated or aromatic hydrocarbon groups as hydrophobic parts. Their stabilizing properties are demonstrated with three different integral membrane proteins. The temperature at which 50% of the binding sites for specific ligands are lost is used as a measure of stability and dodecyl-ß-D-maltoside ('C12-b-M') as a reference for conventional surfactants. One surfactant increased the stability of two different G protein-coupled receptors and the human Patched protein receptor by approximately 10°C compared to C12-b-M. Another surfactant yielded the highest stabilization of the human Patched protein receptor compared to C12-b-M (13°C) but was inferior for the G protein-coupled receptors. In addition, one of the surfactants was successfully used to stabilize and crystallize the cytochrome b(6 )f complex from Chlamydomonas reinhardtii. The structure was solved to the same resolution as previously reported in C12-b-M.


Subject(s)
Crystallization/methods , Membrane Proteins/chemistry , Surface-Active Agents/chemistry , Water/chemistry , Chlamydomonas reinhardtii/chemistry , Cytochrome b6f Complex/chemistry , Glucosides/chemistry , Humans , Patched Receptors , Receptors, Cell Surface/chemistry , Receptors, G-Protein-Coupled/chemistry , Solubility
13.
J Med Chem ; 53(13): 4849-61, 2010 Jul 08.
Article in English | MEDLINE | ID: mdl-20527971

ABSTRACT

Our group has demonstrated that the amphiphilic character of alpha-phenyl-N-tert-butyl nitrone based agents is a key feature in determining their bioactivity and protection against oxidative toxicity. In this work, we report the synthesis of a new class of amphiphilic amide nitrones. Their hydroxyl radical scavenging activity and radical reducing potency were shown using ABTS competition and ABTS(+) reduction assays, respectively. Cyclic voltammetry was used to investigate their redox behavior, and the effects of the substitution of the PBN on the charge density of the nitronyl atoms, the electron affinity, and the ionization potential were computationally rationalized. The protective effects of amphiphilic amide nitrones in cell cultures exposed to oxidotoxins greatly exceeded those exerted by the parent compound PBN. They decreased electron and proton leakage as well as hydrogen peroxide formation in isolated rat brain mitochondria at nanomolar concentration. They also significantly enhanced mitochondrial membrane potential. Finally, dopamine-induced inhibition of complex I activity was antagonized by pretreatment with these agents. These findings indicate that amphiphilic amide nitrones are much more than just radical scavenging antioxidants but may act as a new class of bioenergetic agents directly on mitochondrial electron and proton transport.


Subject(s)
Brain/metabolism , Mitochondria/metabolism , Nitrogen Oxides/chemistry , Nitrogen Oxides/pharmacology , Oxidative Stress/drug effects , Surface-Active Agents/pharmacology , Animals , Benzothiazoles/chemistry , Brain/drug effects , Free Radical Scavengers/chemical synthesis , Free Radical Scavengers/chemistry , Free Radical Scavengers/pharmacology , Hydrogen Peroxide/chemistry , Magnetic Resonance Spectroscopy , Membrane Potential, Mitochondrial/drug effects , Mitochondria/drug effects , Nitrogen Oxides/chemical synthesis , Optical Rotation , Oxidation-Reduction , Rats , Rats, Sprague-Dawley , Spectrometry, Mass, Electrospray Ionization , Sulfonic Acids/chemistry , Surface-Active Agents/chemical synthesis , Surface-Active Agents/chemistry
14.
Biochim Biophys Acta ; 1798(6): 1100-10, 2010 Jun.
Article in English | MEDLINE | ID: mdl-20188061

ABSTRACT

Smoothened is a member of the G-protein coupled receptor (GPCR) family responsible for the transduction of the Hedgehog signal to the intracellular effectors of the Hedgehog signaling pathway. Aberrant regulation of this receptor is implicated in many cancers but also in neurodegenerative disorders. Despite the pharmacological relevance of this receptor, very little is known about its functional mechanism and its physiological ligand. In order to characterize this receptor for basic and pharmacological interests, we developed the expression of human Smoothened in the yeast Saccharomyces cerevisiae and Smoothened was then purified. Using Surface Plasmon Resonance technology, we showed that human Smoothened was in a native conformational state and able to interact with its antagonist, the cyclopamine, both at the yeast plasma membrane and after purification. Thermostability assays on purified human Smoothened showed that this GPCR is relatively stable in the classical detergent dodecyl-beta-d-maltoside (DDM). The fluorinated surfactant C(8)F(17)TAC, which has been proposed to be less aggressive towards membrane proteins than classical detergents, increased Smoothened thermostability in solution. Moreover, the replacement of a glycine by an arginine in the third intracellular loop of Smoothened coupled to the use of the fluorinated surfactant C(8)F(17)TAC during the mutant purification increased Smoothened thermostability even more. These data will be very useful for future crystallization assays and structural characterization of the human receptor Smoothened.


Subject(s)
Receptors, G-Protein-Coupled/chemistry , Amino Acid Substitution , Glucosides/chemistry , Hedgehog Proteins/chemistry , Hedgehog Proteins/genetics , Humans , Mutation, Missense , Neoplasms/genetics , Neoplasms/metabolism , Neurodegenerative Diseases/genetics , Neurodegenerative Diseases/metabolism , Protein Stability , Receptors, G-Protein-Coupled/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Saccharomyces cerevisiae/genetics , Smoothened Receptor , Surface Plasmon Resonance , Surface-Active Agents/chemistry , Veratrum Alkaloids/chemistry
15.
J Bioenerg Biomembr ; 41(4): 349-60, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19821035

ABSTRACT

Loss of stability and integrity of large membrane protein complexes as well as their aggregation in a non-lipidic environment are the major bottlenecks to their structural studies. We have tested C(12)H(25)-S-poly-Tris-(hydroxymethyl)acrylamidomethane (H(12)-TAC) among many other detergents for extracting the yeast F(1)F(0) ATP-synthase. H(12)-TAC was found to be a very efficient detergent for removing the enzyme from mitochondrial membranes without altering its sensitivity towards specific ATP-synthase inhibitors. This extracted enzyme was then solubilized by either dodecyl maltoside (DDM), H(12)-TAC or fluorinated surfactants such as C(2)H(5)-C(6)F(12)-C(2)H(4)-S-poly-Tris-(hydroxymethyl)acrylamidomethane (H(2)F(6)-TAC) or C(6)F(13)-C(2)H(4)-S-poly-Tris-(hydroxymethyl)acrylamidomethane (F(6)-TAC), two surfactants exhibiting a comparable polar head to H(12)-TAC but bearing a fluorinated hydrophobic tail. Preparations from enzymes purified in the presence of H(12)-TAC were found to be more adapted for AFM imaging than ATP-synthase purified with DDM. Keeping H(12)-TAC during the Ni-NTA IMAC purification step or replacing it by DDM at low concentrations did not however allow preserving enzyme activity, while fluorinated surfactants H(2)F(6)-TAC and F(6)-TAC were found to enhance enzyme stability and integrity as indicated by sensitivity towards inhibitors. ATPase specific activity was higher with F(6)-TAC than with H(2)F(6)-TAC. When enzymes were mixed with egg phosphatidylcholine, ATP-synthases purified in the presence of H(2)F(6)-TAC or F(6)-TAC were more stable upon time than the DDM purified enzyme. Furthermore, in the presence of lipids, an activation of ATP-synthases was observed that was transitory for enzymes purified with DDM, but lasted for weeks for ATP-synthases isolated in the presence of molecules with Tris polyalcoholic moieties. Relipidated enzymes prepared with fluorinated surfactants remained highly sensitive towards inhibitors, even after 6 weeks.


Subject(s)
Acrylamides/chemistry , Chemical Fractionation/methods , Mitochondrial Membranes/chemistry , Mitochondrial Membranes/enzymology , Mitochondrial Proton-Translocating ATPases/chemistry , Mitochondrial Proton-Translocating ATPases/isolation & purification , Surface-Active Agents/chemistry , Fluorine/chemistry , Hydrogen/chemistry
16.
Biochim Biophys Acta ; 1788(9): 1813-21, 2009 Sep.
Article in English | MEDLINE | ID: mdl-19463780

ABSTRACT

The Sonic Hedgehog (Shh) signalling pathway plays an important role both in embryonic development and in adult stem cell function. Inappropriate regulation of this pathway is often due to dysfunction between two membrane receptors Patched (Ptc) and Smoothened (Smo), which lead to birth defects, cancer or neurodegenerative diseases. However, little is known about Ptc, the receptor of the Shh protein, and the way Ptc regulates Smo, the receptor responsible for the transduction of the signal. To develop structure-function studies of these receptors, we expressed human Ptc (hPtc) in the yeast Saccharomyces cerevisiae. We demonstrated that hPtc expressed in a yeast membrane fraction is able to interact with its purified ligand Shh, indicating that hPtc is produced in yeast in its native conformational state. Using Surface Plasmon Resonance technology, we showed that fluorinated surfactants preserve the ability of hPtc to interact with its ligand after purification. This is the first report on the heterologous expression and the purification of a native and stable conformation of the human receptor Ptc. This work will allow the scale-up of hPtc production enabling its biochemical characterization, allowing the development of new therapeutic approaches against diseases induced by Shh signalling dysfunction.


Subject(s)
Cell Membrane/metabolism , Hedgehog Proteins/physiology , Receptors, Cell Surface/chemistry , Receptors, G-Protein-Coupled/chemistry , Hedgehog Proteins/biosynthesis , Humans , Patched Receptors , Patched-1 Receptor , Peptide Fragments/biosynthesis , Protein Conformation , Receptors, Cell Surface/isolation & purification , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Smoothened Receptor , Surface Plasmon Resonance
17.
Langmuir ; 24(12): 6072-8, 2008 Jun 17.
Article in English | MEDLINE | ID: mdl-18494510

ABSTRACT

Handling nanometer-thick films and nano-objects remains a challenge. Applying self-assembly properties of surfactants to nanomaterials manipulation may be the key to the fast, easy, cost-effective growth of 2D and 3D nanostructures. Newton black films (NBFs) are self-assembled bilayers of surfactant, well-organized, but fragile objects. To render such films amenable to practical applications, it is necessary to find ways to transfer them onto solid substrates. A method developed recently to transfer NBFs onto a solid substrate while preserving their molecular organization (Benattar, J.-J.; Nedyalkov, M.; Lee, F. K.; Tsui, O. K. C. Angew. Chem., Int. Ed. 2006, 45, 4186) is broadened here to different surfaces. The method requires hydrophobic, planar, atomically smooth surfaces. This study presents the adhesion of a fluorinated NBF surfactant onto hydrophobically treated silica and silicon surfaces (with etching or silanization). The structures of the free-standing film, bare substrates, and transferred films are investigated using X-ray reflectivity. The homogeneity of the surfaces before and after bilayer deposition is examined by atomic force microscopy (AFM). Multiple transfers are tested and described for the future development of more complex architectures involving many surfactant layers and inserted nanosized objects.


Subject(s)
Lipid Bilayers/chemistry , Surface-Active Agents/chemistry , Crystallography, X-Ray/methods , Equipment Design , Fluorine/chemistry , Lipids/chemistry , Lipoproteins , Microscopy, Atomic Force , Molecular Conformation , Nanoparticles/chemistry , Nanotechnology/methods , Silicon/chemistry , Substrate Specificity , Surface Properties , X-Rays
18.
Chem Biodivers ; 4(9): 2253-67, 2007 Sep.
Article in English | MEDLINE | ID: mdl-17886845

ABSTRACT

An amphiphilic alpha-phenyl-N-(tert-butyl) nitrone (PBN) derivative, N-{[4-(lactobionamido)methyl]benzylidene}-1,1-dimethyl-2-(octylsulfanyl)ethylamine N-oxide (LPBNSH), newly synthesized from its original form PBN in hopes of clinical use, was intraperitoneally administered to Long-Evans Cinnamon (LEC) rats every 2 days at the concentrations of 0.1, 0.5, 1.0, and 2.0 mg/kg. We found that LPBNSH protected against copper-induced hepatitis with jaundice in LEC rats at concentrations of 0.1 and 0.5 mg/kg, which were extremely low compared with that of PBN. It also effectively prevented the loss of body weight, reduced the death rate, and suppressed the increase in serum aspartate aminotransferase and alanine aminotransferase values arising from fulminant hepatitis with jaundice at the same concentrations. Similar results were observed when PBN was administered at the concentration of 150 mg/kg. Immunohistochemical analysis of 8-hydroxy-2'-deoxyguanosine and measurement of thiobarbituric acid-reactive substances in the liver showed that LPBNSH largely suppressed the formation of these oxidative products at same concentrations. No difference in the abnormal accumulation of copper in the liver between the LPBNSH administered and control groups was observed. From these results, it was concluded that LPBNSH exhibited liver-protective effects against fulminant hepatitis with jaundice at ca. 1/1000, 500 the molar concentration of PBN and, therefore, was clinically promising.


Subject(s)
Antioxidants/therapeutic use , Chemical and Drug Induced Liver Injury/prevention & control , Copper/toxicity , Disaccharides/therapeutic use , Imines/therapeutic use , Liver Failure, Acute/prevention & control , 8-Hydroxy-2'-Deoxyguanosine , Animals , Chemical and Drug Induced Liver Injury/pathology , Copper/analysis , Cyclic N-Oxides/therapeutic use , Deoxyguanosine/analogs & derivatives , Deoxyguanosine/analysis , Immunohistochemistry , Liver/chemistry , Liver/pathology , Liver Failure, Acute/chemically induced , Liver Failure, Acute/pathology , Male , Rats , Rats, Inbred LEC , Thiobarbituric Acid Reactive Substances/analysis
19.
J Med Chem ; 50(17): 3976-9, 2007 Aug 23.
Article in English | MEDLINE | ID: mdl-17649989

ABSTRACT

A new series of hydrophilic, lipophilic, and amphiphilic alpha-phenyl-N-tert-butylnitrone (PBN) derivatives were synthesized to explore the relationship between their hydrophilic-lipophilic properties and antioxidant potency. Very potent protective effects of amphiphilic lactobionamide and tris(hydroxymethyl)aminomethane PBN derivatives were observed in mitochondrial preparations, in cell cultures, and in rotifers exposed to unspecific and mitochondria targeted oxidotoxins.


Subject(s)
Antioxidants/chemical synthesis , Cyclic N-Oxides/chemistry , Nitrogen Oxides/chemical synthesis , Animals , Antioxidants/chemistry , Antioxidants/pharmacology , Cells, Cultured , Disaccharides/chemical synthesis , Disaccharides/chemistry , Disaccharides/pharmacology , Drug Design , Electron Transport Complex I/metabolism , In Vitro Techniques , Nitrogen Oxides/chemistry , Nitrogen Oxides/pharmacology , Rats , Rotifera/drug effects , Structure-Activity Relationship , Submitochondrial Particles/drug effects , Submitochondrial Particles/metabolism , Tromethamine/analogs & derivatives , Tromethamine/chemical synthesis , Tromethamine/chemistry , Tromethamine/pharmacology
20.
FEBS Lett ; 581(10): 1944-50, 2007 May 15.
Article in English | MEDLINE | ID: mdl-17445804

ABSTRACT

Structural characterization of membrane proteins is hampered by the instability of the isolated proteins in detergent solutions. Here, we describe a new class of phospholipid-like surfactants that stabilize the G protein-coupled receptor, BLT1. These compounds, called C(13)U(9), C(13)U(19), C(15)U(25) and C(17)U(16), were synthesized by radical polymerization of Tris(hydroxymethyl) acrylamidomethane in the presence of thioglycerol, first endowed with two hydrocarbon chains with variable lengths (13-17 carbon atoms), as transfer reagent. C(13)U(19), C(17)U(16) or C(15)U(25) significantly enhanced the stability of BLT1 in solution compared to what was obtained with common detergents. These molecules therefore represent a promising step towards the structural characterization of BLT1 and possibly other membrane proteins.


Subject(s)
Receptors, Leukotriene B4/chemistry , Receptors, Leukotriene B4/metabolism , Acrylamides/chemistry , Dimerization , Humans , Leukotriene B4/metabolism , Ligands , Protein Folding , Solutions/chemistry , Surface-Active Agents/chemistry , Thermodynamics , Time Factors
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