Oxidation in the complementarity-determining regions differentially influences the properties of therapeutic antibodies.

Therapeutic antibodies can undergo a variety of chemical modification reactions in vitro. Depending on the site of modification, either antigen binding or Fc-mediated functions can be affected. Oxidation of tryptophan residues is one of the post-translational modifications leading to altered antibody functionality. In this study, we examined the structural and functional properties of a therapeutic antibody construct and 2 affinity matured variants thereof. Two of the 3 antibodies carry an oxidation-prone tryptophan residue in the complementarity-determining region of the VL domain. We demonstrate the differences in the stability and bioactivity of the 3 antibodies, and reveal differential degradation pathways for the antibodies susceptible to oxidation.

Sampling, storage, and analysis of C2-C7 non-methane hydrocarbons from the US National Oceanic and Atmospheric Administration Cooperative Air Sampling Network glass flasks.

An analytical technique was developed to analyze light non-methane hydrocarbons (NMHC), including ethane, propane, iso-butane, n-butane, iso-pentane, n-pentane, n-hexane, isoprene, benzene and toluene from whole air samples collected in 2.5l-glass flasks used by the National Oceanic and Atmospheric Administration, Earth System Research Laboratory, Global Monitoring Division (NOAA ESRL GMD, Boulder, CO, USA) Cooperative Air Sampling Network. This method relies on utilizing the remaining air in these flasks (which is at below-ambient pressure at this stage) after the completion of all routine greenhouse gas measurements from these samples. NMHC in sample aliquots extracted from the flasks were preconcentrated with a custom-made, cryogen-free inlet system and analyzed by gas chromatography (GC) with flame ionization detection (FID). C2-C7 NMHC, depending on their ambient air mixing ratios, could be measured with accuracy and repeatability errors of generally < or =10-20%. Larger deviations were found for ethene and propene. Hexane was systematically overestimated due to a chromatographic co-elution problem. Saturated NMHC showed less than 5% changes in their mixing ratios in glass flask samples that were stored for up to 1 year. In the same experiment ethene and propene increased at approximately 30% yr(-1). A series of blank experiments showed negligible contamination from the sampling process and from storage (<10 pptv yr(-1)) of samples in these glass flasks. Results from flask NMHC analyses were compared to in-situ NMHC measurements at the Global Atmospheric Watch station in Hohenpeissenberg, Germany. This 9-months side-by-side comparison showed good agreement between both methods. More than 94% of all data comparisons for C2-C5 alkanes, isoprene, benzene and toluene fell within the combined accuracy and precision objectives of the World Meteorological Organization Global Atmosphere Watch (WMO-GAW) for NMHC measurements.

Evaluation of solid adsorbent materials for cryogen-free trapping-gas chromatographic analysis of atmospheric C2-C6 non-methane hydrocarbons.

Nine commercial solid adsorbent materials (in order of decreasing surface area: Carboxen 1000, Carbosieve S III, molecular sieve 5A, molecular sieve 4A, silica gel, Carboxen 563, activated alumina, Carbotrap and Carboxen 1016) were investigated for their ability to trap and release C2-C6 non-methane hydrocarbons (NMHCs) in atmospheric samples for subsequent thermal desorption gas chromatography-flame ionization detection analysis (GC-FID). Recovery rates for 23 NMHCs and methyl chloride (CH3Cl) were determined. A microtrap filled with the three adsorbents Carbosieve S III, Carboxen 563 and Carboxen 1016 was found to allow for the analysis of the widest range of target analytes. A detection limit of approximately 3pptC [parts per trillion (carbon)] in a 1l air sample and a linear response over a wide range of volatilities and sample volumes was determined for this configuration. Water vapor in the sample air was found to causes interference in trapping and subsequent chromatographic analysis of light NMHCs. A Peltier-cooled, regenerable water trap inserted into the sample flow path was found to mitigate these problems and to allow quantitative and reproducible results for all analytes at all tested humidity conditions.

Analysis of atmospheric sesquiterpenes: sampling losses and mitigation of ozone interferences.

Atmospheric standards containing parts-per-billion levels of 14 semivolatile hydrocarbon compounds, including eight sesquiterpenes (SQTs) (longipinene, alpha-copaene, isolongifolene, alpha-cedrene, trans-caryophyllene, aromadendrene, alpha-humulene, delta-cadinene), two oxidized sesquiterpenoids (cisnerolidol, trans-nerolidol), one biogenic ketone (geranylacetone) and three aromatic compounds (1,3,5-triisopropylbenzene, diphenylmethane, nonylbenzene), were collected onto four solid adsorbent materials at increasing ozone mixing ratios (0-100 ppbv 03) for analysis by thermodesorption-gas chromatography. Substantial sampling losses of up to >90% were found for the most reactive SQT, even at the lowest ozone level investigated of 20 ppbv. Loss rates from the ozone-SQT reaction were used to derive estimates of gas-phase ozone reaction rate constants for longipinene, alpha-copaene, isolongifolene, geranylacetone, aromadendrene, delta-cadinene, cis-nerolidol, and transnerolidol. Three different ozone mitigation techniques were investigated to prevent these sampling losses. These strategies included (a) placing glass fiber filters impregnated with sodium thiosulfate (Na2S2O3) into the sampling line, (b) titration of ozone in the sampling stream with nitric oxide (NO), and (c) catalytically removing ozone with a commercially available manganese dioxide (MnO2) catalyst. All three techniques reduced ozone-mixing ratios from 100 ppbv to <0.6 ppbv at sampling flow rates of 1 L min(-1). When the Na2S2O3 filters and the NO-titration techniques were applied, SQT loss rates decreased from 25-60% to 0-5% for most SQT compounds and from >90% to approximately 10-50% for the two most reactive compounds at ozone mixing ratios of up to 100 ppbv. The commercial manganese dioxide scrubber, however, caused complete analyte losses (>98%) even at 0 ppbv ozone. These results underline the need and present applicable techniques for removal of ozone in air samples for SQT analysis by solid adsorption techniques.

Calibration system and analytical considerations for quantitative sesquiterpene measurements in air.

Sesquiterpenes (C15H24, SQT) are semi-volatile organic compounds emitted from vegetation and are of interest for air quality considerations because of their suspected contribution to the formation of secondary aerosol. This article investigates the application of a capillary diffusion method for the generation of standard atmospheres of 16 SQT and four other related semi-volatile compounds. This instrument subsequently has been used in the testing of analytical materials, protocols and calibration of air sampling methods. SQT DB-1 retention indices, vapor pressures at 25 and 75 degrees C, and diffusion coefficients were determined. A quantitative, on-line GC method yielded improved results (median relative standard deviation of 5.0-6.1%) for the diffusion rate determination in comparison to a gravimetric approach (median relative standard deviation 18%). The GC method also allowed identifying errors in the gravimetric method stemming from residual solvent evaporation, impurities, and chemical analyte losses. Stainless steel, glass, nickel and PTFE tubing that were tested for transfer lines and a sampling loop had to be kept at temperatures in excess of approximately 110 degrees C in order to prevent significant analytical errors from the stickiness of SQT to these materials. In addition to SQT analysis, results from this research provide general guidelines for gas-phase analysis of related compounds in the C14-C16 volatility range.