The electronic Rothamsted Archive (e-RA), an online resource for data from the Rothamsted long-term experiments.

The electronic Rothamsted Archive, e-RA (www.era.rothamsted.ac.uk) provides a permanent managed database to both securely store and disseminate data from Rothamsted Research's long-term field experiments (since 1843) and meteorological stations (since 1853). Both historical and contemporary data are made available via this online database which provides the scientific community with access to a unique continuous record of agricultural experiments and weather measured since the mid-19th century. Qualitative information, such as treatment and management practices, plans and soil information, accompanies the data and are made available on the e-RA website. e-RA was released externally to the wider scientific community in 2013 and this paper describes its development, content, curation and the access process for data users. Case studies illustrate the diverse applications of the data, including its original intended purposes and recent unforeseen applications. Usage monitoring demonstrates the data are of increasing interest. Future developments, including adopting FAIR data principles, are proposed as the resource is increasingly recognised as a unique archive of data relevant to sustainable agriculture, agroecology and the environment.

Testing the distinctness of shoot ionomes of angiosperm families using the Rothamsted Park Grass Continuous Hay Experiment.

• The ionome is the elemental composition of a tissue or organism. Phylogenetic variation in the ionomes of plant shoots has been widely reported based on controlled experiments, vegetation surveys and literature meta-analyses. However, environmental effects on phylogenetic variation in shoot ionomes have not been quantified. This study tests the hypothesis that phylogenetic variation in shoot ionomes is robust to environmental perturbation and that plant families can be distinguished by their shoot ionomes. • Herbage was sampled from six subplots of the Rothamsted Park Grass Experiment. Subplots had received contrasting fertilizer treatments since 1856. Herbage was separated into its constituent species (n = 21) and concentrations of eleven mineral elements were determined in dried shoot material. • Shoot concentrations of calcium (Ca), zinc (Zn), manganese (Mn), magnesium (Mg) and sodium (Na) showed significant variation associated with plant species, and responded similarly to fertilizer treatments in diverse plant species. Species × treatment interactions were indicated for phosphorus (P), potassium (K), nickel (Ni), copper (Cu) and iron (Fe). Plant families could be distinguished by their shoot ionomes. The most informative elements for discriminant analysis were Ca > Mg > Ni > S > Na > Zn > K > Cu > Fe > Mn > P. • Whilst shoot ionomes were sensitive to fertilizer treatment, phylogenetic variation in a subset of the shoot ionome (Ca, Zn, Mn, Mg) was robust to this environmental perturbation.

Evidence of decreasing mineral density in wheat grain over the last 160 years.

Wheat is an important source of minerals such as iron, zinc, copper and magnesium in the UK diet. The dietary intake of these nutrients has fallen in recent years because of a combination of reduced energy requirements associated with sedentary lifestyles and changes in dietary patterns associated with lower micronutrient density in the diet. Recent publications using data from food composition tables indicate a downward trend in the mineral content of foods and it has been suggested that intensive farming practices may result in soil depletion of minerals. The aim of our study was to evaluate changes in the mineral concentration of wheat using a robust approach to establish whether trends are due to plant factors (e.g. cultivar, yield) or changes in soil nutrient concentration. The mineral concentration of archived wheat grain and soil samples from the Broadbalk Wheat Experiment (established in 1843 at Rothamsted, UK) was determined and trends over time examined in relation to cultivar, yield, and harvest index. The concentrations of zinc, iron, copper and magnesium remained stable between 1845 and the mid 1960s, but since then have decreased significantly, which coincided with the introduction of semi-dwarf, high-yielding cultivars. In comparison, the concentrations in soil have either increased or remained stable. Similarly decreasing trends were observed in different treatments receiving no fertilizers, inorganic fertilizers or organic manure. Multiple regression analysis showed that both increasing yield and harvest index were highly significant factors that explained the downward trend in grain mineral concentration.

Historical changes in the concentrations of selenium in soil and wheat grain from the Broadbalk experiment over the last 160 years.

Selenium (Se) intake has decreased substantially in the UK population since 1970s. To investigate whether Se concentration in wheat grain has changed as a result of yield improvement or environmental changes, we analyzed archived wheat grain from the Broadbalk Wheat Experiment at Rothamsted, England, which has been run continuously for over 160 years. Wheat grain and soil samples were selected from plots receiving different fertilizer or manure treatments. Grain Se concentration varied from 11 to 236 ng g(-1), with a mean and median of 44 and 32 ng g(-1), respectively. Grain samples from the unfertilized control plot had significantly higher concentrations of Se than those from fertilized or manured plots; the latter received various amounts of S and also had higher grain yield. No significant trends in grain Se concentrations were detected in the fertilized or manured plots, in spite of a dramatic increase in grain yield since the introduction of modern short-straw cultivars in the mid 1960s. In the control plot, grain samples had higher Se concentrations in the periods before 1920 or after 1970 than those during 1920-1970. This temporal pattern mirrored that of SO(2) emissions and atmospheric S deposition. Soil Se concentrations showed an increasing trend in all plots over 160 years. The results show that the Se concentration of wheat grain from the Broadbalk experiment was influenced by S inputs from fertilizers and atmospheric deposition, and that improving grain yield through plant breeding has not resulted in a significant decrease in grain Se concentration in the fertilized plots.

Markedly different gene expression in wheat grown with organic or inorganic fertilizer.

Nitrogen is the major determinant of crop yield and quality and the precise management of nitrogen fertilizer is an important issue for farmers and environmentalists. Despite this, little is known at the level of gene expression about the response of field crops to different amounts and forms of nitrogen fertilizer. Here we use expressed sequence tag (EST)-based wheat microarrays in combination with the oldest continuously running agricultural experiment in the world to show that gene expression is significantly influenced by the amount and form of nitrogenous fertilizer. In the Broadbalk winter wheat experiment at Rothamsted in the United Kingdom and at three other diverse test sites, we show that specific genes have surprisingly different expression levels in the grain endosperm when nitrogen is supplied either in an organic or an inorganic form. Many of the genes showing differential expression are known to participate in nitrogen metabolism and storage protein synthesis. However, others are of unknown function and therefore represent new leads for future investigation. Our observations show that specific gene expression is diagnostic for use of organic sources of nitrogen fertilizer and may therefore have useful applications in defining the differences between organically and conventionally grown wheat. [The sequences reported in this paper have been deposited in the GenBank database (accession nos. AL 208216-AL 831324).]