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1.
Dev Biol ; 508: 107-122, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38272285

ABSTRACT

Anatomical profiles of insects inform vector biology, comparative development and evolutionary studies with applications in forensics, agriculture and disease control. This study presents a comprehensive, high-resolution developmental profile of Anopheles stephensi, encompassing larval, pupal, and adult stages, obtained through microCT scanning. The results indicate in situ anatomical changes in most organ systems, including the central nervous system, eyes, musculature, alimentary canal, salivary glands, and ovaries, among other organ systems, except for the developing heart. We find significant differences in the mosquito gut, body-wall, and flight muscle development during metamorphosis from other dipterans like Drosophila. Specifically, indirect flight muscle specification and growth can be traced back at least to the 4th instar A. stephensi larvae, as opposed to post-puparial development in other Dipterans like Drosophila and Calliphora. Further, while Drosophila larval body-wall muscles and gut undergo histolysis, changes to these organs during mosquito metamorphosis are less pronounced. These observations, and raw data therein may serve as a reference for studies on the development and the genetics of mosquitoes. Overall, the detailed developmental profile of A. stephensi presented here illuminates the unique anatomy and developmental processes of Culicidae, with important implications for vector biology, disease control, and comparative evolutionary studies.


Subject(s)
Anopheles , Animals , Anopheles/genetics , Mosquito Vectors , Larva/physiology , Drosophila
2.
Heliyon ; 9(8): e18466, 2023 Aug.
Article in English | MEDLINE | ID: mdl-37554776

ABSTRACT

The human respiratory systems can be affected by several diseases and it is associated with distinctive sounds. For advanced biomedical signal processing, one of the most complex issues is automated respiratory sound classification. In this research, five Hybrid Interpretable Strategies with Ensemble Techniques (HISET) which are quite interesting and robust are proposed for the purpose of respiratory sounds classification. The first approach is termed as an Ensemble GSSR technique which utilizes L2 Granger Analysis and the proposed Supportive Ensemble Empirical Mode Decomposition (SEEMD) technique and then Support Vector Machine based Recursive Feature Elimination (SVM-RFE) is used for feature selection and followed by classification with Machine Learning (ML) classifiers. The second approach proposed is the implementation of a novel Realm Revamping Sparse Representation Classification (RR-SRC) technique and third approach proposed is a Distance Metric dependent Variational Mode Decomposition (DM-VMD) with Extreme Learning Machine (ELM) classification process. The fourth approach proposed is with the usage of Harris Hawks Optimization (HHO) with a Scaling Factor based Pliable Differential Evolution (SFPDE) algorithm termed as HHO-SFPDE and it is classified with ML classifiers. The fifth or the final approach proposed analyzes the application of dimensionality reduction techniques with the proposed Gray Wolf Optimization based Support Vector Classification (GWO-SVC) and another parallel approach utilizes a similar kind of analysis with the Grasshopper Optimization Algorithm (GOA) based Sparse Autoencoder. The results are examined for ICBHI dataset and the best results are shown for the 2-class classification when the analysis is carried out with Manhattan distance-based VMD-ELM reporting an accuracy of 95.39%, and for 3-class classification Euclidean distance-based VMD-ELM reported an accuracy of 90.61% and for 4-class classification, Manhattan distance-based VMD-ELM reported an accuracy of 89.27%.

3.
Front Neurosci ; 17: 1168112, 2023.
Article in English | MEDLINE | ID: mdl-37425001

ABSTRACT

One of the famous research areas in biomedical engineering and pattern recognition is finger movement classification. For hand and finger gesture recognition, the most widely used signals are the surface electromyogram (sEMG) signals. With the help of sEMG signals, four proposed techniques of finger movement classification are presented in this work. The first technique proposed is a dynamic graph construction and graph entropy-based classification of sEMG signals. The second technique proposed encompasses the ideas of dimensionality reduction utilizing local tangent space alignment (LTSA) and local linear co-ordination (LLC) with evolutionary algorithms (EA), Bayesian belief networks (BBN), extreme learning machines (ELM), and a hybrid model called EA-BBN-ELM was developed for the classification of sEMG signals. The third technique proposed utilizes the ideas of differential entropy (DE), higher-order fuzzy cognitive maps (HFCM), empirical wavelet transformation (EWT), and another hybrid model with DE-FCM-EWT and machine learning classifiers was developed for the classification of sEMG signals. The fourth technique proposed uses the ideas of local mean decomposition (LMD) and fuzzy C-means clustering along with a combined kernel least squares support vector machine (LS-SVM) classifier. The best classification accuracy results (of 98.5%) were obtained using the LMD-fuzzy C-means clustering technique classified with a combined kernel LS-SVM model. The second-best classification accuracy (of 98.21%) was obtained using the DE-FCM-EWT hybrid model with SVM classifier. The third best classification accuracy (of 97.57%) was obtained using the LTSA-based EA-BBN-ELM model.

4.
Front Artif Intell ; 6: 1156269, 2023.
Article in English | MEDLINE | ID: mdl-37415937

ABSTRACT

A comprehensive analysis of an automated system for epileptic seizure detection is explained in this work. When a seizure occurs, it is quite difficult to differentiate the non-stationary patterns from the discharges occurring in a rhythmic manner. The proposed approach deals with it efficiently by clustering it initially for the sake of feature extraction by using six different techniques categorized under two different methods, e.g., bio-inspired clustering and learning-based clustering. Learning-based clustering includes K-means clusters and Fuzzy C-means (FCM) clusters, while bio-inspired clusters include Cuckoo search clusters, Dragonfly clusters, Firefly clusters, and Modified Firefly clusters. Clustered values were then classified with 10 suitable classifiers, and after the performance comparison analysis of the EEG time series, the results proved that this methodology flow achieved a good performance index and a high classification accuracy. A comparatively higher classification accuracy of 99.48% was achieved when Cuckoo search clusters were utilized with linear support vector machines (SVM) for epilepsy detection. A high classification accuracy of 98.96% was obtained when K-means clusters were classified with a naive Bayesian classifier (NBC) and Linear SVM, and similar results were obtained when FCM clusters were classified with Decision Trees yielding the same values. The comparatively lowest classification accuracy, at 75.5%, was obtained when Dragonfly clusters were classified with the K-nearest neighbor (KNN) classifier, and the second lowest classification accuracy of 75.75% was obtained when Firefly clusters were classified with NBC.

5.
Front Comput Neurosci ; 16: 1016516, 2022.
Article in English | MEDLINE | ID: mdl-36465961

ABSTRACT

In comparison to other biomedical signals, electroencephalography (EEG) signals are quite complex in nature, so it requires a versatile model for feature extraction and classification. The structural information that prevails in the originally featured matrix is usually lost when dealing with standard feature extraction and conventional classification techniques. The main intention of this work is to propose a very novel and versatile approach for EEG signal modeling and classification. In this work, a sparse representation model along with the analysis of sparseness measures is done initially for the EEG signals and then a novel convergence of utilizing these sparse representation measures with Swarm Intelligence (SI) techniques based Hidden Markov Model (HMM) is utilized for the classification. The SI techniques utilized to compute the hidden states of the HMM are Particle Swarm Optimization (PSO), Differential Evolution (DE), Whale Optimization Algorithm (WOA), and Backtracking Search Algorithm (BSA), thereby making the HMM more pliable. Later, a deep learning methodology with the help of Convolutional Neural Network (CNN) was also developed with it and the results are compared to the standard pattern recognition classifiers. To validate the efficacy of the proposed methodology, a comprehensive experimental analysis is done over publicly available EEG datasets. The method is supported by strong statistical tests and theoretical analysis and results show that when sparse representation is implemented with deep learning, the highest classification accuracy of 98.94% is obtained and when sparse representation is implemented with SI-based HMM method, a high classification accuracy of 95.70% is obtained.

6.
Front Comput Neurosci ; 16: 900885, 2022.
Article in English | MEDLINE | ID: mdl-35847966

ABSTRACT

To classify the texts accurately, many machine learning techniques have been utilized in the field of Natural Language Processing (NLP). For many pattern classification applications, great success has been obtained when implemented with deep learning models rather than using ordinary machine learning techniques. Understanding the complex models and their respective relationships within the data determines the success of such deep learning techniques. But analyzing the suitable deep learning methods, techniques, and architectures for text classification is a huge challenge for researchers. In this work, a Contiguous Convolutional Neural Network (CCNN) based on Differential Evolution (DE) is initially proposed and named as Evolutionary Contiguous Convolutional Neural Network (ECCNN) where the data instances of the input point are considered along with the contiguous data points in the dataset so that a deeper understanding is provided for the classification of the respective input, thereby boosting the performance of the deep learning model. Secondly, a swarm-based Deep Neural Network (DNN) utilizing Particle Swarm Optimization (PSO) with DNN is proposed for the classification of text, and it is named Swarm DNN. This model is validated on two datasets and the best results are obtained when implemented with the Swarm DNN model as it produced a high classification accuracy of 97.32% when tested on the BBC newsgroup text dataset and 87.99% when tested on 20 newsgroup text datasets. Similarly, when implemented with the ECCNN model, it produced a high classification accuracy of 97.11% when tested on the BBC newsgroup text dataset and 88.76% when tested on 20 newsgroup text datasets.

7.
Biomed Res Int ; 2022: 2052061, 2022.
Article in English | MEDLINE | ID: mdl-35663047

ABSTRACT

One of the major reasons of mortality in human beings is cancer, and there is an absolute necessity for doctors to identify and treat a person suffering from it. Leukemia is a group of blood cancers that usually originates in the bone marrow and results in very high number of abnormal cells. For the diagnosis of cancer, microarray data serves as an important clinical application and serves as a great aid to the entire medical community. The dimensionality of the microarray data is too high, and so selection of suitable genes is quite an important step for the improvement of data classification. Therefore, for the prediction and diagnosis of cancer, there is an utmost necessity to select the most informative genes. In this work, Minimum Redundancy Maximum Relevance (MRMR), Signal to Noise Ratio (SNR), Multivariate Error Weight Uncorrelated Shrunken Centroid (EWUSC), and multivariate correlation-based feature selection (CFS) are chosen as initial feature selection techniques. Then, to select the most informative genes, five different kinds of evolutionary optimization techniques too are incorporated here such as African Buffalo Optimization (ABO), Artificial Bee Colony Optimization (ABCO), Cockroach Swarm Optimization (CSO), Imperialist Competitive Optimization (ICO), and Social Spider Optimization (SSO). Finally, the optimized values are fed through classification process and the best results are obtained when multivariate CFS with SSO is utilized and classified with Probabilistic Neural Network (PNN), and a high classification accuracy of 95.70% is obtained.


Subject(s)
Leukemia , Neoplasms , Algorithms , Humans , Leukemia/diagnosis , Leukemia/genetics , Microarray Analysis , Neoplasms/genetics
8.
Front Hum Neurosci ; 16: 895761, 2022.
Article in English | MEDLINE | ID: mdl-35721347

ABSTRACT

The vital data about the electrical activities of the brain are carried by the electroencephalography (EEG) signals. The recordings of the electrical activity of brain neurons in a rhythmic and spontaneous manner from the scalp surface are measured by EEG. One of the most important aspects in the field of neuroscience and neural engineering is EEG signal analysis, as it aids significantly in dealing with the commercial applications as well. To uncover the highly useful information for neural classification activities, EEG studies incorporated with machine learning provide good results. In this study, a Fusion Hybrid Model (FHM) with Singular Value Decomposition (SVD) Based Estimation of Robust Parameters is proposed for efficient feature extraction of the biosignals and to understand the essential information it has for analyzing the brain functionality. The essential features in terms of parameter components are extracted using the developed hybrid model, and a specialized hybrid swarm technique called Hybrid Differential Particle Artificial Bee (HDPAB) algorithm is proposed for feature selection. To make the EEG more practical and to be used in a plethora of applications, the robust classification of these signals is necessary thereby relying less on the trained professionals. Therefore, the classification is done initially using the proposed Zero Inflated Poisson Mixture Regression Model (ZIPMRM) and then it is also classified with a deep learning methodology, and the results are compared with other standard machine learning techniques. This proposed flow of methodology is validated on a few standard Biosignal datasets, and finally, a good classification accuracy of 98.79% is obtained for epileptic dataset and 98.35% is obtained for schizophrenia dataset.

9.
IEEE Open J Eng Med Biol ; 3: 58-68, 2022.
Article in English | MEDLINE | ID: mdl-35770240

ABSTRACT

The most vital information about the electrical activities of the brain can be obtained with the help of Electroencephalography (EEG) signals. It is quite a powerful tool to analyze the neural activities of the brain and various neurological disorders like epilepsy, schizophrenia, sleep related disorders, parkinson disease etc. can be investigated well with the help of EEG signals. Goal: In this paper, two versatile deep learning methods are proposed for the efficient classification of epilepsy and schizophrenia from EEG datasets. Methods: The main advantage of using deep learning when compared to other machine learning algorithms is that it has the capability to accomplish feature engineering on its own. Swarm intelligence is also a highly useful technique to solve a wide range of real-world, complex, and non-linear problems. Therefore, taking advantage of these factors, the first method proposed is a Sparse Autoencoder (SAE) with swarm based deep learning method and it is named as (SASDL) using Particle Swarm Optimization (PSO) technique, Cuckoo Search Optimization (CSO) technique and Bat Algorithm (BA) technique; and the second technique proposed is the Reinforcement Learning based on Bidirectional Long-Short Term Memory (BiLSTM), Attention Mechanism, Tree LSTM and Q learning, and it is named as (RBATQ) technique. Results and Conclusions: Both these two novel deep learning techniques are tested on epilepsy and schizophrenia EEG datasets and the results are analyzed comprehensively, and a good classification accuracy of more than 93% is obtained for all the datasets.

10.
Sensors (Basel) ; 22(9)2022 May 07.
Article in English | MEDLINE | ID: mdl-35591246

ABSTRACT

Manual sleep stage scoring is usually implemented with the help of sleep specialists by means of visual inspection of the neurophysiological signals of the patient. As it is a very hectic task to perform, automated sleep stage classification systems were developed in the past, and advancements are being made consistently by researchers. The various stages of sleep are identified by these automated sleep stage classification systems, and it is quite an important step to assist doctors for the diagnosis of sleep-related disorders. In this work, a holistic strategy named as clustering and dimensionality reduction with feature extraction cum selection for classification along with deep learning (CDFCD) is proposed for the classification of sleep stages with EEG signals. Though the methodology follows a similar structural flow as proposed in the past works, many advanced and novel techniques are proposed under each category in this work flow. Initially, clustering is applied with the help of hierarchical clustering, spectral clustering, and the proposed principal component analysis (PCA)-based subspace clustering. Then the dimensionality of it is reduced with the help of the proposed singular value decomposition (SVD)-based spectral algorithm and the standard variational Bayesian matrix factorization (VBMF) technique. Then the features are extracted and selected with the two novel proposed techniques, such as the sparse group lasso technique with dual-level implementation (SGL-DLI) and the ridge regression technique with limiting weight scheme (RR-LWS). Finally, the classification happens with the less explored multiclass Gaussian process classification (MGC), the proposed random arbitrary collective classification (RACC), and the deep learning technique using long short-term memory (LSTM) along with other conventional machine learning techniques. This methodology is validated on the sleep EDF database, and the results obtained with this methodology have surpassed the results of the previous studies in terms of the obtained classification accuracy reporting a high accuracy of 93.51% even for the six-classes classification problem.


Subject(s)
Electroencephalography , Sleep Stages , Sleep Wake Disorders , Automation , Bayes Theorem , Deep Learning , Electroencephalography/methods , Holistic Health , Humans , Machine Learning , Principal Component Analysis , Sleep/physiology , Sleep Stages/physiology , Sleep Wake Disorders/classification , Sleep Wake Disorders/diagnosis , Sleep Wake Disorders/physiopathology
11.
IEEE J Biomed Health Inform ; 26(1): 264-275, 2022 01.
Article in English | MEDLINE | ID: mdl-34156955

ABSTRACT

With the development of sensing technologies and machine learning, techniques that can identify emotions and inner states of a human through physiological signals, known as electroencephalography (EEG), have been actively developed and applied to various domains, such as automobiles, robotics, healthcare, and customer-support services. Thus, the demand for acquiring and analyzing EEG signals in real-time is increasing. In this paper, we aimed to acquire a new EEG dataset based on the discrete emotion theory, termed as WeDea (Wireless-based eeg Data for emotion analysis), and propose a new combination for WeDea analysis. For the collected WeDea dataset, we used video clips as emotional stimulants that were selected by 15 volunteers. Consequently, WeDea is a multi-way dataset measured while 30 subjects are watching the selected 79 video clips under five different emotional states using a convenient portable headset device. Furthermore, we designed a framework for recognizing human emotional state using this new database. The practical results for different types of emotions have proven that WeDea is a promising resource for emotion analysis and can be applied to the field of neuroscience.


Subject(s)
Electroencephalography , Machine Learning , Databases, Factual , Electroencephalography/methods , Emotions/physiology , Humans
12.
Comput Intell Neurosci ; 2021: 9425655, 2021.
Article in English | MEDLINE | ID: mdl-34603437

ABSTRACT

To unlock information present in clinical description, automatic medical text classification is highly useful in the arena of natural language processing (NLP). For medical text classification tasks, machine learning techniques seem to be quite effective; however, it requires extensive effort from human side, so that the labeled training data can be created. For clinical and translational research, a huge quantity of detailed patient information, such as disease status, lab tests, medication history, side effects, and treatment outcomes, has been collected in an electronic format, and it serves as a valuable data source for further analysis. Therefore, a huge quantity of detailed patient information is present in the medical text, and it is quite a huge challenge to process it efficiently. In this work, a medical text classification paradigm, using two novel deep learning architectures, is proposed to mitigate the human efforts. The first approach is that a quad channel hybrid long short-term memory (QC-LSTM) deep learning model is implemented utilizing four channels, and the second approach is that a hybrid bidirectional gated recurrent unit (BiGRU) deep learning model with multihead attention is developed and implemented successfully. The proposed methodology is validated on two medical text datasets, and a comprehensive analysis is conducted. The best results in terms of classification accuracy of 96.72% is obtained with the proposed QC-LSTM deep learning model, and a classification accuracy of 95.76% is obtained with the proposed hybrid BiGRU deep learning model.


Subject(s)
Deep Learning , Attention , Humans , Machine Learning , Natural Language Processing , Neural Networks, Computer
13.
J Healthc Eng ; 2021: 6680424, 2021.
Article in English | MEDLINE | ID: mdl-34373776

ABSTRACT

In the field of bioinformatics, feature selection in classification of cancer is a primary area of research and utilized to select the most informative genes from thousands of genes in the microarray. Microarray data is generally noisy, is highly redundant, and has an extremely asymmetric dimensionality, as the majority of the genes present here are believed to be uninformative. The paper adopts a methodology of classification of high dimensional lung cancer microarray data utilizing feature selection and optimization techniques. The methodology is divided into two stages; firstly, the ranking of each gene is done based on the standard gene selection techniques like Information Gain, Relief-F test, Chi-square statistic, and T-statistic test. As a result, the gathering of top scored genes is assimilated, and a new feature subset is obtained. In the second stage, the new feature subset is further optimized by using swarm intelligence techniques like Grasshopper Optimization (GO), Moth Flame Optimization (MFO), Bacterial Foraging Optimization (BFO), Krill Herd Optimization (KHO), and Artificial Fish Swarm Optimization (AFSO), and finally, an optimized subset is utilized. The selected genes are used for classification, and the classifiers used here are Naïve Bayesian Classifier (NBC), Decision Trees (DT), Support Vector Machines (SVM), and K-Nearest Neighbour (KNN). The best results are shown when Relief-F test is computed with AFSO and classified with Decision Trees classifier for hundred genes, and the highest classification accuracy of 99.10% is obtained.


Subject(s)
Algorithms , Lung Neoplasms , Animals , Bayes Theorem , Intelligence , Lung Neoplasms/genetics , Support Vector Machine
14.
Comput Intell Neurosci ; 2020: 8853835, 2020.
Article in English | MEDLINE | ID: mdl-33335544

ABSTRACT

One of the serious mental disorders where people interpret reality in an abnormal state is schizophrenia. A combination of extremely disordered thinking, delusion, and hallucination is caused due to schizophrenia, and the daily functions of a person are severely disturbed because of this disorder. A wide range of problems are caused due to schizophrenia such as disturbed thinking and behaviour. In the field of human neuroscience, the analysis of brain activity is quite an important research area. For general cognitive activity analysis, electroencephalography (EEG) signals are widely used as a low-resolution diagnosis tool. The EEG signals are a great boon to understand the abnormality of the brain disorders, especially schizophrenia. In this work, schizophrenia EEG signal classification is performed wherein, initially, features such as Detrend Fluctuation Analysis (DFA), Hurst Exponent, Recurrence Quantification Analysis (RQA), Sample Entropy, Fractal Dimension (FD), Kolmogorov Complexity, Hjorth exponent, Lempel Ziv Complexity (LZC), and Largest Lyapunov Exponent (LLE) are extracted initially. The extracted features are, then, optimized for selecting the best features through four types of optimization algorithms here such as Artificial Flora (AF) optimization, Glowworm Search (GS) optimization, Black Hole (BH) optimization, and Monkey Search (MS) optimization, and finally, it is classified through certain classifiers. The best results show that, for normal cases, a classification accuracy of 87.54% is obtained when BH optimization is utilized with Support Vector Machine-Radial Basis Function (SVM-RBF) kernel, and for schizophrenia cases, a classification accuracy of 92.17% is obtained when BH optimization is utilized with SVM-RBF kernel.


Subject(s)
Schizophrenia , Signal Processing, Computer-Assisted , Algorithms , Electroencephalography , Humans , Intelligence , Nonlinear Dynamics , Schizophrenia/diagnosis , Support Vector Machine
15.
Heliyon ; 6(12): e05689, 2020 Dec.
Article in English | MEDLINE | ID: mdl-33364482

ABSTRACT

The basic function of the brain is severely affected by alcoholism. For the easy depiction and assessment of the mental condition of a human brain, Electroencephalography (EEG) signals are highly useful as it can record and measure the electrical activities of the brain much to the satisfaction of doctors and researchers. Utilizing the standard conventional techniques is quite hectic to derive the useful information as these signals are highly non-linear and non-stationary in nature. While recording the EEG signals, the activities of the neurons are recorded from various scalp regions which has varied characteristics and has a very low magnitude. Therefore, human interpretation of such signals is very difficult and consumes a lot of time. Hence, with the advent of Computer Aided Diagnosis (CAD) Techniques, identifying the normal versus alcoholic EEG signals has been of great utility in the medical field. In this work, we perform the initial clustering of the alcoholic EEG signals by means of using Correlation Dimension (CD) for easy feature extraction and then the suitable features are selected in it by means of employing various distance metrics like correlation distance, city block distance, cosine distance and chebyshev distance. Proceeding in such a methodology aids and assures that a good discrimination could be achieved between normal and alcoholic EEG signals using non-linear features. Finally, classification is then carried out with the suitable classifiers chosen such as Adaboost.RT classifier, the proposed Modified Adaboost.RT classifier by means of introducing Ridge and Lasso based soft thresholding technique, Random Forest with bootstrap resampling technique, Artificial Neural Networks (ANN) such as Radial Basis Functions (RBF) and Multi-Layer Perceptron (MLP), Support Vector Machine (SVM) with Linear, Polynomial and RBF Kernel, Naïve Bayesian Classifier (NBC), K-means classifier, and K Nearest Neighbor (KNN) Classifier and the results are analyzed. Results report a comparatively high classification accuracy of about 98.99% when correlation distance metrics are utilized with CD and the proposed Modified Adaboost.RT classifier using Ridge based soft thresholding technique.

16.
Diagnostics (Basel) ; 10(10)2020 Sep 28.
Article in English | MEDLINE | ID: mdl-32998452

ABSTRACT

The main aim of this paper is to optimize the output of diagnosis of Cardiovascular Disorders (CVD) in Photoplethysmography (PPG) signals by utilizing a fuzzy-based approach with classification. The extracted parameters such as Energy, Variance, Approximate Entropy (ApEn), Mean, Standard Deviation (STD), Skewness, Kurtosis, and Peak Maximum are obtained initially from the PPG signals, and based on these extracted parameters, the fuzzy techniques are incorporated to model the Cardiovascular Disorder(CVD) risk levels from PPG signals. Optimization algorithms such as Differential Search (DS), Shuffled Frog Leaping Algorithm (SFLA), Wolf Search (WS), and Animal Migration Optimization (AMO) are implemented to the fuzzy modeled levels to optimize them further so that the PPG cardiovascular classification can be characterized well. This kind of approach is totally new in PPG signal classification, and the results show that when fuzzy-inspired modeling is implemented with WS optimization and classified with the Radial Basis Function (RBF) classifier, a classification accuracy of 94.79% is obtained for normal cases. When fuzzy-inspired modeling is implemented with AMO and classified with the Support Vector Machine-Radial Basis Function (SVM-RBF) classifier, a classification accuracy of 95.05% is obtained for CVD cases.

17.
Biomed Res Int ; 2020: 8427574, 2020.
Article in English | MEDLINE | ID: mdl-33102596

ABSTRACT

One of the deadliest diseases which affects the large intestine is colon cancer. Older adults are typically affected by colon cancer though it can happen at any age. It generally starts as small benign growth of cells that forms on the inside of the colon, and later, it develops into cancer. Due to the propagation of somatic alterations that affects the gene expression, colon cancer is caused. A standardized format for assessing the expression levels of thousands of genes is provided by the DNA microarray technology. The tumors of various anatomical regions can be distinguished by the patterns of gene expression in microarray technology. As the microarray data is too huge to process due to the curse of dimensionality problem, an amalgamated approach of utilizing bilevel feature selection techniques is proposed in this paper. In the first level, the genes or the features are dimensionally reduced with the help of Multivariate Minimum Redundancy-Maximum Relevance (MRMR) technique. Then, in the second level, six optimization techniques are utilized in this work for selecting the best genes or features before proceeding to classification process. The optimization techniques considered in this work are Invasive Weed Optimization (IWO), Teaching Learning-Based Optimization (TLBO), League Championship Optimization (LCO), Beetle Antennae Search Optimization (BASO), Crow Search Optimization (CSO), and Fruit Fly Optimization (FFO). Finally, it is classified with five suitable classifiers, and the best results show when IWO is utilized with MRMR, and then classified with Quadratic Discriminant Analysis (QDA), a classification accuracy of 99.16% is obtained.


Subject(s)
Colonic Neoplasms/genetics , Colonic Neoplasms/pathology , Algorithms , Discriminant Analysis , Gene Expression/genetics , Gene Expression Profiling/methods , Humans , Oligonucleotide Array Sequence Analysis/methods
18.
Open Biol ; 9(6): 190087, 2019 06 28.
Article in English | MEDLINE | ID: mdl-31238820

ABSTRACT

Indirect flight muscles (IFMs) in adult Drosophila provide the key power stroke for wing beating. They also serve as a valuable model for studying muscle development. An age-dependent decline in Drosophila free flight has been documented, but its relation to gross muscle structure has not yet been explored satisfactorily. Such analyses are impeded by conventional histological preparations and imaging techniques that limit exact morphometry of flight muscles. In this study, we employ microCT scanning on a tissue preparation that retains muscle morphology under homeostatic conditions. Focusing on a subset of IFMs called the dorsal longitudinal muscles (DLMs), we find that DLM volumes increase with age, partially due to the increased separation between myofibrillar fascicles, in a sex-dependent manner. We have uncovered and quantified asymmetry in the size of these muscles on either side of the longitudinal midline. Measurements of this resolution and scale make substantive studies that test the connection between form and function possible. We also demonstrate the application of this method to other insect species making it a valuable tool for histological analysis of insect biodiversity.


Subject(s)
Drosophila/physiology , Muscle, Skeletal/anatomy & histology , Aging/physiology , Animals , Drosophila/anatomy & histology , Female , Male , Muscle, Skeletal/diagnostic imaging , Muscle, Skeletal/physiology , Wings, Animal/anatomy & histology , Wings, Animal/diagnostic imaging , Wings, Animal/physiology , X-Ray Microtomography
19.
PLoS One ; 7(11): e49848, 2012.
Article in English | MEDLINE | ID: mdl-23185459

ABSTRACT

BACKGROUND: Members of the canonical Transient Receptor Potential (TRPC) class of cationic channels function downstream of Gαq and PLCß in Drosophila photoreceptors for transducing visual stimuli. Gαq has recently been implicated in olfactory sensing of carbon dioxide (CO(2)) and other odorants. Here we investigated the role of PLCß and TRPC channels for sensing CO(2) in Drosophila. METHODOLOGY/PRINCIPAL FINDINGS: Through behavioral assays it was demonstrated that Drosophila mutants for plc21c, trp and trpl have a reduced sensitivity for CO(2). Immuno-histochemical staining for TRP, TRPL and TRPγ indicates that all three channels are expressed in Drosophila antennae including the sensory neurons that express CO(2) receptors. Electrophysiological recordings obtained from the antennae of protein null alleles of TRP (trp(343)) and TRPL (trpl(302)), showed that the sensory response to multiple concentrations of CO(2) was reduced. However, trpl(302); trp(343) double mutants still have a residual response to CO(2). Down-regulation of TRPC channels specifically in CO(2) sensing olfactory neurons reduced the response to CO(2) and this reduction was obtained even upon down-regulation of the TRPCs in adult olfactory sensory neurons. Thus the reduced response to CO(2) obtained from the antennae of TRPC RNAi strains is not due to a developmental defect. CONCLUSION: These observations show that reduction in TRPC channel function significantly reduces the sensitivity of the olfactory response to CO(2) concentrations of 5% or less in adult Drosophila. It is possible that the CO(2) receptors Gr63a and Gr21a activate the TRPC channels through Gαq and PLC21C.


Subject(s)
Carbon Dioxide/metabolism , Drosophila , Olfactory Pathways/physiology , Receptors, Cell Surface , TRPC Cation Channels , Animals , Carbon Dioxide/pharmacology , Drosophila/genetics , Drosophila/physiology , Drosophila Proteins/metabolism , Drosophila Proteins/physiology , Gene Expression Regulation , Mutation , Olfactory Pathways/metabolism , Phospholipase C beta/genetics , Phospholipase C beta/metabolism , Photoreceptor Cells, Invertebrate/metabolism , Receptors, Cell Surface/genetics , Receptors, Cell Surface/metabolism , Sensory Receptor Cells/metabolism , TRPC Cation Channels/chemistry , TRPC Cation Channels/genetics , TRPC Cation Channels/physiology , Vision, Ocular
20.
J Exp Biol ; 215(Pt 17): 3096-105, 2012 Sep 01.
Article in English | MEDLINE | ID: mdl-22660776

ABSTRACT

In diverse insects, the forward positioning of the antenna is often among the first behavioral indicators of the onset of flight. This behavior may be important for the proper acquisition of the mechanosensory and olfactory inputs by the antennae during flight. Here, we describe the neural mechanisms of antennal positioning in hawk moths from behavioral, neuroanatomical and neurophysiological perspectives. The behavioral experiments indicated that a set of sensory bristles called Böhm's bristles (or hair plates) mediate antennal positioning during flight. When these sensory structures were ablated from the basal segments of their antennae, moths were unable to bring their antennae into flight position, causing frequent collisions with the flapping wing. Fluorescent dye-fills of the underlying sensory and motor neurons revealed that the axonal arbors of the mechanosensory bristle neurons spatially overlapped with the dendritic arbors of the antennal motor neurons. Moreover, the latency between the activation of antennal muscles following stimulation of sensory bristles was also very short (<10 ms), indicating that the sensorimotor connections may be direct. Together, these data show that Böhm's bristles control antennal positioning in moths via a reflex mechanism. Because the sensory structures and motor organization are conserved across most Neoptera, the mechanisms underlying antennal positioning, as described here, are likely to be conserved in these diverse insects.


Subject(s)
Arthropod Antennae/anatomy & histology , Arthropod Antennae/physiology , Flight, Animal/physiology , Moths/anatomy & histology , Moths/physiology , Nervous System Physiological Phenomena , Animals , Arthropod Antennae/ultrastructure , Axons/physiology , Behavior, Animal/physiology , Dendrites/physiology , Electromyography , Female , Male , Models, Biological , Motor Neurons/physiology , Muscles/physiology , Physical Stimulation
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