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1.
Indian J Ophthalmol ; 68(12): 3050-3053, 2020 Dec.
Article in English | MEDLINE | ID: mdl-33229703

ABSTRACT

A 23-year-old male presented to us wanting spectacle removal for cosmetic purposes. He underwent bilateral wavefront optimized (WFO) laser-assisted in situ keratomileusis (LASIK) on the Alcon Wavelight ® EX-500 excimer laser with an incorrectly treated astigmatism axis for left eye due to a manual data entry error in the laser. WFO LASIK treats the sphere and cylinder only. LASIK enhancement with topographic-guided ablation resulted in the elimination of all refractive errors and gave excellent results. Wavelight ® topographic-guided treatment can perform two separate layers of correction in the same ablation: The first is to treat the corneal irregularities for the higher order aberration (HOA) removal, the second one meant to treat the sphere and cylinder if indicated.


Subject(s)
Astigmatism , Keratomileusis, Laser In Situ , Myopia , Adult , Astigmatism/diagnosis , Astigmatism/surgery , Corneal Topography , Humans , Lasers, Excimer/therapeutic use , Male , Myopia/diagnosis , Myopia/surgery , Prospective Studies , Refraction, Ocular , Treatment Outcome , Visual Acuity , Young Adult
2.
Future Microbiol ; 9(6): 791-805, 2014.
Article in English | MEDLINE | ID: mdl-25046525

ABSTRACT

New data suggest that the global incidence of several types of fungal diseases have traditionally been under-documented. Of these, mortality caused by invasive fungal infections remains disturbingly high, equal to or exceeding deaths caused by drug-resistant tuberculosis and malaria. It is clear that basic research on new antifungal drugs, vaccines and diagnostic tools is needed. In this review, we focus upon antifungal drug discovery including in vitro assays, compound libraries and approaches to target identification. Genome mining has made it possible to identify fungal-specific targets; however, new compounds to these targets are apparently not in the antimicrobial pipeline. We suggest that 'repurposing' compounds (off patent) might be a more immediate starting point. Furthermore, we examine the dogma on antifungal discovery and suggest that a major thrust in technologies such as structural biology, homology modeling and virtual imaging is needed to drive discovery.


Subject(s)
Antifungal Agents/therapeutic use , Drug Discovery/methods , Mycoses/drug therapy , Humans
3.
Bioorg Med Chem Lett ; 19(17): 5119-23, 2009 Sep 01.
Article in English | MEDLINE | ID: mdl-19631528

ABSTRACT

Non-nucleoside reverse transcriptase inhibitors (NNRTIs) are key elements of multidrug regimens, called HAART (Highly Active Antiretroviral Therapy), that are used to treat HIV-1 infections. Elucidation of the structure-activity relationships of the thiocarbamate moiety of the previous published lead compound 2 provided a series of novel tetrahydroquinoline derivatives as potent inhibitors of HIV-1 RT with nanomolar intrinsic activity on the WT and key mutant enzymes and potent antiviral activity in infected cells. The SAR optimization, mutation profiles, preparation of compounds, and pharmacokinetic profile of compounds are described.


Subject(s)
Anti-HIV Agents/chemistry , HIV Reverse Transcriptase/antagonists & inhibitors , Quinolines/chemistry , Reverse Transcriptase Inhibitors/chemistry , Allosteric Site , Anti-HIV Agents/chemical synthesis , Anti-HIV Agents/pharmacology , Binding Sites , Crystallography, X-Ray , HIV Reverse Transcriptase/metabolism , Molecular Conformation , Mutant Proteins/antagonists & inhibitors , Mutant Proteins/metabolism , Quinolines/chemical synthesis , Quinolines/pharmacology , Reverse Transcriptase Inhibitors/chemical synthesis , Reverse Transcriptase Inhibitors/pharmacology , Structure-Activity Relationship , Thiocarbamates/chemistry , Thiocarbamates/pharmacology
4.
J Med Chem ; 51(20): 6503-11, 2008 Oct 23.
Article in English | MEDLINE | ID: mdl-18826204

ABSTRACT

Non-nucleoside reverse transcriptase inhibitors (NNRTIs) have been shown to be a key component of highly active antiretroviral therapy (HAART). The use of NNRTIs has become part of standard combination antiviral therapies producing clinical outcomes with efficacy comparable to other antiviral regimens. There is, however, a critical issue with the emergence of clinical resistance, and a need has arisen for novel NNRTIs with a broad spectrum of activity against key HIV-1 RT mutations. Using a combination of traditional medicinal chemistry/SAR analyses, crystallography, and molecular modeling, we have designed and synthesized a series of novel, highly potent NNRTIs that possess broad spectrum antiviral activity and good pharmacokinetic profiles. Further refinement of key compounds in this series to optimize physical properties and pharmacokinetics has resulted in the identification of 8e (MK-4965), which has high levels of potency against wild-type and key mutant viruses, excellent oral bioavailability and overall pharmacokinetics, and a clean ancillary profile.


Subject(s)
HIV Reverse Transcriptase/antagonists & inhibitors , HIV-1/drug effects , HIV-1/enzymology , Pyrazoles/chemical synthesis , Pyrazoles/pharmacology , Pyridines/chemical synthesis , Pyridines/pharmacology , Reverse Transcriptase Inhibitors/chemical synthesis , Reverse Transcriptase Inhibitors/pharmacology , Administration, Oral , Animals , Bromine Compounds/chemical synthesis , Bromine Compounds/chemistry , Crystallography, X-Ray , Drug Evaluation, Preclinical , HIV Reverse Transcriptase/chemistry , HIV Reverse Transcriptase/genetics , HIV Reverse Transcriptase/metabolism , HIV-1/genetics , Models, Molecular , Molecular Structure , Mutation/genetics , Nucleosides/chemistry , Nucleosides/pharmacology , Pyrazoles/chemistry , Pyridines/chemistry , Rats , Rats, Sprague-Dawley , Reverse Transcriptase Inhibitors/chemistry , Structure-Activity Relationship
6.
J Biol Chem ; 279(17): 17996-8007, 2004 Apr 23.
Article in English | MEDLINE | ID: mdl-14754895

ABSTRACT

The angiotensin-converting enzyme (ACE)-related carboxypeptidase, ACE2, is a type I integral membrane protein of 805 amino acids that contains one HEXXH + E zinc-binding consensus sequence. ACE2 has been implicated in the regulation of heart function and also as a functional receptor for the coronavirus that causes the severe acute respiratory syndrome (SARS). To gain further insights into this enzyme, the first crystal structures of the native and inhibitor-bound forms of the ACE2 extracellular domains were solved to 2.2- and 3.0-A resolution, respectively. Comparison of these structures revealed a large inhibitor-dependent hinge-bending movement of one catalytic subdomain relative to the other ( approximately 16 degrees ) that brings important residues into position for catalysis. The potent inhibitor MLN-4760 ((S,S)-2-[1-carboxy-2-[3-(3,5-dichlorobenzyl)-3H-imidazol4-yl]-ethylamino]-4-methylpentanoic acid) makes key binding interactions within the active site and offers insights regarding the action of residues involved in catalysis and substrate specificity. A few active site residue substitutions in ACE2 relative to ACE appear to eliminate the S(2)' substrate-binding subsite and account for the observed reactivity change from the peptidyl dipeptidase activity of ACE to the carboxypeptidase activity of ACE2.


Subject(s)
Carboxypeptidases/chemistry , Amino Acid Sequence , Amino Acids/chemistry , Angiotensin-Converting Enzyme 2 , Binding Sites , Catalysis , Crystallography, X-Ray , Enzyme Inhibitors/pharmacology , Humans , Imidazoles/pharmacology , Leucine/analogs & derivatives , Leucine/pharmacology , Models, Chemical , Models, Molecular , Molecular Sequence Data , Peptidyl-Dipeptidase A , Protein Binding , Protein Conformation , Protein Structure, Tertiary , Receptors, Coronavirus , Receptors, Virus/chemistry , Sequence Homology, Amino Acid , Substrate Specificity , Zinc/chemistry
7.
Protein Sci ; 13(1): 145-54, 2004 Jan.
Article in English | MEDLINE | ID: mdl-14691230

ABSTRACT

The type II transmembrane serine protease dipeptidyl peptidase IV (DPPIV), also known as CD26 or adenosine deaminase binding protein, is a major regulator of various physiological processes, including immune, inflammatory, nervous, and endocrine functions. It has been generally accepted that glycosylation of DPPIV and of other transmembrane dipeptidyl peptidases is a prerequisite for enzyme activity and correct protein folding. Crystallographic studies on DPPIV reveal clear N-linked glycosylation of nine Asn residues in DPPIV. However, the importance of each glycosylation site on physiologically relevant reactions such as dipeptide cleavage, dimer formation, and adenosine deaminase (ADA) binding remains obscure. Individual Asn-->Ala point mutants were introduced at the nine glycosylation sites in the extracellular domain of DPPIV (residues 39-766). Crystallographic and biochemical data demonstrate that N-linked glycosylation of DPPIV does not contribute significantly to its peptidase activity. The kinetic parameters of dipeptidyl peptidase cleavage of wild-type DPPIV and the N-glycosylation site mutants were determined by using Ala-Pro-AFC and Gly-Pro-pNA as substrates and varied by <50%. DPPIV is active as a homodimer. Size-exclusion chromatographic analysis showed that the glycosylation site mutants do not affect dimerization. ADA binds to the highly glycosylated beta-propeller domain of DPPIV, but the impact of glycosylation on binding had not previously been determined. Our studies indicate that glycosylation of DPPIV is not required for ADA binding. Taken together, these data indicate that in contrast to the generally accepted view, glycosylation of DPPIV is not a prerequisite for catalysis, dimerization, or ADA binding.


Subject(s)
Adenosine Deaminase/metabolism , Dipeptidyl Peptidase 4/metabolism , Alanine/metabolism , Amino Acid Sequence , Amino Acid Substitution , Binding Sites , Catalysis , Chromatography, Gel , Crystallography, X-Ray , Dimerization , Dipeptidyl Peptidase 4/chemistry , Dipeptidyl Peptidase 4/genetics , Dipeptidyl Peptidase 4/isolation & purification , Disulfides , Glycosylation , Humans , Kinetics , Models, Molecular , Molecular Sequence Data , Point Mutation , Protein Folding , Protein Structure, Tertiary , Protein Transport , Sequence Homology, Amino Acid , Substrate Specificity
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