DNA Release from Fe3+ -Cross-Linked Alginate Films Triggered by Logically Processed Biomolecular Signals: Integration of Biomolecular Computing and Actuation.

Signal-controlled release of DNA from Fe3+ -cross-linked alginate hydrogel electrochemically deposited on an electrode surface was studied. The multiple input signals were logically processed with the help of the enzyme-biocatalyzed reactions. Boolean logic gates, OR, AND, INH, were realized with the biocatalytic reactions performed by the enzymes entrapped in the alginate film. Hydrogen peroxide produced by the enzymatic reactions resulted in the degradation of the alginate hydrogel and DNA release. The alginate degradation was facilitated by the formation of free radicals in the Fenton-type reaction catalyzed by iron cations cross-linking the alginate hydrogel. The studied approach is versatile and can be adapted to various chemical signals processed by various enzymes with differently implemented Boolean logic. This work illustrates a novel concept of functional integration of biomolecular computing and actuation.

Multianalyte digital enzyme biosensors with built-in Boolean logic.

Novel biosensors based on the biocomputing concept digitally process multiple biochemical signals through Boolean logic networks of coupled biomolecular reactions and produce output in the form of a YES/NO response. Compared to traditional single-analyte sensing devices, biocomputing approach enables a high-fidelity multianalyte biosensing, particularly beneficial for biomedical applications.

Responsive interface switchable by logically processed physiological signals: toward "smart" actuators for signal amplification and drug delivery.

Biomarkers characteristic of liver injury, alanine transaminase and lactate dehydrogenase, were processed by an enzyme-based system functioning as a logic AND gate. The NAD+ output signal produced by the system upon its activation in the presence of both biomarkers was then biocatalytically converted to a decrease in pH. The acidic pH value biocatalytically produced by the system as a response to the biomarkers triggered the restructuring of a polymer-modified electrode interface. This allowed a soluble redox species to approach the electrode surface, thus switching the electrochemical reaction ON. The redox transformations activated by the biochemical signals resulted in an amplification of signals. This system represents the first example of an integrated sensing-actuating chemical device with the implemented AND Boolean logic for processing natural biomarkers at their physiologically relevant concentrations.

Switchable electrode controlled by enzyme logic network system: approaching physiologically regulated bioelectronics.

The logic network composed of three enzymes (alcohol dehydrogenase, glucose dehydrogenase, and glucose oxidase) operating in concert as four concatenated logic gates (AND/OR), was designed to process four different chemical input signals (NADH, acetaldehyde, glucose, and oxygen). The cascade of biochemical reactions culminated in pH changes controlled by the pattern of the applied biochemical input signals. The "successful" set of inputs produced gluconic acid as the final product and yielded an acidic medium, lowering the pH of a solution from its initial value of pH 6-7 to the final value of ca. 4. The whole set of the input signal combinations included 16 variants resulting in different output signals. Those that corresponded to the logic output 1, according to the Boolean logic encoded in the logic circuitry, resulted in the acidic medium. The pH changes produced in situ were coupled with a pH-sensitive polymer-brush-functionalized electrode, resulting in the interface switching from the OFF state, when the electrochemical reactions are inhibited, to the ON state, when the interface is electrochemically active. Soluble [Fe(CN)(6)](3-/4-) was used as an external redox probe to analyze the state of the interface and to follow the changes produced in situ by the enzyme logic network, depending on the pattern of the applied biochemical signals. The chemical signals processed by the enzyme logic system and transduced by the sensing interface were read out by electrochemical means (cyclic voltammetry and Faradaic impedance spectroscopy). This readout step features a "sigmoid" processing of the signals that provides "filtering" and significantly suppresses errors. Coupling between signal-processing enzyme logic networks and electronic transducers will allow future "smart" bioelectronic devices to respond to immediate physiological changes and provide autonomous signaling/actuation depending on the concentration patterns of the physiological markers.