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1.
Pharmacogenomics ; 24(8): 441-448, 2023 06.
Article in English | MEDLINE | ID: mdl-37307170

ABSTRACT

Aim: Few genome-wide association studies (GWASs) have been conducted to identify predictors of drug concentrations. The authors therefore sought to discover the pharmacogenomic markers involved in metoprolol pharmacokinetics. Patients & methods: The authors performed a GWAS of a cross-sectional study of 993 patients from the Montreal Heart Institute Biobank taking metoprolol. Results: A total of 391 and 444 SNPs reached the significance threshold of 5 × 10-8 for metoprolol and α-OH-metoprolol concentrations, respectively. All were located on chromosome 22 at or near the CYP2D6 gene, encoding CYP450 2D6, metoprolol's main metabolizing enzyme. Conclusion: The results reinforce previous findings of the importance of the CYP2D6 locus for metoprolol concentrations and confirm that large biobanks can be used to identify genetic determinants of drug pharmacokinetics at a GWAS significance level.


Subject(s)
Genome-Wide Association Study , Metoprolol , Humans , Metoprolol/therapeutic use , Metoprolol/pharmacokinetics , Cytochrome P-450 CYP2D6/genetics , Pharmacogenetics , Cross-Sectional Studies
2.
Blood Adv ; 7(13): 3232-3243, 2023 07 11.
Article in English | MEDLINE | ID: mdl-36930802

ABSTRACT

Blood cell production is a complex process, partly genetically determined and influenced by acquired factors. However, there is a paucity of data on how these factors interplay in the context of aging, which is associated with a myeloid proliferation bias, clonal hematopoiesis (CH), and an increased incidence of myeloid cancers. We investigated hereditary and acquired factors underlying blood cell trait variability in a cohort of 2996 related and unrelated women from Quebec aged from 55 to 101 years. We performed a genome-wide association study, evaluated the impact of chronic diseases, and performed targeted deep sequencing of CH driver genes and X-chromosome inactivation (XCI)-based clonality analyses. Multivariable analyses were conducted using generalized linear mixed models. We document that aging is associated with increasing neutrophil and monocyte counts and decreasing lymphocyte counts. Neutrophil counts were influenced by the variants in the region of GSDMA and PSMD3-CSF3, but this association decreased with age; in parallel, older individuals with cardiometabolic comorbidities exhibited significantly higher neutrophil counts (4.1 × 109/L vs 3.83 × 109/L; P < .001) than younger individuals. These age-related diseases were also associated with an increase in other myeloid-derived cells. Neither CH nor XCI clonality correlated with neutrophil counts. In conclusion, we show that neutrophil counts are genetically influenced, but as individuals age, this contribution decreases in favor of acquired factors. Aging is associated with a myeloid proliferation bias which is greater in the presence of cardiometabolic comorbidities but not of CH. These findings support that cell-extrinsic factors may contribute to the myeloid shift possibly through low-grade inflammation.


Subject(s)
Cardiovascular Diseases , Neutrophils , Humans , Female , Aged , Genome-Wide Association Study , Leukocyte Count , Aging/genetics , Pore Forming Cytotoxic Proteins
3.
N Engl J Med ; 388(2): 128-141, 2023 01 12.
Article in English | MEDLINE | ID: mdl-36516086

ABSTRACT

BACKGROUND: The late-onset cerebellar ataxias (LOCAs) have largely resisted molecular diagnosis. METHODS: We sequenced the genomes of six persons with autosomal dominant LOCA who were members of three French Canadian families and identified a candidate pathogenic repeat expansion. We then tested for association between the repeat expansion and disease in two independent case-control series - one French Canadian (66 patients and 209 controls) and the other German (228 patients and 199 controls). We also genotyped the repeat in 20 Australian and 31 Indian index patients. We assayed gene and protein expression in two postmortem cerebellum specimens and two induced pluripotent stem-cell (iPSC)-derived motor-neuron cell lines. RESULTS: In the six French Canadian patients, we identified a GAA repeat expansion deep in the first intron of FGF14, which encodes fibroblast growth factor 14. Cosegregation of the repeat expansion with disease in the families supported a pathogenic threshold of at least 250 GAA repeats ([GAA]≥250). There was significant association between FGF14 (GAA)≥250 expansions and LOCA in the French Canadian series (odds ratio, 105.60; 95% confidence interval [CI], 31.09 to 334.20; P<0.001) and in the German series (odds ratio, 8.76; 95% CI, 3.45 to 20.84; P<0.001). The repeat expansion was present in 61%, 18%, 15%, and 10% of French Canadian, German, Australian, and Indian index patients, respectively. In total, we identified 128 patients with LOCA who carried an FGF14 (GAA)≥250 expansion. Postmortem cerebellum specimens and iPSC-derived motor neurons from patients showed reduced expression of FGF14 RNA and protein. CONCLUSIONS: A dominantly inherited deep intronic GAA repeat expansion in FGF14 was found to be associated with LOCA. (Funded by Fondation Groupe Monaco and others.).


Subject(s)
Cerebellar Ataxia , DNA Repeat Expansion , Introns , Humans , Australia , Canada , Cerebellar Ataxia/genetics , Cerebellar Ataxia/pathology , Friedreich Ataxia/genetics , Friedreich Ataxia/pathology , Introns/genetics , DNA Repeat Expansion/genetics
4.
ESC Heart Fail ; 9(5): 2997-3008, 2022 10.
Article in English | MEDLINE | ID: mdl-35736394

ABSTRACT

AIMS: The Candesartan in Heart failure Assessment of Reduction in Mortality and morbidity (CHARM) programme consisted of three parallel, randomized, double-blind clinical trials comparing candesartan with placebo in patients with heart failure (HF) categorized according to left ventricular ejection fraction and tolerability to an angiotensin-converting enzyme inhibitor. We conducted a pharmacogenomic study of the CHARM trials with the objective of identifying genetic predictors of HF progression and of the efficacy and safety of treatment with candesartan. METHODS: We performed genome-wide association studies in 2727 patients of European ancestry from CHARM-Overall and stratified by CHARM study according to preserved and reduced ejection fraction and according to assignment to the interventional treatment with candesartan. We tested genetic association with the composite endpoint of cardiovascular death or hospitalization for heart failure for drug efficacy in candesartan-treated patients and for HF progression using patients from both candesartan and placebo arms. The safety endpoints for response to candesartan were hyperkalaemia, renal dysfunction, hypotension, and change in systolic blood pressure between baseline and 6 weeks of treatment. To support our observations, we conducted a genome-wide gene-level collapsing analysis from whole-exome sequencing data with the composite cardiovascular endpoint. RESULTS: We found that the A allele (14% allele frequency) of the genetic variant rs66886237 at 8p21.3 near the gene GFRA2 was associated with the composite cardiovascular endpoint in 1029 HF patients with preserved ejection fraction from the CHARM-Preserved study (hazard ratio: 1.91, 95% confidence interval: 1.55-2.35; P = 1.7 × 10-9 ). The association was independent of candesartan treatment, and the genetic variant was not associated with the cardiovascular endpoint in patients with reduced ejection fraction. None of the genome-wide association studies for candesartan safety or efficacy conducted in patients treated with candesartan passed the significance threshold. We found no significant association from the gene-level collapsing analysis. CONCLUSIONS: We have identified a candidate genetic variant potentially predictive of the progression of heart failure in patients with preserved ejection fraction. The findings require further replication, and we cannot exclude the possibility that the results may be chance findings.


Subject(s)
Heart Failure , Ventricular Dysfunction, Left , Humans , Genome-Wide Association Study , Heart Failure/drug therapy , Heart Failure/genetics , Pharmacogenomic Testing , Stroke Volume , Ventricular Dysfunction, Left/drug therapy , Ventricular Function, Left , Randomized Controlled Trials as Topic
5.
Sci Rep ; 11(1): 10847, 2021 05 25.
Article in English | MEDLINE | ID: mdl-34035401

ABSTRACT

We conducted a genome-wide association study of time to remission of COVID-19 symptoms in 1723 outpatients with at least one risk factor for disease severity from the COLCORONA clinical trial. We found a significant association at 5p13.3 (rs1173773; P = 4.94 × 10-8) near the natriuretic peptide receptor 3 gene (NPR3). By day 15 of the study, 44%, 54% and 59% of participants with 0, 1, or 2 copies of the effect allele respectively, had symptom remission. In 851 participants not treated with colchicine (placebo), there was a significant association at 9q33.1 (rs62575331; P = 2.95 × 10-8) in interaction with colchicine (P = 1.19 × 10-5) without impact on risk of hospitalisations, highlighting a possibly shared mechanistic pathway. By day 15 of the study, 46%, 62% and 64% of those with 0, 1, or 2 copies of the effect allele respectively, had symptom remission. The findings need to be replicated and could contribute to the biological understanding of COVID-19 symptom remission.


Subject(s)
COVID-19 Drug Treatment , Colchicine/therapeutic use , Genome-Wide Association Study , Adult , COVID-19/genetics , COVID-19/pathology , COVID-19/virology , Chromosomes, Human, Pair 5/genetics , Chromosomes, Human, Pair 9/genetics , Double-Blind Method , Female , Gene Frequency , Genotype , Humans , Male , Middle Aged , Outpatients , Placebo Effect , Proportional Hazards Models , Remission Induction , Risk Factors , SARS-CoV-2/isolation & purification , Severity of Illness Index
6.
Pharmacogenomics J ; 21(4): 446-457, 2021 08.
Article in English | MEDLINE | ID: mdl-33649522

ABSTRACT

We sought to perform a genomic evaluation of the risk of incident cancer in statin users, free of cancer at study entry. Patients who previously participated in two phase IV trials (TNT and IDEAL) with genetic data were used (npooled = 11,196). A GWAS meta-analysis using Cox modeling for the prediction of incident cancer was conducted in the pooled cohort and sex-stratified. rs13210472 (near HLA-DOA gene) was associated with higher risk of incident cancer amongst women with prevalent coronary artery disease (CAD) taking statins (hazard ratio [HR]: 2.66, 95% confidence interval [CI]: 1.88-3.76, P = 3.5 × 10-8). Using the UK Biobank and focusing exclusively on women statin users with CAD (nfemale = 2952), rs13210472 remained significantly associated with incident cancer (HR: 1.71, 95% CI: 1.14-2.56, P = 9.0 × 10-3). The association was not observed in non-statin users. In this genetic meta-analysis, we have identified a variant in women statin users with prevalent CAD that was associated with incident cancer, possibly implicating the human leukocyte antigen pathway.


Subject(s)
HLA Antigens/genetics , Hydroxymethylglutaryl-CoA Reductase Inhibitors/therapeutic use , Neoplasms/diagnosis , Neoplasms/genetics , Adult , Aged , Cohort Studies , Coronary Artery Disease/drug therapy , Coronary Artery Disease/genetics , Female , Genetic Variation/genetics , Genomics/methods , Humans , Male , Middle Aged , Proportional Hazards Models , Randomized Controlled Trials as Topic , Risk Factors
7.
Circ Genom Precis Med ; 14(2): e003183, 2021 04.
Article in English | MEDLINE | ID: mdl-33560138

ABSTRACT

BACKGROUND: The randomized, placebo-controlled COLCOT (Colchicine Cardiovascular Outcomes Trial) has shown the benefits of colchicine 0.5 mg daily to lower the rate of ischemic cardiovascular events in patients with a recent myocardial infarction. Here, we conducted a post hoc pharmacogenomic study of COLCOT with the aim to identify genetic predictors of the efficacy and safety of treatment with colchicine. METHODS: There were 1522 participants of European ancestry from the COLCOT trial available for the pharmacogenomic study of COLCOT trial. The pharmacogenomic study's primary cardiovascular end point was defined as for the main trial, as time to first occurrence of cardiovascular death, resuscitated cardiac arrest, myocardial infarction, stroke, or urgent hospitalization for angina requiring coronary revascularization. The safety end point was time to the first report of gastrointestinal events. Patients' DNA was genotyped using the Illumina Global Screening array followed by imputation. We performed a genome-wide association study in colchicine-treated patients. RESULTS: None of the genetic variants passed the genome-wide association study significance threshold for the primary cardiovascular end point conducted in 702 patients in the colchicine arm who were compliant to medication. The genome-wide association study for gastrointestinal events was conducted in all 767 patients in the colchicine arm and found 2 significant association signals, one with lead variant rs6916345 (hazard ratio, 1.89 [95% CI, 1.52-2.35], P=7.41×10-9) in a locus which colocalizes with Crohn disease, and one with lead variant rs74795203 (hazard ratio, 2.51 [95% CI, 1.82-3.47]; P=2.70×10-8), an intronic variant in gene SEPHS1. The interaction terms between the genetic variants and treatment with colchicine versus placebo were significant. CONCLUSIONS: We found 2 genomic regions associated with gastrointestinal events in patients treated with colchicine. Those findings will benefit from replication to confirm that some patients may have genetic predispositions to lower tolerability of treatment with colchicine.


Subject(s)
Cardiovascular Diseases/drug therapy , Colchicine/therapeutic use , Pharmacogenetics , Aged , Cardiovascular Diseases/pathology , Colchicine/adverse effects , Female , Gastrointestinal Diseases/etiology , Genome-Wide Association Study , Genotype , Humans , Male , Middle Aged , Phosphotransferases/genetics , Placebo Effect , Polymorphism, Single Nucleotide , Proportional Hazards Models , Randomized Controlled Trials as Topic , Treatment Outcome
8.
ESC Heart Fail ; 7(6): 4384-4389, 2020 Dec.
Article in English | MEDLINE | ID: mdl-32869539

ABSTRACT

AIMS: Few investigations have been conducted to identify genetic determinants of common, polygenetic forms of heart failure (HF), and only a limited number of these genetic associations have been validated by multiple groups. METHODS AND RESULTS: We performed a case-control study to further investigate the potential impact of 14 previously reported candidate genes on the risk of HF and specific HF sub-types. We also performed an exploratory genome-wide study. We included 799 patients with HF and 1529 controls. After adjusting for age, sex, and genetic ancestry, we found that the C allele of rs2234962 in BAG3 was associated with a decreased risk of idiopathic dilated cardiomyopathy (odds ratio 0.42, 95% confidence interval 0.25-0.68, P = 0.0005), consistent with a previous report. No association for the other primary variants or exploratory genome-wide study was found. CONCLUSIONS: Our findings provide independent replication for the association between a common coding variant (rs2234962) in BAG3 and the risk of idiopathic dilated cardiomyopathy.

9.
PLoS One ; 15(7): e0236193, 2020.
Article in English | MEDLINE | ID: mdl-32692755

ABSTRACT

BACKGROUND: Naturally occurring human genetic variants provide a valuable tool to identify drug targets and guide drug prioritization and clinical trial design. Ivabradine is a heart rate lowering drug with protective effects on heart failure despite increasing the risk of atrial fibrillation. In patients with coronary artery disease without heart failure, the drug does not protect against major cardiovascular adverse events prompting questions about the ability of genetics to have predicted those effects. This study evaluates the effect of a variant in HCN4, ivabradine's drug target, on safety and efficacy endpoints. METHODS: We used genetic association testing and Mendelian randomization to predict the effect of ivabradine and heart rate lowering on cardiovascular outcomes. RESULTS: Using data from the UK Biobank and large GWAS consortia, we evaluated the effect of a heart rate-reducing genetic variant at the HCN4 locus encoding ivabradine's drug target. These genetic association analyses showed increases in risk for atrial fibrillation (OR 1.09, 95% CI: 1.06-1.13, P = 9.3 ×10-9) in the UK Biobank. In a cause-specific competing risk model to account for the increased risk of atrial fibrillation, the HCN4 variant reduced incident heart failure in participants that did not develop atrial fibrillation (HR 0.90, 95% CI: 0.83-0.98, P = 0.013). In contrast, the same heart rate reducing HCN4 variant did not prevent a composite endpoint of myocardial infarction or cardiovascular death (OR 0.99, 95% CI: 0.93-1.04, P = 0.61). CONCLUSION: Genetic modelling of ivabradine recapitulates its benefits in heart failure, promotion of atrial fibrillation, and neutral effect on myocardial infarction.


Subject(s)
Ivabradine/pharmacology , Models, Genetic , Randomized Controlled Trials as Topic , Adult , Aged , Alleles , Cardiovascular Diseases/physiopathology , Endpoint Determination , Female , Genetic Variation , Genome-Wide Association Study , Heart Rate/drug effects , Heart Rate/genetics , Humans , Hyperpolarization-Activated Cyclic Nucleotide-Gated Channels/genetics , Male , Mendelian Randomization Analysis , Middle Aged , Muscle Proteins/genetics , Potassium Channels/genetics , Risk Factors
10.
Blood Adv ; 4(11): 2430-2438, 2020 06 09.
Article in English | MEDLINE | ID: mdl-32492156

ABSTRACT

Clonal hematopoiesis of indeterminate potential (CHIP) is predictive of hematological cancers and cardiovascular diseases, but the etiology of CHIP initiation and clonal expansion is unknown. Several lines of evidence suggest that proinflammatory cytokines may favor mutated hematopoietic stem cell expansion. To investigate the potential link between inflammation and CHIP, we performed targeted deep sequencing of 11 genes previously implicated in CHIP in 1887 subjects aged >70 years from the Montreal Heart Institute Biobank, of which 1359 had prior coronary artery disease (CAD), and 528 controls did not. We assessed association of CHIP with log transformed high-sensitivity C-reactive protein (hs-CRP), a validated biomarker of inflammation. CHIP was identified in 427 of the 1887 subjects (22.6%). CHIP mutations were more frequently identified in DNMT3A (11.6%) and TET2 (6.1%), with a higher proportion of TET2 mutations occurring in controls than in patients with CAD (9.0% vs 4.9%, P < .001). CHIP carriers had 21% higher hs-CRP levels compared with their noncarrier counterparts (eß = 1.21, 95% confidence interval [CI]: 1.08 to 1.36; P = .001). A similar effect was observed in the subgroup of patients with known CAD (eß = 1.22, 95% CI: 1.06 to 1.41; P = .005). These findings confirm the association between inflammation and CHIP. This association may open investigational avenues aimed at documenting mechanisms linking inflammation to clonal progression and ultimately supports prevention interventions to attenuate CHIP's impact on cardiovascular disease and cancer.


Subject(s)
C-Reactive Protein , Clonal Hematopoiesis , Hematopoiesis , Percutaneous Coronary Intervention , Aged , Angiotensin Receptor Antagonists , Angiotensin-Converting Enzyme Inhibitors , Hematopoiesis/genetics , Hematopoietic Stem Cells , Humans , Male
11.
Am J Prev Med ; 58(3): 407-417, 2020 03.
Article in English | MEDLINE | ID: mdl-31952941

ABSTRACT

INTRODUCTION: Family Medicine Groups, implemented in Quebec in 2002, are interprofessional primary care teams designed to improve timely access to high-quality primary care. This study investigates whether Family Medicine Groups increased rates of guideline-recommended screenings for 3 chronic diseases: colorectal cancer (colonoscopy/sigmoidoscopy), breast cancer (mammography), and osteoporosis (bone mineral density testing). METHODS: Using population-based administrative health data from the provincial insurer (2000-2010), the authors examined elderly and chronically ill patients who registered with a general practitioner in the first 15 months of the Family Medicine Group policy. Propensity score weighting and a difference-in-differences model estimated differential change in biennial screening rates among Family Medicine Group and non-Family Medicine Group patients over 5 years of follow-up (analysis, 2016-2018). RESULTS: Rates of mammography, colonoscopy/sigmoidoscopy, and bone mineral density testing increased after patient registration with a general practitioner, similarly for both Family Medicine Group and non-Family Medicine Group patients. Colonoscopy/sigmoidoscopy rates increased by 9.7% and 10.4% for Family Medicine Group and non-Family Medicine Group patients, mammography rates by 5.3% and 3.4%, and bone mineral density testing by 4.2% and 7.1%. Difference-in-differences estimates showed no detectable effect of Family Medicine Groups on disease screening rates: -0.06 percentage points (95% CI= -0.32, 0.20) for colonoscopy/sigmoidoscopy, 1.01 percentage points (95% CI= -0.25, 2.27) for mammography, and -0.32 (95% CI= -0.71, -0.07) for bone mineral density testing. CONCLUSIONS: This study found no evidence that Family Medicine Groups affected screening rates for these 3 chronic diseases. Limitations in the implementation of the Family Medicine Group policy in its early years may have contributed to this lack of impact. Interprofessional primary care teams may need to include elements other than organizational changes to increase disease prevention efforts.


Subject(s)
Breast Neoplasms/diagnosis , Colorectal Neoplasms/diagnosis , Family Practice/statistics & numerical data , Mass Screening/statistics & numerical data , Osteoporosis/diagnosis , Aged , Aged, 80 and over , Colonoscopy/statistics & numerical data , Early Detection of Cancer , Female , Humans , Male , Mammography/statistics & numerical data , Mass Screening/methods , Middle Aged , Practice Guidelines as Topic , Primary Health Care , Propensity Score , Quebec , Retrospective Studies , Sigmoidoscopy/statistics & numerical data
12.
J Infect Dis ; 221(6): 878-881, 2020 03 02.
Article in English | MEDLINE | ID: mdl-31621866

ABSTRACT

Approximately 1% of people worldwide carry a copy of the human herpesvirus 6A or 6B (HHV-6A/B) in every cell of their body. This condition is referred to as inherited chromosomally integrated HHV-6A/B (iciHHV-6A/B). The mechanisms leading to iciHHV-6A/B chromosomal integration are yet to be identified. A recent report suggested that the rs73185306 C/T single-nucleotide polymorphism (SNP) represents a favorable predisposing factor leading to HHV-6A/B integration. After genotype analysis of an independent cohort (N = 11 967), we report no association between the rs73185306 C/T SNP and HHV-6A/B chromosomal integration (odds ratio, 0.90 [95% confidence interval, .54-1.51]; P = .69).


Subject(s)
Genetic Predisposition to Disease , Herpesvirus 6, Human/genetics , Point Mutation , Case-Control Studies , Cohort Studies , DNA, Viral/genetics , Humans , Reproducibility of Results , Risk Factors , Virus Integration
13.
Can Fam Physician ; 65(8): 559-566, 2019 Aug.
Article in English | MEDLINE | ID: mdl-31413028

ABSTRACT

OBJECTIVE: To identify the mechanisms associated with success and failure of chronic disease prevention and management (CDPM) programs, as well as their key contexts. DESIGN: Realist synthesis. SETTING: Six primary care CDPM programs funded between 2011 and 2013 in Quebec. PARTICIPANTS: Patients, health providers, program leaders, and other stakeholders involved in CDPM programs. METHODS: A collaborative research process was implemented, involving representatives from the executive and advisory committees: researchers, health care providers, decision makers, and patients and families. Leaders were asked to provide all documents related to their programs to the research team. The documents were selected depending on their relevance and rigour. The thematic analysis of each program consisted of identifying the outcomes and mechanisms, as well as the specific contexts associated with these outcomes. Results for each program were validated by its leader before synthesizing the results of all programs together. MAIN FINDINGS: A total of 108 documents (eg, grant applications, scientific reports) were collected from the programs. Positive and negative outcomes were observed at the patient, health care provider, and health care system levels. Four main mechanism categories were associated with outcomes: patient-centred interdisciplinary care; self-management support and a motivational approach; professional support; and care coordination and relationships with partners. The main contextual factors that influenced the successes of these mechanisms were related to patients (multimorbidity, involvement of family caregivers), to health care providers (professional training, culture of interprofessional collaboration, mobilization of family physician), and to health care organizations (coordination between services, history of collaboration between partners, funding). CONCLUSION: This study confirms the essential role of patient-centred interdisciplinary care; self-management support and a motivational approach; professional support; and care coordination and relationships with partners when caring for patients with chronic diseases. It constitutes a relevant contribution for stakeholders involved in primary care transformation and should be used to inform the sustainability and scaling up of CDPM programs.


Subject(s)
Chronic Disease/prevention & control , Patient-Centered Care/methods , Primary Health Care/methods , Chronic Disease/psychology , Chronic Disease/therapy , Health Personnel/psychology , Humans , Outcome and Process Assessment, Health Care , Professional-Patient Relations , Qualitative Research , Quebec , Risk Factors , Self Care/methods , Self Efficacy , Stakeholder Participation
14.
Pharmacogenomics J ; 19(2): 147-156, 2019 04.
Article in English | MEDLINE | ID: mdl-29298995

ABSTRACT

Warfarin is primarily metabolized by cytochrome 2C9, encoded by gene CYP2C9. Here, we investigated whether variants in nuclear receptor genes which regulate the expression of CYP2C9 are associated with warfarin response. We used data from 906 warfarin users from the Quebec Warfarin Cohort (QWC) and tested the association of warfarin dose requirement at 3 months following the initiation of therapy in nine nuclear receptor genes: NR1I3, NR1I2, NR3C1, ESR1, GATA4, RXRA, VDR, CEBPA, and HNF4A. Three correlated SNPs in the VDR gene (rs4760658, rs11168292, and rs11168293) were associated with dose requirements of warfarin (P = 2.68 × 10-5, P = 5.81 × 10-4, and P = 5.94 × 10-4, respectively). Required doses of warfarin were the highest for homozygotes of the minor allele at the VDR variants (P < 0.0026). Variants in the VDR gene were associated with the variability in response to warfarin, emphasizing the possible clinical relevance of nuclear receptor gene variants on the inter-individual variability in drug metabolism.


Subject(s)
Blood Coagulation/genetics , Genome-Wide Association Study , Receptors, Calcitriol/genetics , Warfarin/metabolism , Adult , Aged , Aged, 80 and over , Alleles , Anticoagulants/administration & dosage , Anticoagulants/adverse effects , Anticoagulants/metabolism , CCAAT-Enhancer-Binding Proteins/genetics , Constitutive Androstane Receptor , Cytochrome P-450 CYP2C9/genetics , Dose-Response Relationship, Drug , Estrogen Receptor alpha/genetics , Female , GATA4 Transcription Factor/genetics , Genotype , Hepatocyte Nuclear Factor 4/genetics , Humans , Male , Middle Aged , Polymorphism, Single Nucleotide/genetics , Pregnane X Receptor/genetics , Quebec/epidemiology , Receptors, Calcitriol/metabolism , Receptors, Cytoplasmic and Nuclear/genetics , Receptors, Glucocorticoid/genetics , Retinoid X Receptor alpha/genetics , Vitamin K/genetics , Vitamin K/metabolism , Warfarin/administration & dosage , Warfarin/adverse effects
15.
Blood ; 132(3): 277-280, 2018 07 19.
Article in English | MEDLINE | ID: mdl-29764839

ABSTRACT

We analyzed DNA from polymorphonuclear (PMN) cells, monocytes, B cells, and T cells of 107 individuals with clonal hematopoiesis of indeterminate potential (CHIP) to perform lineage restriction analysis of different gene mutations. Three lineage categories were defined: myeloid (PMN with or without monocytes), myelolympho-B (myeloid and B cells), and multipotent (myeloid, B and T cells). Six individuals with aberrant patterns were excluded from analysis. Ninety-four had a single mutation (56 in DNMT3A, 24 in TET2, 7 in other genes [JAK2, ASXL1, CBL or TP53]). Fourteen had multiple mutations. The lineage restriction patterns of single DNMT3A- or TET2-mutated individuals were different. The proportion of myeloid restricted mutations was higher for TET2 (54.2%, 13 of 24) than for DNMT3A (23.2%, 13 of 56) (P < .05). It was similar for myelolympho-B category but with a 1.5 fold greater proportion of myeloid cells for TET2 individuals (P < .05). Importantly, 0% (0 of 24) of the individuals with TET2 mutation in the multipotent category in contrast to 35.7% (20 of 56) for DNMT3A (P < .01). The clone size predicted multipotent pattern for DNMT3A suggesting a time delay for extensive lineage clonal dominance. These distinctive features may be important in deciphering the transformation mechanisms of these frequent mutations.


Subject(s)
Cell Lineage/genetics , DNA (Cytosine-5-)-Methyltransferases/genetics , DNA-Binding Proteins/genetics , Multipotent Stem Cells/metabolism , Proto-Oncogene Proteins/genetics , Aged , Aged, 80 and over , Biomarkers , Cell Differentiation , Chromatin Immunoprecipitation , Clonal Evolution/genetics , DNA Methyltransferase 3A , Dioxygenases , Female , High-Throughput Nucleotide Sequencing , Humans , Male , Middle Aged , Models, Biological , Mutation
16.
Pharmacogenomics ; 19(7): 599-612, 2018 05.
Article in English | MEDLINE | ID: mdl-29701105

ABSTRACT

AIM: To evaluate the impact of AGTR1 A1166C (rs5186) on the response to candesartan in patients with heart failure. MATERIALS & METHODS: Prospective, multicentre, open-label study. We studied 299 symptomatic patients with heart failure presenting a left ventricular ejection fraction ≤40%. RESULTS: Reductions in the primary end points of natriuretic peptides were not significantly associated with AGTR1 A1166C. Nevertheless, carrying the 1166C allele was associated with a greater compensatory increase in renin activity (p = 0.037) after 16 weeks of treatment with candesartan and a more modest effect on aldosterone concentrations (p = 0.022). CONCLUSION: AGTR1 1166C carriers may experience a greater long-term compensatory renin-angiotensin-aldosterone system activation following treatment with candesartan. Whether these associations ultimately influence clinical outcomes requires investigation. Clinicaltrials.gov : NCT00400582.


Subject(s)
Angiotensin II Type 1 Receptor Blockers/therapeutic use , Benzimidazoles/therapeutic use , Heart Failure/drug therapy , Polymorphism, Single Nucleotide , Receptor, Angiotensin, Type 1/genetics , Renin-Angiotensin System/drug effects , Tetrazoles/therapeutic use , Aged , Angiotensin II Type 1 Receptor Blockers/pharmacokinetics , Benzimidazoles/pharmacokinetics , Biomarkers/blood , Biphenyl Compounds , Blood Pressure/drug effects , Female , Heart Failure/blood , Heart Failure/genetics , Humans , Kidney Function Tests , Male , Natriuretic Peptide, Brain/blood , Peptide Fragments/blood , Pharmacogenetics , Prospective Studies , Renin-Angiotensin System/genetics , Tetrazoles/pharmacokinetics , Treatment Outcome
17.
Clin Cardiol ; 41(5): 576-585, 2018 May.
Article in English | MEDLINE | ID: mdl-29542828

ABSTRACT

Over- and undercoagulation with warfarin are associated with hemorrhagic and thromboembolic events, respectively. Genetic and clinical factors affect warfarin response, and the causes of this variability remain unclear. We present descriptive statistics and test for predictors of poor anticoagulation control. The Quebec Warfarin Cohort (QWC) comprises 1059 new warfarin users, with prospective follow-up using telephone questionnaires every 3 months for 1 year, and using healthcare administrative databases (RAMQ and Med-Echo) for 5 years prior to cohort entry and up to 10 years following active patient participation. Genetic material was collected, and genotyping of CYP2C9 and VKORC1 genes was conducted. Measured outcomes included the percentage of time patients spent within therapeutic range, anticoagulation control, warfarin dose, bleeding, and thromboembolic events. We report baseline characteristics and outcomes after 1 year of follow-up. Poor anticoagulation control was defined as time in therapeutic range <60% in the 3- to 12-month interval. Participants had a mean age of 71 years, and 62% were men. The most common indication for warfarin was atrial fibrillation (87%). Mean time in therapeutic range was 56% (±25%) in the 3 months following warfarin initiation, and 70% (±21%) in the 3- to 12-month interval. During follow-up, the rate of stroke or systemic embolism was 1.8 events per 100 person-years; for major bleeding events, 3.3 events per 100 person-years. Independent predictors of poor anticoagulation control were chronic kidney disease, heart failure, dyslipidemia, and age. The QWC represents a good research cohort to investigate clinical and genetic factors in a warfarin-anticoagulated population.


Subject(s)
Anticoagulants/administration & dosage , Blood Coagulation/drug effects , Thromboembolism/prevention & control , Warfarin/administration & dosage , Aged , Aged, 80 and over , Anticoagulants/adverse effects , Clinical Protocols , Cytochrome P-450 CYP2C9/genetics , Cytochrome P-450 CYP2C9/metabolism , Databases, Factual , Female , Health Care Surveys , Hemorrhage/chemically induced , Humans , Life Style , Male , Middle Aged , Pharmacogenetics , Pharmacogenomic Variants , Preliminary Data , Prospective Studies , Quebec , Research Design , Risk Factors , Thromboembolism/blood , Thromboembolism/etiology , Time Factors , Treatment Outcome , Vitamin K Epoxide Reductases/genetics , Vitamin K Epoxide Reductases/metabolism , Warfarin/adverse effects
18.
Health Promot Chronic Dis Prev Can ; 38(2): 64-77, 2018 Feb.
Article in English, French | MEDLINE | ID: mdl-29443486

ABSTRACT

INTRODUCTION: In 2011, the Agence de la santé et des services sociaux de Montréal (ASSSM), in partnership with the region's Centres de santé et de services sociaux (CSSS), coordinated the implementation of a program on cardiometabolic risk based on the Chronic Care Model. The program, intended for patients suffering from diabetes or hypertension, involved a series of individual follow-up appointments, group classes and exercise sessions. Our study assesses the impact on patient health outcomes of variations in the implementation of some aspects of the program among the six CSSSs taking part in the study. METHODS: The evaluation was carried out using a quasi-experimental "before and after" design. Implementation variables were constructed based on data collected during the implementation analysis regarding resources, compliance with the clinical process set out in the regional program, the program experience and internal coordination within the care team. Differences in differences using propensity scores were calculated for HbA1c results, achieving the blood pressure (BP) target, and two lifestyle targets (exercise level and carbohydrate distribution) at the 6- and 12-month follow-ups, based on greater or lesser patient exposure to the implementation of various aspects of the program under study. RESULTS: The results focus on 1185 patients for whom we had data at the 6-month follow- up and the 992 patients from the 12-month follow-up. The difference in differences analysis shows no clear association between the extent of implementation of the various aspects of the program under study and patient health outcomes. CONCLUSION: The program produces effects on selected health indicators independent of variations in program implementation among the CSSSs taking part in the study. The results suggest that the effects of this type of program are more highly dependent on the delivery of interventions to patients than on the organizational aspects of its implementation.


INTRODUCTION: En 2011, l'Agence de la santé et des services sociaux de Montréal (ASSSM), en partenariat avec les Centres de santé et de services sociaux (CSSS) de la région, a coordonné la mise en oeuvre d'un programme sur le risque cardiométabolique s'inspirant du Chronic Care Model. Ce programme destiné aux patients diabétiques ou hypertendus comporte une séquence de suivis individuels, des cours de groupe et des séances d'activité physique. Notre étude évalue l'impact de la variation dans l'implantation de certains aspects du programme entre les six CSSS participant à l'étude sur les résultats de santé des patients. MÉTHODOLOGIE: L'évaluation a été réalisée à l'aide d'un devis quasi-expérimental « avantaprès ¼. Des variables d'implantation ont été construites à partir de données colligées lors de l'analyse d'implantation concernant les ressources, la conformité au processus clinique prévu dans le programme régional, l'expérience du programme et la coordination interne au sein de l'équipe de soins. Des différences de différences utilisant des scores de propension ont été calculées pour les résultats d'HbA1c, l'atteinte de la cible de tension artérielle (TA) et de deux cibles d'habitudes de vie (niveau d'activité physique et répartition des glucides alimentaires) à 6 mois et à 12 mois de suivi, en fonction de l'exposition des patients à un degré plus ou moins important d'implantation de divers aspects du programme à l'étude. RÉSULTATS: Les résultats portent sur les 1 185 patients pour lesquels on disposait de données de suivi à 6 mois et les 992 patients pour le suivi à 12 mois. Les analyses de différences de différences ne révèlent aucune association claire entre le degré d'implantation des divers aspects du programme à l'étude et les résultats de santé chez les patients. CONCLUSION: Le programme produit des effets sur les indicateurs de santé sélectionnés indépendamment des variations dans l'implantation du programme entre les CSSS participant à l'étude. Les résultats suggèrent que les effets d'un tel programme sont davantage tributaires de la prestation des interventions auprès des patients que des aspects organisationnels liés à son implantation.


Subject(s)
Cardiovascular Diseases/prevention & control , Cardiovascular Diseases/therapy , Delivery of Health Care, Integrated/organization & administration , Organizational Objectives , Risk Management/organization & administration , Adult , Aged , Chronic Disease/prevention & control , Chronic Disease/therapy , Diabetes Mellitus/prevention & control , Diabetes Mellitus/therapy , Female , Health Plan Implementation , Humans , Hypertension/prevention & control , Hypertension/therapy , Male , Middle Aged , Outcome Assessment, Health Care , Program Development , Program Evaluation , Quebec
19.
Ophthalmic Genet ; 39(1): 73-79, 2018.
Article in English | MEDLINE | ID: mdl-28945494

ABSTRACT

PURPOSE: To investigate the clinical characteristics and genetic basis of inherited retinal degeneration (IRD) in six unrelated pedigrees from Mexico. METHODS: A complete ophthalmic evaluation including measurement of visual acuities, Goldman kinetic or Humphrey dynamic perimetry, Amsler test, fundus photography, and color vision testing was performed. Family history and blood samples were collected from available family members. DNA from members of two pedigrees was examined for known mutations using the APEX ARRP genotyping microarray and one pedigree using the APEX LCA genotyping microarray. The remaining three pedigrees were analyzed using a custom-designed targeted capture array covering the exons of 233 known retinal degeneration genes. Sequencing was performed on Illumina HiSeq. Reads were mapped against hg19, and variants were annotated using GATK and filtered by exomeSuite. Segregation and ethnicity-matched control sample analyses were performed by dideoxy sequencing. RESULTS: Six pedigrees with IRD were analyzed. Nine rare or novel, potentially pathogenic variants segregating with the phenotype were detected in IMPDH1, USH2A, RPE65, ABCA4, and FAM161A genes. Among these, six were known mutations while the remaining three changes in USH2A, RPE65, and FAM161A genes have not been previously reported to be associated with IRD. Analysis of 100 ethnicity-matched controls did not detect the presence of these three novel variants indicating, these are rare variants in the Mexican population. CONCLUSIONS: Screening patients diagnosed with IRD from Mexico identified six known mutations and three rare or novel potentially damaging variants in IMPDH1, USH2A, RPE65, ABCA4, and FAM161A genes that segregated with disease.


Subject(s)
Eye Proteins/genetics , Mutation , Retinal Degeneration/genetics , ATP-Binding Cassette Transporters/genetics , Adolescent , Adult , Aged , Child, Preschool , DNA Mutational Analysis , Extracellular Matrix Proteins/genetics , Female , Genetic Determinism , Genotyping Techniques , Humans , IMP Dehydrogenase/genetics , Male , Mexico/epidemiology , Middle Aged , Pedigree , Phenotype , Retinal Degeneration/ethnology , Exome Sequencing , cis-trans-Isomerases/genetics
20.
Can Fam Physician ; 63(9): e381-e388, 2017 Sep.
Article in English | MEDLINE | ID: mdl-28904048

ABSTRACT

OBJECTIVE: To assess the degree of collaboration in primary health care organizations between FPs and other health care professionals; and to identify organizational factors associated with such collaboration. DESIGN: Cross-sectional survey. SETTING: Primary health care organizations in the Montreal and Monteregie regions of Quebec. PARTICIPANTS: Physicians or administrative managers from 376 organizations. MAIN OUTCOME MEASURES: Degree of collaboration between FPs and other specialists and between FPs and nonphysician health professionals. RESULTS: Almost half (47.1%) of organizations reported a high degree of collaboration between FPs and other specialists, but a high degree of collaboration was considerably less common between FPs and nonphysician professionals (16.5%). Clinic collaboration with a hospital and having more patients with at least 1 chronic disease were associated with higher FP collaboration with other specialists. The proportion of patients with at least 1 chronic disease was the only factor associated with collaboration between FPs and nonphysician professionals. CONCLUSION: There is room for improvement regarding interprofessional collaboration in primary health care, especially between FPs and nonphysician professionals. Organizations that manage patients with more chronic diseases collaborate more with both non-FP specialists and nonphysician professionals.


Subject(s)
Cooperative Behavior , Family Practice/standards , Interprofessional Relations , Physicians, Family/organization & administration , Attitude of Health Personnel , Cross-Sectional Studies , Delivery of Health Care/organization & administration , Humans , Logistic Models , Quebec , Specialization , Surveys and Questionnaires
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