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Protein Pept Lett ; 17(12): 1536-41, 2010 Dec.
Article in English | MEDLINE | ID: mdl-20937036

ABSTRACT

Information about interactions between enzymes and small molecules is important for understanding various metabolic bioprocesses. In this article we applied a majority voting system to predict the interactions between enzymes and small molecules in the metabolic pathways, by combining several classifiers including AdaBoost, Bagging and KNN together. The advantage of such a strategy is based on the principle that a predictor based majority voting systems usually provide more reliable results than any single classifier. The prediction accuracies thus obtained on a training dataset and an independent testing dataset were 82.8% and 84.8%, respectively. The prediction accuracy for the networking couples in the independent testing dataset was 75.5%, which is about 4% higher than that reported in a previous study. The web-server for the prediction method presented in this paper is available at http://chemdata.shu.edu.cn/small-enz.


Subject(s)
Computer Simulation , Enzymes/chemistry , Metabolic Networks and Pathways , Algorithms , Models, Biological , Models, Chemical , Protein Binding
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