ABSTRACT
The nature of the interactions between Plasmodium falciparum dihydrofolate reductase (pfDHFR) and antimalarial antifolates, i.e., pyrimethamine (Pyr), cycloguanil (Cyc) and WR99210 including some of their analogues, was investigated by molecular modeling in conjunction with the determination of the inhibition constants (Ki). A three-dimensional structural model of pfDHFR was constructed using multiple sequence alignment and homology modeling procedures, followed by extensive molecular dynamics calculations. Mutations at amino acid residues 16 and 108 known to be associated with antifolate resistance were introduced into the structure, and the interactions of the inhibitors with the enzymes were assessed by docking and molecular dynamics for both wild-type and mutant DHFRs. The Ki values of a number of analogues tested support the validity of the model. A 'steric constraint' hypothesis is proposed to explain the structural basis of the antifolate resistance.
Subject(s)
Drug Resistance , Folic Acid Antagonists/pharmacology , Pyrimethamine/pharmacology , Tetrahydrofolate Dehydrogenase/drug effects , Triazines/pharmacology , Amino Acid Sequence , Folic Acid Antagonists/chemistry , Models, Molecular , Molecular Sequence Data , Molecular Structure , Proguanil , Pyrimethamine/chemistry , Sequence Homology, Amino Acid , Tetrahydrofolate Dehydrogenase/chemistry , Triazines/chemistryABSTRACT
The Ala16Val+Ser108Thr (A16V+S108T) mutant of the Plasmodium falciparum dihydrofolate reductase (DHFR) is a key mutant responsible for cycloguanil-resistant malaria due to steric interaction between Val-16 and one of the C-2 methyl groups of cycloguanil. 4,6-Diamino-1,2-dihydrotriazines have been prepared, in which both methyl groups of cycloguanil are replaced by H or by H and an alkyl or phenyl group, and their inhibition constants against wild-type and mutant DHFR determined. The S108T mutation is considered to decrease cycloguanil binding further through the effect on the orientation of the p-chlorophenyl group. By moving the p-chloro-substituent to the m-position in the chlorophenyl group, the activity against the A16V+S108T mutant enzyme is improved, and this effect is reinforced by the p-chloro substituent in the 3, 4-dichlorophenyl group. A lead compound has been found with inhibitory activity similar to that of cycloguanil against the wild-type DHFR and about 120-fold more effective than cycloguanil against the A16V+S108T mutant enzyme. The activity of this compound against P. falciparum clone (T9/94 RC17) which harbors the A16V+S108T DHFR is about 85-fold greater than cycloguanil.
Subject(s)
Antimalarials/chemical synthesis , Folic Acid Antagonists/chemical synthesis , Plasmodium falciparum/drug effects , Plasmodium falciparum/enzymology , Tetrahydrofolate Dehydrogenase/metabolism , Triazines/chemical synthesis , Triazines/pharmacology , Amino Acid Substitution , Animals , Antimalarials/chemistry , Antimalarials/pharmacology , Drug Resistance , Folic Acid Antagonists/chemistry , Folic Acid Antagonists/pharmacology , Mutation , Proguanil , Structure-Activity Relationship , Tetrahydrofolate Dehydrogenase/genetics , Triazines/chemistryABSTRACT
TentaGel, ArgoGel and PEGA resins were evaluated for on-bead biological screening, using a fluorescently-labelled peptide attached to each and assayed for papain activity. Peptide attached to PEGA was cleaved in near quantitative yield at the expected sites, whilst an identical sequence on TentaGel and ArgoGel beads was hydrolysed in very low yields and nonspecifically on ArgoGel. The compatibility of PEGA with enzymes was further demonstrated by the determination of subsite specificities of papain and chymotrypsin using PEGA-bound peptide libraries, which proved to be similar to those observed in free solution.
Subject(s)
Chymotrypsin/metabolism , Papain/metabolism , Polyethylene Glycols , Resins, Plant , Peptides/metabolismABSTRACT
In view of the widespread use of TentaGel resin beads for the synthesis of combinatorial libraries, the properties of TentaGel resin have been examined using a combination of confocal laser microscopy and NMR spectroscopy. Evidence is presented that trypsin, a 23.5-kDa enzyme, can penetrate to the core of 90-microns TentaGel beads, and that the matrix of such beads permits molecular motion at a similar rate to that in solution. The beads act as a separate gel phase rather than as a porous solid. These conclusions have important implications for the bioassay of on-bead combinatorial chemical libraries.
