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1.
Entropy (Basel) ; 25(8)2023 Aug 18.
Article in English | MEDLINE | ID: mdl-37628259

ABSTRACT

This paper presents a novel hybrid approach for the computational modeling of cardiac perfusion, combining a discrete model of the coronary arterial tree with a continuous porous-media flow model of the myocardium. The constructive constrained optimization (CCO) algorithm captures the detailed topology and geometry of the coronary arterial tree network, while Poiseuille's law governs blood flow within this network. Contrast agent dynamics, crucial for cardiac MRI perfusion assessment, are modeled using reaction-advection-diffusion equations within the porous-media framework. The model incorporates fibrosis-contrast agent interactions and considers contrast agent recirculation to simulate myocardial infarction and Gadolinium-based late-enhancement MRI findings. Numerical experiments simulate various scenarios, including normal perfusion, endocardial ischemia resulting from stenosis, and myocardial infarction. The results demonstrate the model's efficacy in establishing the relationship between blood flow and stenosis in the coronary arterial tree and contrast agent dynamics and perfusion in the myocardial tissue. The hybrid model enables the integration of information from two different exams: computational fractional flow reserve (cFFR) measurements of the heart coronaries obtained from CT scans and heart perfusion and anatomy derived from MRI scans. The cFFR data can be integrated with the discrete arterial tree, while cardiac perfusion MRI data can be incorporated into the continuum part of the model. This integration enhances clinical understanding and treatment strategies for managing cardiovascular disease.

2.
Sci Rep ; 13(1): 11788, 2023 07 21.
Article in English | MEDLINE | ID: mdl-37479707

ABSTRACT

Cardiac Purkinje networks are a fundamental part of the conduction system and are known to initiate a variety of cardiac arrhythmias. However, patient-specific modeling of Purkinje networks remains a challenge due to their high morphological complexity. This work presents a novel method based on optimization principles for the generation of Purkinje networks that combines geometric and activation accuracy in branch size, bifurcation angles, and Purkinje-ventricular-junction activation times. Three biventricular meshes with increasing levels of complexity are used to evaluate the performance of our approach. Purkinje-tissue coupled monodomain simulations are executed to evaluate the generated networks in a realistic scenario using the most recent Purkinje/ventricular human cellular models and physiological values for the Purkinje-ventricular-junction characteristic delay. The results demonstrate that the new method can generate patient-specific Purkinje networks with controlled morphological metrics and specified local activation times at the Purkinje-ventricular junctions.


Subject(s)
Benchmarking , Heart , Humans , Cardiac Conduction System Disease , Heart Conduction System , Heart Ventricles
3.
Behav Brain Res ; 449: 114457, 2023 07 09.
Article in English | MEDLINE | ID: mdl-37116663

ABSTRACT

Very few studies have investigated cognition and impulsivity following mild traumatic brain injury (mTBI) in the general population. Furthermore, the neurobiological mechanisms underlying post-TBI neurobehavioral syndromes are complex and remain to be fully clarified. Herein, we took advantage of machine learning based-modeling to investigate potential biomarkers of mTBI-associated impulsivity. Twenty-one mTBI patients were assessed within one-month post-TBI and their data were compared to 19 healthy controls on measures of impulsivity (Barratt Impulsiveness Scale - BIS), executive functioning, episodic memory, self-report cognitive failures and blood biomarkers of inflammation, vascular and neuronal damage. mTBI patients were significantly more impulsive than controls in BIS total and subscales. Serum levels of sCD40L, Cathepsin D, IL-4, Neuropilin-1, IFN-α2, and Copeptin were associated with impulsivity in mTBI patients. Besides showing that mTBI are associated with impulsivity in non-military people, we unveiled different pathophysiological pathways potentially implicated in mTBI-related impulsivity.


Subject(s)
Brain Concussion , Humans , Brain Concussion/complications , Pilot Projects , Impulsive Behavior/physiology , Biomarkers , Executive Function
5.
Neotrop Entomol ; 50(6): 912-922, 2021 Dec.
Article in English | MEDLINE | ID: mdl-34524615

ABSTRACT

Social wasps present various architectural patterns for their nests, which may differ in shape, size, color, and material used in construction. The distribution pattern of comb cells presented by Mischocyttarus mirificus (Zikán, 1935) is vertical with a single cell of width, resulting in a filiform shape that camouflages in the middle of the substrate. There are few studies regarding this architectural pattern for social wasps and their role in camouflage, and this study aims to detail the nesting habits of this species. In total, 40 colonies were analyzed in their natural habitat and six were dissected in the laboratory. Aspects about the construction of the nests and nesting environment have been described. A test was carried out with nest photographs, to quantify their camouflage percentage within the nesting substrate. The colonies were found mainly in riparian forests where there were elements in the environment that favored their camouflage. According to the nest photograph analysis, their camouflage levels can vary according to the position from which the photograph is taken. It is evident that M. mirificus founders select sites where they can camouflage their colonies, and this gives them advantages in exploring a new environment.


Subject(s)
Wasps , Animals , Ecosystem , Forests , Nesting Behavior
6.
Ocul Immunol Inflamm ; 29(6): 1151-1153, 2021 Aug 18.
Article in English | MEDLINE | ID: mdl-32160085

ABSTRACT

Purpose: To report a case of unilateral acute idiopathic maculopathy (UAIM) following vaccination for type A influenza virus (H1N1).Methods: Clinical, fundus autofluorescence (FAF), fluorescein angiography (FA) and optical coherence tomography (OCT) findings are presented.Results: A 25-year old white male presented with an acute decrease of vision in his left eye eight days after immunization with influenza A vaccine. Clinical evaluation revealed a deep yellowish-white lesion at the macula, early hyperfluorescence at the level of retinal pigment epithelium (RPE), and leakage and staining during the late phase of FA. OCT demonstrated disruption of the photoreceptor ellipsoid zone, as well as heterogeneous reflectivity changes and thickening at the level of the outer retina-RPE. Three months after presentation, fundus examination showed resolution of the yellowish foveal lesion, with persistence of mild RPE atrophic changes.Conclusion: This is the first reported case of UAIM following H1N1 vaccination to date.


Subject(s)
Influenza A Virus, H1N1 Subtype/immunology , Influenza Vaccines/adverse effects , Macular Degeneration/chemically induced , Vaccination/adverse effects , Vision Disorders/chemically induced , Acute Disease , Adult , Fluorescein Angiography , Humans , Influenza, Human/prevention & control , Macular Degeneration/diagnosis , Macular Degeneration/physiopathology , Male , Optical Imaging , Tomography, Optical Coherence , Vision Disorders/diagnosis , Vision Disorders/physiopathology , Visual Acuity/physiology
7.
Ocul Immunol Inflamm ; 28(7): 1040-1048, 2020 Oct 02.
Article in English | MEDLINE | ID: mdl-32657637

ABSTRACT

Syphilis and HIV infection may coexist in the same individual. Ocular syphilis and/or neurosyphilis may develop at any stage of coinfection, with a stronger association between ocular and neurosyphilis in individuals living with HIV, than in HIV-uninfected individuals. The diagnosis of ocular syphilis in HIV-infected and -uninfected patients remains with some controversy due to unspecific clinical manifestations and limited diagnostic tests. Penicillin is the mainstay of treatment of ocular syphilis, but alternative options are warranted. This review describes the epidemiology, pathophysiology, and clinical manifestations, as well as the diagnostic and therapeutic challenges posed by ocular syphilis against the background of HIV coinfection.


Subject(s)
Eye Infections, Bacterial , HIV Infections/complications , Syphilis , Anti-Bacterial Agents/therapeutic use , Eye Infections, Bacterial/complications , Eye Infections, Bacterial/diagnosis , Eye Infections, Bacterial/drug therapy , Humans , Penicillins/therapeutic use , Syphilis/complications , Syphilis/diagnosis , Syphilis/drug therapy , Syphilis Serodiagnosis
8.
Front Physiol ; 10: 177, 2019.
Article in English | MEDLINE | ID: mdl-30949059

ABSTRACT

This work presents a new mathematical model to describe cardiac perfusion in the myocardium as acquired by cardiac magnetic resonance (CMR) perfusion exams. The combination of first pass (or contrast-enhanced CMR) and late enhancement CMR is a widely used non-invasive exam that can identify abnormal perfused regions of the heart via the use of a contrast agent (CA). The exam provides important information to the diagnosis, management, and prognosis of ischemia and infarct: perfusion on different regions, the status of microvascular structures, the presence of fibrosis, and the relative volume of extracellular space. This information is obtained by inferring the spatiotemporal dynamics of the contrast in the myocardial tissue from the acquired images. The evaluation of these physiological parameters plays an important role in the assessment of myocardial viability. However, the nature of cardiac physiology poses great challenges in the estimation of these parameters. Briefly, these are currently estimated qualitatively via visual inspection of images and comparison of relative brightness between different regions of the heart. Therefore, there is a great urge for techniques that can help to quantify cardiac perfusion. In this work, we propose a new mathematical model based on multidomain flow in porous media. The model is based on a system of partial differential equations. Darcy's law is used to obtain the pressure and velocity distribution. CA dynamics is described by reaction-diffusion-advection equations in the intravascular space and in the interstitial space. The interaction of fibrosis and the CA is also considered. The new model treats the domains as anisotropic media and imposes a closed loop of intravascular flow, which is necessary to reproduce the recirculation of the CA. The model parameters were adjusted to reproduce clinical data. In addition, the model was used to simulate different scenarios: normal perfusion; endocardial ischemia due to stenosis in a coronary artery in the epicardium; and myocardial infarct. Therefore, the computational model was able to correlate anatomical features, stenosis and the presence of fibrosis, with functional ones, cardiac perfusion. Altogether, the results suggest that the model can support the process of non-invasive cardiac perfusion quantification.

9.
J Ophthalmic Inflamm Infect ; 9(1): 2, 2019 Jan 18.
Article in English | MEDLINE | ID: mdl-30659387

ABSTRACT

BACKGROUND: Syphilitic uveitis is reemerging globally, may lead to any type of intraocular inflammation, and is potentially sight-threatening. We aim to characterize clinical features and prognostic factors in patients with syphilitic posterior uveitis. METHODS: Retrospective chart review at two tertiary university-based referral centers in Brazil. Clinical data, laboratory results, and treatment outcomes were analyzed. Statistical analysis was performed using Fisher's exact test for categorical variables and Mann-Whitney U test for continuous variables. RESULTS: Forty-four patients (81 eyes) were consecutively diagnosed with syphilitic posterior uveitis between March 2011 and April 2013.Thirty-one were male (70.5%) and the mean age was 43.8 years (range 15-81). HIV confection was disclosed in 12 patients (29.3%). The most prevalent finding was vitritis (85.2%), followed by retinal involvement (76.4%) and optic disc abnormalities (63.5%). After treatment, mean visual acuity improved from 1.2 (20/320) to 0.6 (20/80; median 20/30), but 19 eyes (23.5%) persisted with ≤ 1.0 (20/200). Factors associated with final visual acuity ≤ 1.0 despite therapy were prior use of systemic corticosteroids (p = 0.001), higher Venereal Disease Research Laboratory titers (p = 0.004), longer duration of symptoms (p = 0.024), and worse initial VA (p < 0.001). CONCLUSIONS: Syphilitic uveitis is reemerging. Delayed diagnosis and inadvertent use of systemic corticosteroids are potentially modifiable prognostic factors to be considered for possibly improving outcomes.

10.
Sci Rep ; 8(1): 15902, 2018 Oct 23.
Article in English | MEDLINE | ID: mdl-30348954

ABSTRACT

A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has not been fixed in the paper.

11.
Sci Rep ; 8(1): 12071, 2018 08 13.
Article in English | MEDLINE | ID: mdl-30104765

ABSTRACT

Recent reports from different world regions suggest ocular syphilis is re-emerging, in parallel with an increasing incidence of the systemic infection globally. We conducted a large observational study of 127 persons consecutively treated for ocular syphilis at public medical centers in Brazil over a 2.5-year period ending July 2015. Of 104 individuals serologically tested for human immunodeficiency virus (HIV), 34.6% were positive. Ophthalmological evaluations included measurement of Snellen visual acuity and intraocular pressure, and assessment of inflammation by slit lamp examination and dilated posterior eye examination. Involvements in 214 eyes were anterior (6.1%), intermediate (8.4%), posterior (76.2%) and pan- (8.4%) uveitis, and scleritis (0.9%). Multiple anterior and posterior eye complications were observed, including cataract in the anterior eye (incidence rate, 0.18/eye-year) and epiretinal membrane in the posterior eye (incidence rate, 0.09/eye-year); incidence rates of reduction in best-corrected visual acuity to ≤20/50 and ≤20/200 were 0.10 and 0.06/eye-year, respectively. Rates of complications and visual acuity loss did not differ significantly between HIV- positive and negative individuals. In an era of re-emergence, syphilis has ocular complications that may compromise vision, despite treatment with appropriate anti-microbial drugs.


Subject(s)
Communicable Diseases, Emerging/complications , Eye Infections, Bacterial/epidemiology , Sepsis/microbiology , Syphilis/complications , Vision Disorders/epidemiology , Adult , Aged , Aged, 80 and over , Anti-Bacterial Agents/therapeutic use , Brazil/epidemiology , Communicable Diseases, Emerging/drug therapy , Communicable Diseases, Emerging/epidemiology , Communicable Diseases, Emerging/microbiology , Eye Infections, Bacterial/diagnosis , Eye Infections, Bacterial/drug therapy , Eye Infections, Bacterial/microbiology , Female , Humans , Incidence , Male , Middle Aged , Sepsis/epidemiology , Syphilis/drug therapy , Syphilis/epidemiology , Syphilis/microbiology , Treatment Outcome , Vision Disorders/diagnosis , Vision Disorders/microbiology , Vision Disorders/prevention & control , Visual Acuity , Young Adult
12.
IEEE Trans Biomed Eng ; 65(12): 2760-2768, 2018 12.
Article in English | MEDLINE | ID: mdl-29993430

ABSTRACT

OBJECTIVE: This work presents a new algorithm for the construction of a model for the Purkinje network (PN) of the heart. METHODS: The algorithm is based on a method called constructive constrained optimization (CCO), which was reformulated for the specific case of automatic PN generation. The proposed optimization-based algorithm is referred to as constructive optimization (CO). The CO method iteratively constructs the PN by minimizing the total length of the generated PN tree. In addition, it can take into account some important topological information of the PN, such as the location of the Purkinje-muscle junctions and the average bifurcation angle found in the literature. RESULTS: To validate the model, the new method was compared with the classical L-system method for generating PN models and to a recently proposed image-based technique. CONCLUSION: The results show that the CO is able to construct PNs with geometric features and activation times that are in good agreement with those reported in the literature and to those obtained by the other aforementioned alternatives.


Subject(s)
Image Processing, Computer-Assisted/methods , Models, Cardiovascular , Purkinje Cells/physiology , Algorithms , Animals , Computer Simulation , Dogs , Heart/diagnostic imaging , Signal Processing, Computer-Assisted
13.
Ocul Immunol Inflamm ; 26(7): 1059-1065, 2018.
Article in English | MEDLINE | ID: mdl-28481679

ABSTRACT

PURPOSE: Report of clinical/multimodal imaging outcomes of patients with syphilitic uveitis alternatively treated with intravenous(IV) ceftriaxone, due to unavailability of penicillin G. METHODS: Chart review of all cases of syphilitic uveitis presenting to Hospital São Geraldo/HC-UFMG and treated with intravenous ceftriaxone, between January and August 2014. Clinical, serological and ophthalmological data were collected. RESULTS: Twelve consecutive patients with syphilitic uveitis receiving IV ceftriaxone were identified. All 24 eyes had active intraocular inflammation on clinical examination. All patients received IV ceftriaxone (2-4 g daily) for 14-21 days, supplemented with oral corticosteroid as needed in 9 patients (75%), after documented clinical response. Improvement in intraocular inflammation was seen in all 24 eyes, with median best-corrected visual acuity (BCVA) increasing from 20/50 to 20/20, after a mean follow-up of 5.3 months. CONCLUSION: IV ceftriaxone may be an effective alternative for treatment of syphilitic uveitis, in the setting of unavailability of penicillin G.


Subject(s)
Anti-Bacterial Agents/administration & dosage , Ceftriaxone/administration & dosage , Chorioretinitis/drug therapy , Eye Infections, Bacterial/drug therapy , Syphilis/drug therapy , Uveitis, Posterior/drug therapy , Administration, Oral , Adult , Aged , Chorioretinitis/diagnosis , Chorioretinitis/physiopathology , Complementary Therapies , Eye Infections, Bacterial/diagnosis , Eye Infections, Bacterial/physiopathology , Fluorescein Angiography , Glucocorticoids/administration & dosage , Humans , Infusions, Intravenous , Male , Middle Aged , Multimodal Imaging , Retrospective Studies , Syphilis/diagnosis , Syphilis/physiopathology , Syphilis Serodiagnosis , Tomography, Optical Coherence , Uveitis, Posterior/diagnosis , Uveitis, Posterior/physiopathology , Visual Acuity/physiology
14.
Rev. ABENO ; 17(3): 110-118, 2017. tab
Article in Portuguese | BBO - Dentistry | ID: biblio-882859

ABSTRACT

A elaboração do diagnóstico correto e tratamento adequado é um dos maiores desafios que o cirurgião-dentista enfrenta na prática clínica. As radiografias são exames complementares neste processo, fornecendo informações importantes, e a radiografia panorâmica se destaca pela grande área examinada e pequena dose de radiação. O princípio da Justificação na Portaria SVS/MS nº 453/98 afirma que os exames devem apresentar um motivo para exposição do paciente à radiação X. Objetivou-se analisar as prescrições de exames radiográficos por acadêmicos de Odontologia, encaminhadas ao Setor de Radiologia Odontológica da Universidade Federal do Espírito Santo (UFES) quanto às informações fornecidas e à justificação da exposição. Tratou-se de um estudo observacional transversal baseado em dados secundários. Foram utilizadas todas as solicitações de exames recebidos e executados no setor de Radiologia da UFES, no período de janeiro de 2013 a dezembro de 2015. Foram analisadas 1251 solicitações de exames radiográficos sendo que 1174 eram referentes a exames panorâmicos. Constatou-se que a maior parte dos pacientes era do gênero feminino, 48,5% das solicitações não foram datadas, apenas 15,8% possuíam registro da suspeita clínica, sendo que dessas 58,68% traziam como justificativa "para fins de diagnóstico". Também foi observado que 92,1% estavam assinadas, 91,9% foram carimbadas, 53,2% das solicitações eram manuscritas e a disciplina que mais solicitou foi a Estomatologia. Em conclusão, ficou clara a necessidade de serem reforçados os conteúdos sobre a forma correta de se prescrever um exame complementar no curso de graduação (AU).


The development of a correct diagnosis and an effective treatment is one of the biggest challenges that the dentist must face on the clinic. The panoramic radiography is a complementary exam used on the stands out for the large area examined and a small radiation dose. The Justification principle on the Ordinance SVS/MS n° 453/98 states that the exams must have a reason to expose the patient to X-ray radiation. The objective of this study was to analyze the radiographic requests sent to the Radiology Division of Universidade Federal do Espírito Santo (UFES), searching for the information given by the requester, as well as the justification of the exposure. It was a transversal study based on secondary data. All requests for exams received and executed by the Radiology Department of UFES, between January 2013 and December 2015, were used. A total of 1251 requests were analyzed in which 1174 referred to panoramic exams. Most of the patients were female, 48.5% did not have a date, only 15,8% had a clinic indication and 58.68% of these brought as justification "for diagnosis". Also, were observed that 92,1% were singed and 91,9% stamped, 53.2% were handwritten and came mostly from the Stomalogy clinic. In conclusion, it was clear the need to reinforce the teachings about the correct way to request complementary exams in the undergraduate course (AU).


Subject(s)
Humans , Male , Female , Students, Dental , Teaching Materials , Diagnosis, Oral , Radiography, Dental/methods , Chi-Square Distribution , Data Interpretation, Statistical
15.
J Ophthalmic Inflamm Infect ; 6(1): 6, 2016 Dec.
Article in English | MEDLINE | ID: mdl-26920001

ABSTRACT

BACKGROUND: Syphilis is a reemerging sexually transmitted disease that can lead to any type of intraocular inflammation. Prognosis of syphilitic uveitis after appropriate therapy is classically regarded as favorable. However, visual threatening complications may develop, rarely including rhegmatogenous/tractional retinal detachment (R/T RD) and proliferative vitreoretinopathy. FINDINGS: We report 4 patients presenting with complex R/T RD and fulminant proliferative vitreoretinopathy despite treatment among 19 patients with syphilitic posterior uveitis consecutively seen at our uveitis service. Most of these complications occurred during or shortly after antibiotic therapy. All patients presented with significant intraocular inflammation, including vitritis, occlusive retinal vasculitis, and retinal infiltrates (necrotizing retinochoroiditis in six eyes of four patients). Two patients (50 %) tested HIV positive, and the same proportion had inadvertently received high dose oral ± intravenous corticosteroids prior to diagnosis of syphilis. Two patients (three eyes) underwent RD surgical repair. Histopathology of an excised epiretinal membrane disclosed fibroglial tissue, with immature glial cells and metaplastic retinal pigment epithelium, admixed with lymphoplasmacytic infiltrate. CONCLUSIONS: Syphilitic uveitis may be complicated by complex RD/fulminant fibroglial proliferation, occurring during/after treatment. Predisposing factors are currently unknown but may include prior use of corticosteroid, necrotizing retinitis and/or high spirochaetal load. A significant inflammatory component may underlie this fulminant fibroglial proliferation, being possibly amenable to modulation by aggressive anti-inflammatory therapy delivered concurrently with parenteral antibiotics.

16.
PLoS Pathog ; 9(4): e1003286, 2013.
Article in English | MEDLINE | ID: mdl-23592996

ABSTRACT

In most organisms, the heat-shock response involves increased heat-shock gene transcription. In Kinetoplastid protists, however, virtually all control of gene expression is post-transcriptional. Correspondingly, Trypanosoma brucei heat-shock protein 70 (HSP70) synthesis after heat shock depends on regulation of HSP70 mRNA turnover. We here show that the T. brucei CCCH zinc finger protein ZC3H11 is a post-transcriptional regulator of trypanosome chaperone mRNAs. ZC3H11 is essential in bloodstream-form trypanosomes and for recovery of insect-form trypanosomes from heat shock. ZC3H11 binds to mRNAs encoding heat-shock protein homologues, with clear specificity for the subset of trypanosome chaperones that is required for protein refolding. In procyclic forms, ZC3H11 was required for stabilisation of target chaperone-encoding mRNAs after heat shock, and the HSP70 mRNA was also decreased upon ZC3H11 depletion in bloodstream forms. Many mRNAs bound to ZC3H11 have a consensus AUU repeat motif in the 3'-untranslated region. ZC3H11 bound preferentially to AUU repeats in vitro, and ZC3H11 regulation of HSP70 mRNA in bloodstream forms depended on its AUU repeat region. Tethering of ZC3H11 to a reporter mRNA increased reporter expression, showing that it is capable of actively stabilizing an mRNA. These results show that expression of trypanosome heat-shock genes is controlled by a specific RNA-protein interaction. They also show that heat-shock-induced chaperone expression in procyclic trypanosome enhances parasite survival at elevated temperatures.


Subject(s)
HSP70 Heat-Shock Proteins , Heat-Shock Response/genetics , RNA-Binding Proteins/metabolism , Trypanosoma brucei brucei/metabolism , Zinc Fingers , Cell Line , Gene Expression Regulation , HSP70 Heat-Shock Proteins/genetics , HSP70 Heat-Shock Proteins/metabolism , Humans , Protein Binding , Protozoan Proteins/genetics , Protozoan Proteins/metabolism , RNA Interference , RNA Processing, Post-Transcriptional , RNA Splicing , RNA, Messenger/genetics , RNA, Messenger/metabolism , RNA, Protozoan/genetics , RNA, Protozoan/metabolism , RNA, Small Interfering , RNA-Binding Proteins/genetics , Sequence Alignment , Trypanosoma brucei brucei/genetics , Zinc Fingers/genetics
19.
Mol Microbiol ; 83(5): 1048-63, 2012 Mar.
Article in English | MEDLINE | ID: mdl-22296558

ABSTRACT

When Trypanosoma brucei differentiates from the bloodstream form to the procyclic form, there are decreases in the levels of many mRNAs encoding proteins required for the glycolytic pathway, and the mRNA encoding the RNA recognition motif protein RBP10 decreases in parallel. We show that RBP10 is a cytoplasmic protein that is specific to bloodstream-form trypanosomes, where it is essential. Depletion of RBP10 caused decreases in many bloodstream-form-specific mRNAs, with increases in mRNAs associated with the early stages of differentiation. The changes were similar to, but more extensive than, those caused by glucose deprivation. Conversely, forced RBP10 expression in procyclics induced a switch towards bloodstream-form mRNA expression patterns, with concomitant growth inhibition. Forced expression of RBP10 prevented differentiation of bloodstream forms in response to cis-aconitate, but did not prevent expression of key differentiation markers in response to glucose deprivation. RBP10 was not associated with heavy polysomes, showed no detectable in vivo binding to RNA, and was not stably associated with other proteins. Tethering of RBP10 to a reporter mRNA inhibited translation, and halved the abundance of the bound mRNA. We suggest that RBP10 may prevent the expression of regulatory proteins that are specific to the procyclic form.


Subject(s)
Protozoan Proteins/metabolism , RNA, Messenger/metabolism , RNA, Protozoan/metabolism , Transcriptome , Trypanosoma brucei brucei/genetics , Oligonucleotide Array Sequence Analysis , Protein Biosynthesis , Protozoan Proteins/genetics , RNA Interference , RNA, Messenger/genetics , RNA, Protozoan/genetics , Trypanosoma brucei brucei/growth & development , Trypanosoma brucei brucei/metabolism
20.
PLoS One ; 6(9): e25112, 2011.
Article in English | MEDLINE | ID: mdl-21957477

ABSTRACT

In many eukaryotes, messenger RNAs with premature termination codons are destroyed by a process called "nonsense-mediated decay", which requires the RNA helicase Upf1 and also, usually, an interacting factor, Upf2. Recognition of premature termination codons may rely on their distance from either a splice site or the polyadenylation site, and long 3'-untranslated regions can trigger mRNA decay. The protist Trypanosoma brucei relies heavily on mRNA degradation to determine mRNA levels, and 3'-untranslated regions play a major role in control of mRNA decay. We show here that trypanosomes have a homologue of Upf1, TbUPF1, which interacts with TbUPF2 and (in an RNA-dependent fashion) with poly(A) binding protein 1, PABP1. Introduction of a premature termination codon in either an endogenous gene or a reporter gene decreased mRNA abundance, as expected for nonsense-mediated decay, but a dependence of this effect on TbUPF1 could not be demonstrated, and depletion of TbUPF1 by over 95% had no effect on parasite growth or the mRNA transcriptome. Further investigations of the reporter mRNA revealed that increases in open reading frame length tended to increase mRNA abundance. In contrast, inhibition of translation, either using 5'-secondary structures or by lengthening the 5'-untranslated region, usually decreased reporter mRNA abundance. Meanwhile, changing the length of the 3'-untranslated region had no consistent effect on mRNA abundance. We suggest that in trypanosomes, translation per se may inhibit mRNA decay, and interactions with multiple RNA-binding proteins preclude degradation based on 3'-untranslated region length alone.


Subject(s)
Nonsense Mediated mRNA Decay , Trypanosoma brucei brucei/genetics , 3' Untranslated Regions/genetics , 5' Untranslated Regions/genetics , Animals , Codon, Nonsense/genetics , Genes, Reporter/genetics , Humans , Open Reading Frames/genetics , Poly(A)-Binding Proteins/metabolism , Protein Biosynthesis/genetics , Protein Structure, Tertiary , RNA Helicases/chemistry , RNA Helicases/genetics , RNA Helicases/metabolism , RNA Interference , Sequence Analysis , Transcription Factors/chemistry , Transcription Factors/deficiency , Transcription Factors/genetics , Transcription Factors/metabolism , Transcriptome/genetics , Trypanosoma brucei brucei/cytology , Trypanosoma brucei brucei/enzymology , Trypanosoma brucei brucei/growth & development
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