Enzyme catalysis of 1,2-amino shifts: the cooperative action of B6, B12, and aminomutases.

Ab initio molecular orbital theory is used to investigate 1,2-amino shifts catalyzed by aminomutases, coenzyme B12, and vitamin B6 (in the form of pyridoxal 5'-phosphate or PLP). Our calculations suggest essential catalytic roles for each of B12, B6, and the enzyme in aminomutase-catalyzed reactions. In the first place, coenzyme B12 provides a source of abstracting radicals, allowing the rearrangement reaction to take place on the radical surface. The involvement of radicals is supported by comparison of experimental and theoretical electron paramagnetic resonance parameters. Next, B6 allows the enzyme to lower the barrier height by introducing a double bond (allowing a low-energy intramolecular rearrangement pathway) and by providing a suitable site for partial protonation (preventing overstabilization of the reaction intermediate which could lead to enzyme inactivation). The PLP hydroxyl group is also identified as an important participant in these reactions. Finally, the enzyme holds the various reaction components in place and is the source of acidic functional groups that can provide partial protonation.

Interconversion of (S)-glutamate and (2S,3S)-3-methylaspartate: a distinctive B(12)-dependent carbon-skeleton rearrangement.

The interconversion of (S)-glutamate and (2S,3S)-3-methylaspartate catalyzed by B(12)-dependent glutamate mutase is discussed using results from high-level ab initio molecular orbital calculations. Evidence is presented regarding the possible role of coenzyme-B(12) in substrate activation and product formation via radical generation. Calculated electron paramagnetic resonance parameters support experimental evidence for the involvement of substrate-derived radicals and will hopefully aid the future detection of other important radical intermediates. The height of the rearrangement barrier for a fragmentation-recombination pathway, calculated with a model that includes neutral amino and carboxylic acid substituents in the migrating glycyl group, supports recent experimental evidence for the interconversion of (S)-glutamate and (2S,3S)-3-methylaspartate through such a pathway. Our calculations suggest that the enzyme may facilitate the rearrangement of (S)-glutamate through (partial) proton-transfer processes that control the protonation state of substituents in the migrating group.

Understanding the mechanism of B(12)-dependent diol dehydratase: a synergistic retro-push--pull proposal.

Ab initio molecular orbital theory is used to investigate the coenzyme B(12)-dependent reactions catalyzed by diol dehydratase. The key step in such reactions is believed to be a 1,2-hydroxyl migration, which occurs within free-radical intermediates. The barrier for this migration, if unassisted, is calculated to be too high to be consistent with the observed reaction rate. However, we find that "pushing" the migrating hydroxyl, through interaction with a suitable acid, is able to provide significant catalysis. This is denoted retro-push catalysis, the retro prefix signifying that the motion of the migrating group is in the direction opposite to the electron motion. Similarly, the "pulling" of the migrating group, through interaction of the spectator hydroxyl with an appropriate base, is found to substantially reduce the rearrangement barrier. Importantly, the combination of these two effects results in a barrier reduction that is notably greater than additive. This synergistic interplay of the push and the pull provides an attractive means of catalysis. Our proposed retro-push--pull mechanism leads to results that are consistent with isotope-labeling experiments, with experimental rate data, and with the crystal structure of the enzyme.

Singlet-triplet splittings and barriers to Wolff rearrangement for carbonyl carbenes.

High-level ab initio calculations at the G3(MP2)//B3-LYP level have been used to study carbomethoxychlorocarbene and related halogenocarbenes and carbonyl carbenes. Initial calculations at the more accurate W1' level on the subset CH(2), HCCl, HCF, CCl(2), and CF(2) provide support for the reliability of G3(MP2)//B3-LYP for this type of problem. The W1' calculations also suggest that the experimental S-T splitting is slightly underestimated for HCCl and CF(2) and substantially underestimated for CCl(2), in keeping with other recent high-level studies. Whereas the parent carbonyl carbenes, namely formylcarbene, carbohydroxycarbene, and carbomethoxycarbene, are all predicted to have triplet ground states, their chloro and fluoro derivatives are predicted to have singlet ground states. In particular, carbomethoxychlorocarbene is predicted to have a singlet ground state, with the singlet-triplet splitting estimated as -16.0 kJ mol(-)(1). The barriers to Wolff rearrangement of the singlet carbonyl carbenes generally (but not always) correlate with the exothermicity accompanying the production of ketenes. In the case of the parent carbonyl carbenes, for which the rearrangement reaction is most exothermic, the barriers lie between about 10 and 30 kJ mol(-)(1), whereas for the less exothermic rearrangements of the chloro- and fluoro-substituted carbonyl carbenes, the Wolff rearrangement barriers increase significantly to between 58 and 75 kJ mol(-)(1). The calculated barrier for carbomethoxychlorocarbene is 58.2 kJ mol(-)(1).

A G2 study of SH+ exchange reactions involving lone-pair donors and unsaturated hydrocarbons.

The ligand exchange reactions between mono-adducts of the sulfenium ion ([SH-X]-) and either unsaturated hydrocarbons or lone-pair donors have been investigated computationally at the G2 level. The mono-adducts react with acetylene or ethylene to form a thiiranium or a thiirenium ion, in most cases without an overall barrier. In the reactions involving lone-pair donors, the original lone-pair donor is expelled from the [SH-X]- mono-adduct with the formation of a new mono-adduct. The reaction proceeds in this case via an intermediate di-adduct. Both the hydrocarbon and the lone-pair donor attack the mono-adduct with the relevant orbitals aligned in a near-collinear fashion, as was also the case for previously investigated reactions involving PH2+ and Cl+. The reaction energies and the binding energies of the intermediate complexes in the exchange reactions are primarily determined by the electronegativities of the lone-pair donors. The thermochemical data can be rationalized within the framework of qualitative molecular orbital theory, and the results are compared with our previous findings for the corresponding reactions involving PH2+ and Cl+.

Hemispiroalkaplanes: hydrocarbon cage systems with a pyramidal-tetracoordinate carbon atom and remarkable basicity

A new class of saturated hydrocarbons, in which a spiropentane-type unit is bound by a cyclic hydrocarbon, has been investigated by using ab initio molecular orbital calculations at the B3-LYP and MP2 levels. These molecules have been given the trivial name hemispiroalkaplanes. Hemialkaplanes, which are analogous molecules built-up from a neopentane-type unit and a cyclic hydrocarbon, have also been examined. The hemispiroalkaplanes are predicted to contain a pyramidal-tetracoordinate carbon atom that possesses a lone pair of electrons. Protonation at this apical carbon atom is found to be highly favourable, resulting in a remarkably high basicity for a saturated hydrocarbon. The proton affinities of the hemispiroalkaplanes are calculated to be more than 1170 kJmol(-1), even greater than that of the diamine "proton sponges". Structural parameters, heats of formation and strain energies for the novel hydrocarbons are detailed.

Planar-Tetracoordinate Carbon in a Neutral Saturated Hydrocarbon: Theoretical Design and Characterization.

Exact planarity at the central carbon atom is achieved, according to molecular orbital calculations, in the strained polycyclic cage hydrocarbon dimethanospiro[2.2]octaplane (see structure). There are no glaringly long C-C bonds, which might have reflected inherent instability in this molecule that is yet to be synthesized.