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1.
Int J Radiat Biol ; : 1-10, 2024 May 29.
Article in English | MEDLINE | ID: mdl-38810111

ABSTRACT

PURPOSE: This interlaboratory comparison was conducted to evaluate the performance of the Latin-American Biodosimetry Network (LBDNet) in analyzing digitized images for scoring dicentric chromosomes from in vitro irradiated blood samples. The exercise also assessed the use of weighted robust algorithms to compensate the uneven expertise among the participating laboratories. METHODS: Three sets of coded images obtained through the dicentric chromosome assay from blood samples irradiated at 1.5 Gy (sample A) and 4 Gy (sample B), as well as a non-irradiated whole blood sample (sample C), were shared among LBDNet laboratories. The images were captured using the Metafer4 platform coupled with the AutoCapt module. The laboratories were requested to perform triage scoring, conventional scoring, and dose estimation. The dose estimation was carried out using either their laboratory calibration curve or a common calibration curve. A comparative statistical analysis was conducted using a weighted robust Hampel algorithm and z score to compensate for uneven expertise in dicentric analysis and dose assessment among all laboratories. RESULTS: Out of twelve laboratories, one had unsatisfactory estimated doses at 0 Gy, and two had unsatisfactory estimated doses at 1.5 Gy when using their own calibration curve and triage scoring mode. However, all doses were satisfactory at 4 Gy. Six laboratories had estimated doses within 95% uncertainty limits at 0 Gy, seven at 1.5 Gy, and four at 4 Gy. While the mean dose for sample C was significantly biased using robust algorithms, applying weights to compensate for the laboratory's analysis expertise reduced the bias by half. The bias from delivered doses was only notable for sample C. Using the common calibration curve for dose estimation reduced the standard deviation (s*) estimated by robust methods for all three samples. CONCLUSIONS: The results underscore the significance of performing interlaboratory comparison exercises that involve digitized and electronically transmitted images, even when analyzing non-irradiated samples. In situations where the participating laboratories possess different levels of proficiency, it may prove essential to employ weighted robust algorithms to achieve precise outcomes.

2.
Trends Hear ; 28: 23312165241235463, 2024.
Article in English | MEDLINE | ID: mdl-38425297

ABSTRACT

Sound localization testing is key for comprehensive hearing evaluations, particularly in cases of suspected auditory processing disorders. However, sound localization is not commonly assessed in clinical practice, likely due to the complexity and size of conventional measurement systems, which require semicircular loudspeaker arrays in large and acoustically treated rooms. To address this issue, we investigated the feasibility of testing sound localization in virtual reality (VR). Previous research has shown that virtualization can lead to an increase in localization blur. To measure these effects, we conducted a study with a group of normal-hearing adults, comparing sound localization performance in different augmented reality and VR scenarios. We started with a conventional loudspeaker-based measurement setup and gradually moved to a virtual audiovisual environment, testing sound localization in each scenario using a within-participant design. The loudspeaker-based experiment yielded results comparable to those reported in the literature, and the results of the virtual localization test provided new insights into localization performance in state-of-the-art VR environments. By comparing localization performance between the loudspeaker-based and virtual conditions, we were able to estimate the increase in localization blur induced by virtualization relative to a conventional test setup. Notably, our study provides the first proxy normative cutoff values for sound localization testing in VR. As an outlook, we discuss the potential of a VR-based sound localization test as a suitable, accessible, and portable alternative to conventional setups and how it could serve as a time- and resource-saving prescreening tool to avoid unnecessarily extensive and complex laboratory testing.


Subject(s)
Auditory Perceptual Disorders , Sound Localization , Virtual Reality , Adult , Humans , Hearing Tests
3.
J Am Assoc Lab Anim Sci ; 62(6): 494-501, 2023 Nov 11.
Article in English | MEDLINE | ID: mdl-37973152

ABSTRACT

Hormonal contraception is an effective, reversible tool for managing birth rates in humans and nonhuman animals alike. However, manipulating reproductive hormones has behavioral consequences that can impact social and sexual behavior between conspecifics. First, we studied 18 pairs of nonreproductive titi monkeys (Plecturocebus cupreus) to test the efficacy of a novel method of hormonal contraception (deslorelin acetate implants) on reproductive hormone cycling in females and found significant reductions in urinary estrogens and progestagens among treated females compared to untreated controls. We then studied 35 nonreproductive pairs of coppery titi monkeys (Plecturocebus cupreus) to ascertain whether treating females with one of 2 different forms of hormonal contraception (deslorelin acetate implants (n = 17) or medroxyprogesterone acetate injections (n = 9)) would influence the relationship between pair mates compared to the relationship between untreated females and their vasectomized male mates (n = 9). Over a 5-month period, we found no differences in affiliative behaviors between pairs containing untreated females compared to pairs in which the female was treated with either deslorelin acetate or medroxyprogesterone acetate. Similarly, we found no differences in affiliation between pairs in the 2 treatment groups. This study is the first to examine behavioral consequences of hormonal contraception in a pair-bonding species. The results are encouraging for captive, managed breeding colonies of such social animals, especially those used in behavioral research.


Subject(s)
Callicebus , Contraceptive Agents , Humans , Male , Female , Animals , Medroxyprogesterone Acetate , Social Behavior
4.
Nutrients ; 15(8)2023 Apr 10.
Article in English | MEDLINE | ID: mdl-37111040

ABSTRACT

Amyotrophic lateral sclerosis (ALS) is a progressive disease of neuronal degeneration in the motor cortex, brainstem, and spinal cord, resulting in impaired motor function and premature demise as a result of insufficient respiratory drive. ALS is associated with dysfunctions in neurons, neuroglia, muscle cells, energy metabolism, and glutamate balance. Currently, there is not a widely accepted, effective treatment for this condition. Prior work from our lab has demonstrated the efficacy of supplemental nutrition with the Deanna Protocol (DP). In the present study, we tested the effects of three different treatments in a mouse model of ALS. These treatments were the DP alone, a glutamate scavenging protocol (GSP) alone, and a combination of the two treatments. Outcome measures included body weight, food intake, behavioral assessments, neurological score, and lifespan. Compared to the control group, DP had a significantly slower decline in neurological score, strength, endurance, and coordination, with a trend toward increased lifespan despite a greater loss of weight. GSP had a significantly slower decline in neurological score, strength, endurance, and coordination, with a trend toward increased lifespan. DP+GSP had a significantly slower decline in neurological score with a trend toward increased lifespan, despite a greater loss of weight. While each of the treatment groups fared better than the control group, the combination of the DP+GSP was not better than either of the individual treatments. We conclude that the beneficial effects of the DP and the GSP in this ALS mouse model are distinct, and appear to offer no additional benefit when combined.


Subject(s)
Amyotrophic Lateral Sclerosis , Mice , Animals , Amyotrophic Lateral Sclerosis/metabolism , Superoxide Dismutase-1/metabolism , Glutamic Acid/metabolism , Mice, Transgenic , Disease Models, Animal , Superoxide Dismutase/metabolism
5.
Infect Ecol Epidemiol ; 13(1): 2277000, 2023.
Article in English | MEDLINE | ID: mdl-38187166

ABSTRACT

Introduction: The use of steroids has been proposed as a pharmacological approach to treat the SARS-CoV-2 infection to improve outcomes. However, there are doubts about safety against the development of superinfections and their worse outcomes. Objective: To establish the relative frequency of superinfection associated with using steroids in patients with SARS-CoV-2 infection. Materials and methods: We conducted a systematic literature review and meta-analysis using PRISMA standards in 5 databases (PubMed/Scopus/Cochrane/EMBASE/Google Scholar). The search was carried out between February 2020 and May 2023. The search terms were 'steroids' or 'superinfection' 'and' followed by 'SARS-CoV-2' or 'COVID-19'. Results: We found 77 studies, but only 10 with 3539 patients were included in the systematic review. All patients developed severe disease. The documented OR for superinfection through the meta-analysis was 1.437 (95% IC 0.869-2.378) with a p-value of 0.158 without showing a risk attributed to steroids and the development of superinfections. In the Funnel-plot analysis, no publication biases were found. Conclusion: No relationship was found between using steroids and superinfection in patients with SARS-CoV-2.

6.
Poblac. salud mesoam ; 20(1)dic. 2022.
Article in Spanish | LILACS-Express | LILACS | ID: biblio-1448839

ABSTRACT

Introducción: las radiaciones ionizantes (RI) pueden inducir la formación de micronúcleos (MN). La frecuencia de MN se utiliza como biomarcador de daño genético inducido por (RI). Objetivo: evaluar el daño al ADN resultante de la exposición ocupacional a RI en personal de clínicas veterinarias o afines. Metodología: se utilizó el ensayo de micronúcleos con bloqueo de la citocinesis (MNBC) para comparar la frecuencia observada del biomarcador en 40 individuos expuestos ocupacionalmente a RI con respecto a un grupo control de 32 participantes, ambos grupos pertenecen a personal veterinario. Además, se registraron variables demográficas, de estilo de vida y ocupacionales que pudieran influir en la formación de MN. Resultados: el análisis univariado no registró diferencias significativas en la frecuencia de MN entre los grupos de estudio (p=0,118). Mediante análisis multivariado se obtuvo que aproximadamente un 27% (R2 ajustado= 0,269) de la variabilidad de la frecuencia de MN puede explicarse por la influencia conjunta de la edad, el sexo y el número de radiografías realizadas por el individuo. La edad es la variable de mayor importancia relativa (β = 0,504), seguida del sexo del participante (β = -0,316) y el número de radiografías realizadas por día (β = 0,214). Conclusiones: La frecuencia de MN tiende a aumentar en mujeres, a medida que aumenta la edad del participante y a mayor número de radiografías realizadas.


Introduction: Ionizing radiation (RI) can induce the formation of micronuclei (MN). The formation of MN is used as a biomarker of radiation-induced genetic damage. Objective: assess DNA damage resulting from occupational exposure to RI in veterinary personnel. Methodology: the cytokinesis-block micronucleus assay (MNBC) was used to compare the observed frequency of MN in 40 individuals occupationally exposed to ionizing radiation with respect to a control group of 32 participants, both groups belonging to veterinary personnel. In addition, demographic, lifestyle and occupational variables that could influence the formation of MN were recorded. Results: univariate analysis did not show significant differences in the frequency of MN between the study groups (p=0.118). Using multivariate analysis, it was found that approximately 27% (adjusted R2= 0.269) of the variability in the frequency of MN can be explained by the joint influence of age, sex and the number of radiographic images performed by the participant. Age is the variable with the greatest relative importance (β = 0.504), followed by the sex of the participant (β = -0.316) and the number of X-rays performed per day (β = 0.214). Conclusions: the frequency of MN tends to increase in women, as the participant's age increases and as the number of radiographic images performed increases.

7.
Front Microbiol ; 13: 966282, 2022.
Article in English | MEDLINE | ID: mdl-36090062

ABSTRACT

Ensuring the public has a fundamental understanding of human-microbe interactions, immune responses, and vaccines is a critical challenge in the midst of a pandemic. These topics are commonly taught in undergraduate- and graduate-level microbiology and immunology courses; however, creating engaging methods of teaching these complex concepts to students of all ages is necessary to keep younger students interested when science seems hard. Building on the Tactile Teaching Tools with Guided Inquiry Learning (TTT-GIL) method we used to create an interactive lac operon molecular puzzle, we report here two TTT-GIL activities designed to engage diverse learners from middle schoolers to masters students in exploring molecular interactions within the immune system. By pairing physical models with structured activities built on the constructivist framework of Process-Oriented Guided Inquiry Learning (POGIL), TTT-GIL activities guide learners through their interaction with the model, using the Learning Cycle to facilitate construction of new concepts. Moreover, TTT-GIL activities are designed utilizing Universal Design for Learning (UDL) principles to include all learners through multiple means of engagement, representation, and action. The TTT-GIL activities reported here include a web-enhanced activity designed to teach concepts related to antibody-epitope binding and specificity to deaf and hard-of-hearing middle and high school students in a remote setting and a team-based activity that simulates the evolution of the Major Histocompatibility Complex (MHC) haplotype of a population exposed to pathogens. These activities incorporate TTT-GIL to engage learners in the exploration of fundamental immunology concepts and can be adapted for use with learners of different levels and educational backgrounds.

8.
Poblac. salud mesoam ; 19(2)jun. 2022.
Article in Spanish | LILACS, SaludCR | ID: biblio-1386939

ABSTRACT

Resumen La prevalencia mundial de la discapacidad intelectual (DI) es del 3 %. Una de las causas más comunes de DI de origen genético son las aberraciones cromosómicas, las cuales resultan fácilmente detectables mediante un cariotipo. Sin embargo, muchas de estas pasan desapercibidas durante el análisis citogenético convencional debido a su tamaño. Estas pequeñas alteraciones se pueden localizar en los subtelómeros y se ha observado que, cuando es así, constituyen una razón importante de DI en pacientes que carecen de un diagnóstico de causalidad. En este estudio de tipo observacional, se utilizó la técnica MLPA con el objetivo de determinar la frecuencia de aberraciones cromosómicas submicroscópicas en los subtelómeros en una población infantil con DI de origen desconocido. Se examinaron 70 muestras de forma exitosa y se obtuvo un caso con una microduplicación en el subtelómero 17p, para una frecuencia del 1,4 %. También, se realizó el análisis citogenético en 33 muestras y se encontró un caso con una aberración cromosómica detectable al microscopio, para una frecuencia del 3 %. El porcentaje de aberraciones cromosómicas subteloméricas fue menor al esperado en comparación con estudios similares. Finalmente, se concluyó que el cariotipo y la técnica MLPA se complementan para el abordaje de personas con DI de origen desconocido.


Abstract The prevalence of intellectual disability (ID) in the global population is 3%. One of the most frequent cause of ID are chromosome aberrations, which are easily detected by a karyotype. However, many of these maygoundetected during a conventional cytogenetic analysis because of their length.These small alterations can be localized in the subtelomeres and it has been observed that when localized there, they are an important cause of ID in patients without a causality diagnostic. In this observational study, we use the MLPA technique for the purpose of identifying the frequency of submicroscopicsubtelomere chromosomal aberrations in a population of people with ID of unknown origin. 70 samples were successfully analyzed with MLPA and we found one case with a microduplication in the 17p subtelomere for a frequency of 1,4%. Also,the karyotype was performed in 33cases, and we foundone case with a chromosome aberration that can be detect by microscope for a frequency of 3%. The subtelomeric chromosome aberration frequency was lower than expected as we compare our results with similar studies. Finally, with this work we conclude that the karyotype and the MLPA technique complement each other for approaching people with ID of unknown origin.


Subject(s)
Humans , Male , Female , Chromosome Aberrations , Intellectual Disability , Costa Rica
9.
Poblac. salud mesoam ; 19(2)jun. 2022.
Article in Spanish | LILACS, SaludCR | ID: biblio-1386957

ABSTRACT

Resumen Introducción: el laboratorio de citogenética del Instituto de Investigaciones en Salud (INISA) de la Universidad de Costa Rica estableció un Servicio de Dosimetría Biológica en enero del 2020 utilizando biomarcadores citogenéticos de exposición a radiaciones ionizantes. Es el primero de su tipo en la región centroamericana. Objetivo: establecer un servicio de dosimetría biológica para Costa Rica, elaborando una curva de calibración dosis-efecto para rayos gamma. Metodología: para la realización de la curva de calibración se irradiaron muestras de sangre periférica in vitro con rayos gamma de dos voluntarios, uno femenino y otro masculino, en 11 puntos de dosis en el rango de 0 a 5 Gy. Se cultivó la sangre acorde a los protocolos internacionales durante 48 horas y se registraron las aberraciones inducidas. Los programas Dose Estimate V5.2 y R versión 4.03 se utilizaron para el cálculo de los coeficientes de la curva de calibración que correlaciona la frecuencia de cromosomas dicéntricos con la dosis. Resultados: los coeficientes de la curva son α: 0.02737±0.00658, ß: 0,05938±0,00450 y C: 0.00129±0.00084. Estos coeficientes tienen valores similares a los reportados internacionalmente. La curva se validó calculando dos dosis incógnitas, en la primera incógnita la dosis suministrada fue de 1,5 Gy y la dosis estimada fue 1,47 Gy y en la segunda la dosis suministrada fue de 4 Gy y la dosis estimada fue 3,616 Gy, para ambos casos no existen diferencias estadísticamente significativas entre las dosis suministradas y las estimadas. Conclusiones: actualmente El Servicio de Dosimetría Biológica del INISA puede estimar dosis absorbida en personas que se sospecha de una sobre exposición a rayos gamma en personal ocupacionalmente expuesto o personas involucradas en un accidente radiológico.


Abstract Introduction. The cytogenetics laboratory of the Health Research Institute (INISA) of the University of Costa Rica established a Biological Dosimetry Service in January 2020 using cytogenetic biomarkers of exposure to ionizing radiation. It is the first of its kind in the Central American region. Objective: establish a biological dosimetry service for Costa Rica, developing a dose-effect calibration curve for gamma rays. Methodology: to carry out the calibration curve, peripheral blood samples from two volunteers, one female and the other male, were irradiated in vitro with gamma rays, at 11 dose points in the range of 0 to 5 Gy. Blood was cultured according to international protocols for 48 hours and induced aberrations were recorded. The Dose Estimate V5.2 and R version 4.03 programs were used to calculate the coefficients of the calibration curve that correlates the frequency of dicentric chromosomes with the dose. Results: the coefficients of the curve are α: 0.02737 ± 0.00658, ß: 0.05938 ± 0.00450 and C: 0.00129 ± 0.00084. These coefficients have values similar to those reported internationally. The curve was validated by calculating two unknown doses, in the first unknown case the delivered dose was 1.5 Gy and the estimated dose was 1.47 Gy and in the second case the delivered dose was 4 Gy and the estimated dose was 3.616 Gy. for both cases there are no statistically significant differences between the delivered and estimated doses. Conclusions: the Biological Dosimetry Service of the INISA can estimate absorbed dose in persons suspected of overexposure to gamma rays in occupationally exposed personnel or persons involved in a radiological accident.Health is loaded with symbolisms and practical manifestations that differ according to social groups and sociocultural contexts. In order to make everyday life and needs visible, the Theoretical Paradigm of Social Representations provides the theoretical-methodological bases necessary to understand the common sense knowledge associated with health among the Nicaraguan migrant population in Costa Rica. Methodology: Qualitative study with ethnographic approach that aimed to identify the social representation of health, through the process of objectification, present among Nicaraguan migrants living in Costa Rica. Data collected through semi-structured interviews, participant observation, and field diaries. Processing according to Content Analysis. Results: The social representation of health found behaves analogously to a formula; where, the search for peaceful environments is added to the achievement of financial stability to result in two interdependent representations: 1) Health as physical-mental strength; and 2) Health as a future and abstract sensation of well-being, happiness and transcendence. The socio-political antecedents in Nicaragua, the migratory process, and the adaptation to Costa Rica play a preponderant role in shaping the representation on health. Conclusion: Social representations about health have direct practical implications on the ways of life and needs of migrant groups. Understanding their common sense knowledge allows to move towards more contextualized public policies. More integration of the thoughts, opinions and feelings of migrants in decision-making platforms is recommended.


Subject(s)
Humans , Male , Female , Radiation, Ionizing , Dosimetry , Costa Rica , Gamma Rays
10.
J Org Chem ; 87(5): 3613-3622, 2022 03 04.
Article in English | MEDLINE | ID: mdl-35076243

ABSTRACT

Thermal (2 + 2) cycloadditions of several N-carboalkoxy (R)-2-tert-butyldihydrooxazoles with ketenes have been studied experimentally by the Ghosez group. Contrary to results from Seebach and co-workers that the electrophilic addition of acylating agents occurs ß to dihydrooxazole nitrogen, Ghosez found major cycloadducts resulting from an attack of ketene carbonyl carbon ß to oxygen. We investigate the potential energy surface for the cycloaddition of diphenyl- and phenylchloroketenes to two (R)-2-tert-butyldihydrooxazoles with ωB97X-D and mPW1PW91 density functional theory and DLPNO-CCSD(T) wave function theory. These (2 + 2) cycloadditions are concerted but highly asynchronous, and the selectivity trends in ketene addition cases are in good agreement with the experiment. We propose a model based on the buildup of charge in oxazoline to reconcile the regiochemical differences between Ghosez and Seebach's observations.


Subject(s)
Cycloaddition Reaction , Humans , Indicators and Reagents , Stereoisomerism
11.
J Org Chem ; 86(24): 17955-17964, 2021 Dec 17.
Article in English | MEDLINE | ID: mdl-34846894

ABSTRACT

We report a computational investigation of two reaction cascades occurring following the Claisen rearrangements of aryl propargyl ethers to the alternate ortho positions in unsymmetrical reactants. Our computations explain how substituents influence reactivity and regioselectivity. Rearrangement to the substituted ortho carbon leads to a tricyclo[3.2.1.0]octane core, while rearrangement to an unsubstituted ortho carbon leads to a benzopyran. Density functional theory with ωB97X-D indicates that these reactions involve rate-determining Claisen rearrangements followed by subsequent reaction cascades of the Claisen rearrangement products depending on the presence or absence of a substituent at the ortho carbon.

13.
Molecules ; 26(20)2021 Oct 09.
Article in English | MEDLINE | ID: mdl-34684680

ABSTRACT

A series of fourteen 2-aryl-3-phenyl-2,3-dihydro-4H-pyrido[3,2-e][1,3]thiazin-4-ones was prepared at room temperature by T3P-mediated cyclization of N-phenyl-C-aryl imines with thionicotinic acid, two difficult substrates. The reactions were operationally simple, did not require specialized equipment or anhydrous solvents, could be performed as either two or three component reactions, and gave moderate-good yields as high as 63%. This provides ready access to N-phenyl compounds in this family, which have been generally difficult to prepare. As part of the study, the first crystal structure of neutral thionicotinic acid is also reported, and showed the molecule to be in the form of the thione tautomer. Additionally, the synthesized compounds were tested against T. brucei, the causative agent of Human African Sleeping Sickness. Screening at 50 µM concentration showed that five of the compounds strongly inhibited growth and killed parasites.


Subject(s)
Thiazines , Trypanosoma brucei brucei/drug effects , Anhydrides/chemistry , Animals , Antiprotozoal Agents/chemical synthesis , Antiprotozoal Agents/pharmacology , Organophosphonates/chemistry , Thiazines/chemical synthesis , Thiazines/pharmacology
14.
Alerta (San Salvador) ; 4(3): 150-143, jul. 29, 2021.
Article in Spanish | BISSAL, LILACS | ID: biblio-1282991

ABSTRACT

La enfermedad de Parkinson es la segunda patología neurodegenerativa más recurrente, progresiva y crónica que perjudica a pacientes y cuidadores. Es fundamental describir la calidad de vida en pacientes y cuidadores posterior a la terapia de rehabilitación cognitiva. Por ello se elaboró un artículo de revisión mediante una búsqueda en bases de datos, PubMed, Google Scholar, SciELO, empleando artículos originales, ensayos clínicos, de revisión, entre otros, publicados en los últimos cinco años en español e inglés. El deterioro cognitivo en los pacientes de forma prematura conlleva a mayor riesgo de demencia, que se manifiesta con repercusión en las actividades de la vida diaria, como en la calidad de vida pacientecuidador. Mientras más avanzado se encuentre el estadio de la enfermedad, los pacientes con deterioro cognitivo generan mayor dependencia de sus cuidadores, empeorando la calidad de vida de ambos. La terapia de rehabilitación cognitiva pretende mejorar la calidad de vida de pacientes con enfermedad de Parkinson y sus cuidadores; actualmente se describen terapias de rehabilitación cognitiva basada en ejercicio físico. Al fortalecer la cognición mediante terapias de rehabilitación basadas en actividad física, el paciente presenta mayor independencia, lo cual disminuye la carga del cuidador, generando mayor empatía entre ambos


Parkinson's disease is the second most recurrent, progressive and chronic neurodegenerative pathology that harms patients and caregivers. It is essential to describe the quality of life in patients and caregivers after cognitive rehabilitation therapy. For this reason, a review article was prepared through a search in databases, PubMed, Google Scholar, SciELO, using original articles, clinical trials, review, among others, published in the last five years in Spanish and English. Cognitive deterioration in patients prematurely leads to an increased risk of dementia, which manifests itself with repercussions on activities of daily living, as well as on the quality of life of the patient-caregiver. The more advanced the stage of the disease is, the patients with cognitive impairment generate greater dependence on their caregivers, worsening the quality of life for both. Cognitive rehabilitation therapy aims to improve the quality of life of patients with Parkinson's disease and their caregivers; Cognitive rehabilitation therapies based on physical exercise are currently being described. By strengthening cognition through rehabilitation therapies based on physical activity, the patient has greater independence, which reduces the burden on the caregiver, generating greater empathy between both


Subject(s)
Humans , Parkinson Disease , Patients , Quality of Life , Caregivers , Cognition
15.
Angew Chem Int Ed Engl ; 60(33): 18201-18208, 2021 Aug 09.
Article in English | MEDLINE | ID: mdl-34080279

ABSTRACT

We report a computational and experimental study of the reaction of oxadiazinones and strained alkynes to give polycyclic aromatic hydrocarbons (PAHs). The reaction proceeds by way of a pericyclic reaction cascade and leads to the formation of four new carbon-carbon bonds. Using M06-2X DFT calculations, we interrogate several mechanistic aspects of the reaction, such as why the use of non-aromatic strained alkynes can be used to access unsymmetrical PAHs, whereas the use of arynes in the methodology leads to symmetrical PAHs. In addition, experimental studies enable the rapid synthesis of new PAHs, including tetracene and pentacene scaffolds. These studies not only provide fundamental insight regarding the aforementioned cycloaddition cascades and synthetic access to PAH scaffolds, but are also expected to enable the synthesis of new materials.

16.
Angew Chem Int Ed Engl ; 60(27): 14989-14997, 2021 06 25.
Article in English | MEDLINE | ID: mdl-33851504

ABSTRACT

Strained cyclic allenes, first discovered in 1966 by Wittig and co-workers, have recently emerged as valuable synthetic building blocks. Previous experimental investigations, and computations reported here, demonstrate that the Diels-Alder reactions of furans and pyrroles with 1,2-cyclohexadiene and oxa- and azaheterocyclic analogs proceed with endo selectivity. This endo selectivity gives the adduct with the allylic saturated carbon of the cyclic allene endo to the diene carbons. The selectivity is very general and useful in synthetic applications. Our computational study establishes the origins of this endo selectivity. We analyze the helical frontier molecular orbitals of strained cyclic allenes and show how secondary orbital and electrostatic effects influence stereoselectivity. The LUMO of carbon-3 of the allene (C-3 is not involved in primary orbital interactions) interacts in a stabilizing fashion with the HOMO of the diene in such a way that the carbon of the cyclic allene attached to C-1 favors the endo position in the transition state. The furan LUMO, allene HOMO interaction reinforces this preference. These mechanistic studies are expected to prompt the further use of long-avoided strained cyclic allenes in chemical synthesis.


Subject(s)
Cyclohexenes/chemical synthesis , Cycloaddition Reaction , Cyclohexenes/chemistry , Molecular Structure , Stereoisomerism
17.
Sci Adv ; 7(4)2021 Jan.
Article in English | MEDLINE | ID: mdl-33523936

ABSTRACT

Precise time trajectories and detailed reaction pathways of the Diels-Alder reaction were directly observed using accurate single-molecule detection on an in situ label-free single-molecule electrical detection platform. This study demonstrates the well-accepted concerted mechanism and clarifies the role of charge transfer complexes with endo or exo configurations on the reaction path. An unprecedented stepwise pathway was verified at high temperatures in a high-voltage electric field. Experiments and theoretical results revealed an electric field-catalyzed mechanism that shows the presence of a zwitterionic intermediate with one bond formation and variation of concerted and stepwise reactions by the strength of the electric field, thus establishing a previously unidentified approach for mechanistic control by electric field catalysis.

18.
Article in English | MEDLINE | ID: mdl-32313589

ABSTRACT

Access to 3D printing and other "maker" technologies has opened new doors for the creation of classroom activities using physical models. Multiple strategies for implementing 3D-printed models exist, and work to define best practices is ongoing. We outline the strengths and weaknesses of common strategies for employing physical models in undergraduate biology courses and describe a novel strategy that we have developed to pair 3D-printed models with guided inquiry learning to create inclusive and interactive learning experiences. We further introduce the STEM BUILD website, a resource that we have developed to facilitate collaboration among instructors, makers, researchers, and Universal Design for Learning experts and reduce barriers to broad implementation of inclusive kinesthetic learning activities.

19.
Article in English | MEDLINE | ID: mdl-32341727

ABSTRACT

Undergraduate biology courses rely heavily on visual representation of information. Students view images of plants, animals, and microbes, interpret data presented in graphs, and use drawings to understand how cells and molecules interact in three dimensions. Traditional teaching approaches exclude students with visual impairments and disadvantage students with disabilities that affect their interpretation and processing of visual and spatial information, and also students who simply do not identify as "visual learners." By using new technologies to develop tactile teaching tools (TTTs) that can be employed in classrooms, we aim to create inclusive learning environments and more effectively instruct diverse learners. The advent of affordable and accessible 3D printing technology makes it possible to create tactile models that represent molecules, cells, and entire organisms more accurately than traditional visual representations. We describe the assessment of a 3D gene expression puzzle as a guided inquiry learning activity in which students must correctly assemble a series of components in order to achieve an output. Upon completion of the puzzle, the TTT provides tactile feedback through vibration to signal transcriptional activation. Analysis of pre- and postassessment performance demonstrated statistically significant increases in individual students' paired assessment scores in two different classroom implementations, with a greater effect size at a rural minority-serving institution than an urban R1 university. These encouraging preliminary data suggest that TTTs with guided-inquiry learning disproportionately benefit disadvantaged student populations and could serve as a tool in leveling the playing field when teaching abstract biological concepts in diverse educational settings.

20.
J Org Chem ; 85(4): 2597-2606, 2020 02 21.
Article in English | MEDLINE | ID: mdl-31917921

ABSTRACT

Selectivities in (4 + 2) and (2 + 2) cycloadditions of keteniminium cations with 1,3-dienes studied experimentally by Ghosez et al. were explored with ωB97X-D density functional theory. Reactions of keteniminium cations with 1,3-dienes are influenced by the s-cis or s-trans nature of the diene. s-Trans dienes react to give an intermediate enamine that leads to favored formation of (2 + 2) cycloadducts across the keteniminium C-C bond. The first step of the cycloaddition is rate-determining, and reaction occurs by attack on the central carbon of the keteniminium cation and subsequent C-C bond formation. In contrast, s-cis constrained dienes lead to preferential formation of (4 + 2) products by both stepwise and concerted mechanisms involving regioselective addition to the keteniminium C-N bond. Diels-Alder reaction occurs via a concerted mechanism if the diene termini are held in close proximity, as in cyclopentadiene.


Subject(s)
Polyenes , Cations , Cycloaddition Reaction , Molecular Conformation , Stereoisomerism
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