Multigene Phylogenetics and Morphology Reveal Five Novel Lasiodiplodia Species Associated with Blueberries.

Botryosphaeriaceous fungi cause stem blight, canker and dieback in woody plants. During a survey on the fungal pathogens associated with blueberries in China, 135 blighted, cankered or dead blueberry branches were collected from Fujian and Shandong Provinces. Based on the morphological characterization and phylogenetic analyses of a concatenated ITS rDNA, tef1-α, TUB, and RPB2 loci, five new species of Lasiodiplodia, viz., L. clavispora, L. fujianensis, L. henanica, L. nanpingensis and L. paraphysoides were recognized. Detailed descriptions and illustrations, as well as multigene phylogenies, are provided in this paper. The diversity of plant pathogens on agriculturally and economically important plants is higher than anticipated.

Author Correction: Hidden mycota of pine needles: Molecular signatures from PCR-DGGE and Ribosomal DNA phylogenetic characterization of novel phylotypes.

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

Multigene phylogenetic analyses to establish new Valsaria species and taxonomic significance of spore ornamentation.

During our studies on fungal diversity from plant substrates, a new species of Valsaria was isolated from dead branches of Ostrya carpinifolia. The taxon is morphologically similar to other taxa in Valsariaceae and is characterized by pseudostromata, apically free pseudoparaphyses, bitunicate asci, and dark brown, 2-celled ascospores. However, it differs from extant species in number of guttules and ornamentation of spore. It is introduced herein as Valsaria ostryae sp. nov. within the family Valsariaceae. Multigene phylogenies based on combined LSU, ITS and RPB2 DNA sequence data generated from maximum likelihood, maximum parsimony and MrBayes analyses indicate that V. ostryae is basal to V. lopadostomoides and V. rudis and its establishment as a new species is strongly supported. No discordance was found between our morphological and phylogenetic species boundaries as postulated by other researchers and our molecular data strongly supports ornamentation of spore as useful for species delineation. Valsaria species do not appear to be host specific. Full morphological details are provided herein and phylogenetic relationships of Valsaria species are also discussed in light with host association.

Hidden mycota of pine needles: Molecular signatures from PCR-DGGE and Ribosomal DNA phylogenetic characterization of novel phylotypes.

Previous studies for enumerating fungal communities on pine needles relied entirely on phenotypic diversity (microscopy) or identification based on DNA sequence data from those taxa recovered via cultural studies. To bypass limitations of the culturing methods and provide a more realistic diversity estimate, we employed and assessed a PCR-DGGE based method coupled with rDNA phylogenetic sequence analyses to characterize fungal taxa associated with pine needles. Fresh (living) and decayed needles from three hosts of the Pinaceae (Keteleeria fortunei, Pinus elliottii and P. massoniana) were examined. Morphological studies reveal that the most abundant species associated with decayed needles were Cladosporium cladosporioides and an unidentified Trichoderma species followed by Gliocephalotrichum sp., Gliocladium sp., Lophodermium pinastri, Paecilomyces varioti, Phaeostalagmus cyclosporus and a Phoma sp, which are commonly occurring fungi. Community genomic data from freshly collected and decayed pine needles recovered 40 operational taxonomic units, which appear to be mostly undetected members of the natural fungal consortium. Sequence analyses revealed a number of phylotypes or "species" that were not recovered using traditional morphological and cultural approaches previously used. Phylogenetic data from partial 18S rDNA sequence data reveal that most phylotypes represent potential novel phylogenetic fungal lineages with affinities to the Dothideomycetes, Leotiomycetes, Lecanoromycetes and Sordariomycetes and were not identical to previously known endophytes or saprobes. Although the major ecological roles of these phylotypes in pine needles are still enigmatic, this study provides new insights in hidden fungal diversity that mycologists are possibly ignoring given the discrepancies associated with available methods. To what extent do previously recovered identified species (either as saprobes or endophytes) from morphological or culturing studies act as pioneer decomposers or constitute an integral part of endophytic community warrants further investigation.

Metatranscriptomics analysis of mangroves habitats around Mauritius.

Mangroves are unique but endangered coastal ecosystems that play a vital role in the tropical and subtropical environments. Mauritius has two species of mangroves, Bruguiera gymnorrhiza (L.) Lam. and Rhizophora mucronata Lam., growing along its coast. The mangrove rhizosphere harbours a diverse microbial community and the use of RNA-sequencing can reveal both the taxonomic composition and active biochemical functions of the complex microbial community. Metatranscriptomic study was carried out by comparing the microbial community of rhizosphere microbiomes sediments from the two mangroves species. The study also included a comparison between a natural and a man grown mangrove microbiome. Overall, samples showed predominance by Proteobacteria, Bacteroidetes and Firmicutes, with high abundance of sulphate reducers, nitrogen reducers and methanogens. Significant difference was, however, noted at both taxonomic and functional levels among the mangroves species. The data also indicate that the microbial core involved in methane, nitrogen, and sulphur metabolism consisted mainly of Burkholderiaceae, Planctomycetaceae, Rhodobacteraceae, and Desulfobacteraceae. Also, genes encoding enzymes involved in carbon cycling, the metabolism of nitrogen, methane and sulphur were dominant in the rhizosphere of the natural mangrove ecosystem. To our knowledge, this is a first metatranscriptomic study on the microbiome of mangroves in the Mauritius, and our results provide the first insights in the range of functions and microbial diversity of the local mangrove species.

Dietary intake and lifestyle behaviors of children in Mauritius.

The purpose of the study was to explore the dietary intake, fruit, vegetable and energy intake and lifestyle behaviors among Mauritian children. A validated questionnaire was used, assessing dietary intake, mean energy intake, mean body mass index (BMI), lifestyle behaviors as well as nutritional knowledge (NK) among males and females. 336 children aged 6-12 years (165 males and 171 females) from 8 public primary schools were recruited. Statistical analyses revealed that children consumed less nutritious foods such as fruits, vegetables and whole grains and more of refined and calorie-laden foods, with no significant differences across genders. Mean energy intake of children was 1522 ± 282.4 kcal per day while mean BMI was 17.5 ± 4.03 kg/m2. Majority of children had a low-to-moderate physical activity level (PAL), with males being more active than females on average (P = 0.021). 88.7% of children watched TV for more than an hour daily, with 84.8% of them reporting to be eating during the process. Females were more likely to be breakfast skippers (P = 0.003). Maximum frequency of snacking was twice daily (72.7%) while consumption of fast food was once or twice weekly (44.0%). Results indicate the need for intervention with aim of improving the dietary and life quality of children in Mauritius.

Early bacterial biofilm colonizers in the coastal waters of Mauritius

Background: The past years have witnessed a growing number of researches in biofilm forming communities due to their environmental and maritime industrial implications. To gain a better understanding of the early bacterial biofilm community, microfiber nets were used as artificial substrates and incubated for a period of 24 h in Mauritian coastal waters. Next-generation sequencing technologies were employed as a tool for identification of early bacterial communities. Different genes associated with quorum sensing and cell motility were further investigated. Results: Proteobacteria were identified as the predominant bacterial microorganisms in the biofilm within the 24 h incubation, of which members affiliated to Gammaproteobacteria, Alphaproteobacteria and Betaproteobacteria were among the most abundant classes. The biofilm community patterns were also driven by phyla such as Firmicutes, Bacteroidetes, Chloroflexi, Actinobacteria and Verrucomicrobia. The functional analysis based on KEGG classification indicated high activities in carbohydrate, lipid and amino acids metabolism. Different genes encoding for luxI, lasI, agrC, flhA, cheA and cheB showed the involvement of microbial members in quorum sensing and cell motility. Conclusion: This study provides both an insight on the early bacterial biofilm forming community and the genes involved in quorum sensing and bacterial cell motility.

Jatropha curcas L:Phytochemical, antimicrobial and larvicidal properties

Objective: To evaluate antimicrobial activities as well as the phytochemical and lav-icidal properties of different parts of Jatropha curcas L. (J. curcas) growing in Mauritius. Methods: Determination of the presence of phytochemicals in the crude plants extracts by test tube reactions. Disc diffusion method and microdilution method were used to detect the antimicrobial sensitivity and activity (minimal inhibitory concentration). The crude solvent extracts were also tested on the larvae of two insects, Bactrocera zonata and Bactrocera cucurbitae (Diptera, Tephritidae). Results: The antimicrobial activities were significantly dependent for the different crude plant extracts on the thirteen microorganisms tested. For the Gram-positive bacteria, the crude ethyl acetate extract was more efficient compared to the Gram-negative bacteria with both solvents being effective. The crude ethyl acetate extract of J. curcas bark and mature seed oil showed the highest efficacy. The highest mortality percentage was observed after 24 h for both Diptera flies with (66.67 ± 2.89)%of Bactrocera cucurbitae larvae killed by ethyl acetate extract of J. curcas bark. Conclusions: This paper compared the different J. curcas plant sections with respect to the effectiveness of the plant as a potential candidate for new pharmaceuticals. The lar-vicidal effect was also studied in order to demonstrate the dual purpose of the plant.

Repetitive element palindromic PCR (rep-PCR) as a genetic tool to study interspecific diversity in Euphorbiaceae family

Background The classification of diversity in germplasm collections is important for plant breeding. The repetitive element palindromic-polymerase chain reaction (rep-PCR) technique was used to investigate inter-specific diversity within 17 species from the Euphorbiaceae family using REP and BOX primers. Results The agglomerative cluster analysis was used to evaluate the scoring data. BOX and REP gave amplification with polymorphism of 98.84% and 100% respectively. REP marker demarcated between the subgenus peltatae. Both markers confirmed Jatropha tanjorensis as a natural hybrid between Jatropha gossypifolia and Jatropha curcas. Five random sequences from the rep-PCR gels were chosen, cloned and sequenced. The blast results demonstrated that the amplified products were from the mitochondrial genomes. Conclusion The rep-PCR molecular tool can be used to characterize diversity in plants as they are suitable for distinguishing eukaryotic genomes effectively.

Antimicrobial, phytochemical and larvicidal properties of Jatropha multifida Linn.

OBJECTIVE: To evaluate the phytochemical, antimicrobial and insecticidal properties of different extracts of Jatropha multifida (J. multifida) in Mauritius. METHODS: Qualitative and quantitative methods were used for the determination of the presence of phytochemicals in the crude solvent extracts of J. multifida. The antimicrobial sensitivity (disc diffusion method) and antibacterial activity (microdilution method) of 13 microorganisms were reported. The insecticidal properties of the crude solvent extracts were tested against the larvae of two insects, Bactrocera zonata and Bactrocera cucurbitae (Diptera: Tephritidae), which cause important economic losses to local fruits. RESULTS: Ethyl acetate was proved to be a good solvent for extraction. J. multifida showed very interesting activity against Bacillus algicola and Staphylococcus epidermis. The plant also showed good larvacidal activity against Bactrocera zonata. CONCLUSIONS: This paper reports the dual use of J. multifida, hence further studies can be made in term of application.

A comparison of polyphenolic content, antioxidant activity and insecticidal properties of Jatropha species and wild Ricinus communis L. found in Mauritius.

OBJECTIVE: To evaluate the phytochemical, antimicrobial and insecticidal properties of different Jatropha species and Ricinus communis (castor) (R. communis) growing in Mauritius. METHODS: Qualitative and quantitative methods were used for the determination of the presence of phytochemicals in the crude plants solvent extracts. The antimicrobial sensitivity (disc diffusion method) and Antibacterial activity (MIC-microdilution method) of 13 microorganisms were studied. The insecticidal properties of the crude solvent extracts against larvae of two insects, Bactrocera zonata and Bactrocera cucurbitae (Diptera, Tephritidae), which cause important economic losses to local fruits were also demonstrated. RESULTS: Ethyl acetate was proved to be a good solvent for extraction. Jatropha multifida showed very interesting activity against Bacillus algicola and Staphylococcus epidermis. Both R. communis and Jatropha multifida were proved to be very effective as biopesticide against different types of insect larvae. CONCLUSIONS: This study was able to demonstrate that Jatropha species as well as R. communis growing in Mauritius possess antimicrobial, phytochemical and insecticidal properties.