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1.
Conserv Biol ; 38(3): e14228, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38441344

ABSTRACT

Raptors are threatened by anthropogenic land modifications, but targeted quantitative assessment of these impacts is lacking. We conducted the first global quantitative evaluation of the impacts of human-modified land on raptors. We used eBird data from 2001 to 2020 on 425 raptor species and occupancy models to assess the impacts of human-modified land on raptor distribution. The mean spatiotemporal correlations of human settlement, cropland, and pasture with raptor occupancy probability were -0.048 (SE 0.031), -0.134 (0.032), and -0.145 (0.032), respectively. The mean sensitivity of raptor occupancy probability to settlement, cropland, and pasture was -5.760 (2.266), -3.128 (1.540), and -2.402 (1.551), respectively. The occupancy probability of raptors with a large body mass was more negatively correlated with cropland (phylogenetic generalized least squares regressions: slope = -0.052 [SE 0.022], t = -2.335, df = 1, 407, p = 0.020, λ = 0.006) and more positively correlated with pasture (slope = 0.047 [0.022], t = 2.118, df = 1, 407, p = 0.035, λ = 0.013). The occupancy probability of raptors with a more extensive range size was more positively correlated with cropland (slope = 0.002 [0.004], t = 0.399, df = 1, 407, p < 0.001, λ = 0.000). Raptors that prefer open habitats were more positively correlated with cropland (analysis of variance: F = 3.424, df = 2, p = 0.034, λ = 0.000) and pasture (F = 6.577, df = 2, p = 0.002, λ = 0.000). In Africa and South America, where raptor species are most abundant, raptor occupancy probability decreased over 20 years, most likely due to habitat fragmentation associated with human land modification. Although raptors with different ecological characteristics had different responses to human land modification, the impacts of settlement, cropland, and pasture on mean raptor occupancy probability were negative, regardless of space and time.


Evaluación cuantitativa del impacto global de la modificación humana del uso de suelo sobre las rapaces Resumen Las rapaces se encuentran amenazadas por las modificaciones de suelo antropogénicas, pero la evaluación cuantitativa focalizada de estos impactos es muy escasa. Realizamos la primera evaluación cuantitativa mundial del impacto del suelo modificado por humanos sobre las rapaces. Usamos datos de eBird desde 2001 hasta 2020 sobre 425 especies rapaces y modelos de ocupación para evaluar el impacto del suelo modificado por humanos sobre la distribución de estas especies. La correlación espaciotemporal media de los asentamientos humanos, las tierras de cultivo y las pasturas con probabilidad de ocupación por rapaces fueron ­0,048 (SE 0,031), ­0,134 (0,032) y ­0,145 (0,032), respectivamente. La sensibilidad media de la probabilidad de ocupación de las rapaces a los asentamientos, las tierras de cultivo y las pasturas fue de ­5,760 (2,266), ­3,128 (1,540) y ­2,402 (1,551), respectivamente. La probabilidad de ocupación de las rapaces con gran masa corporal tuvo una correlación más negativa con las tierras de cultivo (regresiones filogenéticas por mínimos cuadrados generalizados: pendiente =­0. 052 [SE 0,022], t = ­2,335, gl = 1, 407, p = 0,020, λ = 0,006) y una correlación más positiva con los pastos (pendiente = 0,047 [0,022], t = 2,118, gl = 1, 407, p = 0,035, λ = 0,013). La probabilidad de ocupación de las rapaces con un área de distribución más extensa tuvo una correlación más positiva con las tierras de cultivo (pendiente = 0,002 [0,004], t = 0,399, gl = 1, 407, p < 0,001, λ = 0,000). Las rapaces que prefieren hábitats abiertos tuvieron una correlación más positiva con las tierras de cultivo (análisis de la varianza: F = 3,424, gl = 2, p = 0,034, λ = 0,000) y los pastos (F = 6,577, df = 2, p = 0,002, λ = 0,000). En África y América del Sur, en donde son más abundantes las especies rapaces, la probabilidad de ocupación de las rapaces disminuyó a lo largo de 20 años, probablemente debido a la fragmentación de hábitat asociada con la modificación del suelo por humanos. Aunque las rapaces con características ecológicas diferentes tienen diferentes respuestas a estas modificaciones, el impacto de los asentamientos, las tierras de cultivo y las pasturas fue negativo para la probabilidad de ocupación media de las rapaces, sin importar el espacio ni el tiempo.


Subject(s)
Conservation of Natural Resources , Raptors , Raptors/physiology , Animals , Human Activities , Humans , Agriculture , Ecosystem , Animal Distribution
2.
Sci Total Environ ; 913: 169417, 2024 Feb 25.
Article in English | MEDLINE | ID: mdl-38143005

ABSTRACT

Livestock grazing alters the diversity and composition of plants and soil biota in grassland ecosystems. However, whether and how grazing affects plant-soil biota interactions are limited. Here, we performed a field investigation on the Tibetan grasslands to determine the relationships between plant community properties (biomass, diversity and richness) and soil biota (abundance, diversity and composition of bacteria, fungi and nematodes) in the long-term yak grazing and ungrazed plots, and responses of plant-soil biota linkages to grazing in alpine meadows and alpine swampy meadows were compared. The results found that grazing did not cause significant changes in plant community properties but increased the soil water content. Further, grazing weakened plant-soil microbes/nematode relationships in alpine meadows. The bacterial and fungal abundances were correlated with plant belowground biomass and Simpson index in the ungrazed plots of alpine meadows, while the correlation was not significant under grazing. Bacterial composition was correlated with plant richness only in the ungrazed meadows. Plant-soil nematode linkages were more sensitive to grazing than plant-microbes linkages. Grazing decoupled the relationships between the abundances of nematode trophic groups and plant aboveground biomass, richness and Simpson index in alpine meadows, while the decoupling phenomenon is less evident in alpine swampy meadows. The SEM results indicate that grazing altered the plant above- and belowground biomass to affect the soil nematode community, while influenced soil microbes only through alterations of plant belowground biomass. The findings highlight the importance of grazing in influencing the interactions between aboveground plant communities and soil biological communities in Tibetan grasslands.


Subject(s)
Ecosystem , Nematoda , Animals , Grassland , Soil , Biota , Biomass , Plants , Nematoda/physiology
3.
Mol Ecol ; 32(19): 5338-5349, 2023 10.
Article in English | MEDLINE | ID: mdl-37602937

ABSTRACT

Sex chromosomes are popularized as a special role in driving speciation. However, the empirical evidence from natural population processes has been limited to organisms with degenerated sex chromosomes, where hemizygosity is mainly considered to act as the driver of reproductive isolation. Here, we examined several hybrid zones of torrent frog Amolops mantzorum species complex, using an approach by mapping species-diagnostic loci onto the reference genome to compare sex-linked versus autosomal patterns of introgression. We find little support in sex-linked incompatibilities for large X-effects for these populations in hybrid zones with homomorphic sex chromosomes, due to the absence of the hemizygous effects. As expected, the large X-effects were not found in those with heteromorphic but newly evolved sex chromosomes, owing to the absence of strong genetic differences between X and Y chromosomes. The available data so far on amphibians suggest little role for sex-linked genes in speciation. The large X-effects in those with nascent sex chromosomes may not be as ubiquitous as presumed across the animal kingdom.


Subject(s)
Anura , Sex Chromosomes , Animals , Sex Chromosomes/genetics , Anura/genetics , Y Chromosome/genetics , Ranidae/genetics , Genome
4.
Ecol Evol ; 13(4): e9992, 2023 Apr.
Article in English | MEDLINE | ID: mdl-37091566

ABSTRACT

Long recognized as a threat to wildlife, particularly for large carnivores, livestock grazing in protected areas can potentially undermine conservation objectives. The interspecific interactions among livestock, snow leopards (Panthera uncia), and their wild prey in fragile Asian highland ecosystems have been a subject of debate. We strategically deployed 164 camera traps in the Wolong National Nature Reserve to systematically investigate the activities of snow leopards, their primary wild ungulate prey species, and free-ranging livestock. We found that snow leopard habitat use was influenced by both wild prey and livestock. Blue sheep served as the main wild prey that spatially attracted snow leopards and coexisted with yaks while free-ranging yaks significantly restricted snow leopard habitat use both temporally and spatially. This study challenges the conventional understanding that livestock indirectly impacts large carnivores by competing with and displacing wild prey. Our findings highlight that free-ranging yaks within the alpine canyon terrain could directly limit snow leopard habitat use, suggesting a potential risk of grazing in reducing apex predator distribution and jeopardizing their populations. Consequently, managing their coexistence in shared habitats requires a more nuanced approach. Furthermore, our research underscores the importance of further research efforts aimed at enhancing our comprehension of the complex interplay within animal communities and ecosystems. This knowledge will contribute to the development of informed, evidence-based conservation strategies and policies.

5.
Animals (Basel) ; 12(19)2022 Sep 28.
Article in English | MEDLINE | ID: mdl-36230335

ABSTRACT

Climate change is affecting biodiversity by altering the geographical distribution range of species, and this effect is amplified in climate-sensitive areas. Studying the geographic distribution of flagship species in response to climate change is important for the long-term conservation of species and the maintenance of regional biodiversity. Therefore, we collected field survey records from 2016 to 2020 and conducted field surveys of black-necked cranes in the Shaluli Mountains (SLLMs) in May-June and August-October 2021; 103 breeding records were acquired totally, and the geographical distribution range under the current and four future climate scenarios was modeled with the MaxEnt model to predict the impact of climate change on its distribution and habitat quality. The results showed that 152 black-necked cranes were surveyed in seven counties of SLLMs in total; the estimated number of black-necked cranes in the entire SLLMs was about 200. The currently suitable habitat area is 27,122 km2, mainly distributed in gentle meadows and wetland habitats along the lake where the Annual Mean Temperature is -1 °C and the Mean Diurnal Range (16 °C) and Precipitation Seasonality (105) are comparatively large. Furthermore, the breeding range would expand to varying degrees under future climate scenarios and showed a migration trend toward the northwest and higher elevation. Besides, as time goes by, the habitat for black-necked cranes in SLLMs would become more homogeneous and more suitable. The conservation effectiveness of the existing reserve network would keep stable with climate change, although there are large conservation gaps between protected areas, and these gaps will gradually expand over time. Overall, this study provides a preliminary understanding of the population and distribution and predicts the future distribution of black-necked cranes in the SLLMs. It also demonstrates the importance of SLLMs for protecting the central population of black-necked cranes and maintaining regional biodiversity. Therefore, we recommend long-term monitoring and conservation of the black-necked crane population and wetland resources in the region.

6.
Int J Mol Sci ; 23(19)2022 Sep 22.
Article in English | MEDLINE | ID: mdl-36232446

ABSTRACT

In sharp contrast to birds and mammals, in numerous cold-blooded vertebrates, sex chromosomes have been described as homomorphic. This sex chromosome homomorphy has been suggested to result from the high turnovers often observed across deeply diverged clades. However, little is known about the tempo and mode of sex chromosome evolution among the most closely related species. Here, we examined the evolution of sex chromosome among nine species of the torrent frog genus Amolops. We analyzed male and female GBS and RAD-seq from 182 individuals and performed PCR verification for 176 individuals. We identified signatures of sex chromosomes involving two pairs of chromosomes. We found that sex-chromosome homomorphy results from both turnover and X-Y recombination in the Amolops species, which simultaneously exhibits heterogeneous evolution on homologous and non-homologous sex chromosomes. A low turnover rate of non-homologous sex chromosomes exists in these torrent frogs. The ongoing X-Y recombination in homologous sex chromosomes will act as an indispensable force in preventing sex chromosomes from differentiating.


Subject(s)
Recombination, Genetic , Sex Chromosomes , Animals , Anura , Female , Humans , Male , Mammals/genetics , Ranidae/genetics , Reptiles/genetics , Sex Chromosomes/genetics
7.
Animals (Basel) ; 12(18)2022 Sep 15.
Article in English | MEDLINE | ID: mdl-36139299

ABSTRACT

Birds have been widely considered crucial indicators of biodiversity. It is essential to identify bird species precisely for biodiversity surveys. With the rapid development of artificial intelligence, bird species identification has been facilitated by deep learning using audio samples. Prior studies mainly focused on identifying several bird species using deep learning or machine learning based on acoustic features. In this paper, we proposed a novel deep learning method to better identify a large number of bird species based on their call. The proposed method was made of LSTM (Long Short-Term Memory) with coordinate attention. More than 70,000 bird-call audio clips, including 264 bird species, were collected from Xeno-Canto. An evaluation experiment showed that our proposed network achieved 77.43% mean average precision (mAP), which indicates that our proposed network is valuable for automatically identifying a massive number of bird species based on acoustic features and avian biodiversity monitoring.

8.
Sci Adv ; 8(30): eabl8637, 2022 Jul 29.
Article in English | MEDLINE | ID: mdl-35905183

ABSTRACT

Historically, giant panda conservation in China has been compromised by disparate management of protected areas. It is thus crucial to address how giant panda populations can be managed cohesively on a landscape scale, an opportunity offered by China's newly established Giant Panda National Park. Here, we evaluated giant panda populations in a metapopulation context, based on range-wide data from the Fourth National Giant Panda Survey. We delineated metapopulations by geographic range, relative abundance, and relative density and assessed the extent of human disturbance each metapopulation faced. We found density-dependent and disturbance-influenced effects on habitat selection across metapopulations. We determined the main effects faced by each metapopulation regarding area sensitivity, population size, intraspecific competition, and disturbance. To enhance the landscape-scale conservation of giant pandas and various other wildlife across China's national park system, we propose that metapopulation management incorporates population status along with density-dependent and disturbance-related effects on habitat selection.

9.
J Environ Manage ; 306: 114485, 2022 Mar 15.
Article in English | MEDLINE | ID: mdl-35033892

ABSTRACT

China's forests were severely degraded by human activities during the latter half of the 20th century. Therefore, China enacted ambitious programs of natural forest protection and afforestation to protect and expand forests. Yet it is unclear how the programs, especially the designation of forest reserves, have affected forest cover and fragmentation. We evaluated the effectiveness of China's national forest reserves designated since 1990 in conserving forests, by analyzing four forest metrics (i.e., percentage forest cover, mean forest patch size, mean forest patch radius of gyration, and forest patch cohesion index) derived from a newly produced 30 m annual China land cover dataset from 1990 to 2019. We found that overall forest cover increased and fragmentation decreased from baseline years, when reserves were designated, to 2019 in both reserves and their surrounding areas, and only the increase in forest cover relative to baseline was significantly greater in reserves than in surrounding areas. The designation time of reserves under national protection had no considerable effect on changes in the four metrics, but for zonation, the core zone showed a significantly higher increase in forest patch cohesion index relative to baseline than the buffer and transition zones. Nevertheless, forest cover declined and fragmentation increased in highly forested reserves, suggesting destructive human activities and ineffective management. Thus, forest protection and regeneration programs were moderately successful. We recommend that there is significant improvement needed to ensure greater protection of existing forests and reduction of threats to promote effective management.


Subject(s)
Conservation of Natural Resources , Forests , China , Humans
10.
Sci Total Environ ; 806(Pt 4): 150944, 2022 Feb 01.
Article in English | MEDLINE | ID: mdl-34655626

ABSTRACT

The charismatic giant panda (Ailuropoda melanoleuca) is an iconic species of wildlife conservation worldwide. As the most effective measure to protect giant pandas and their habitats, China has established 67 giant panda nature reserves (GPNR) during the last five decades, which also bring benefits to many sympatric medium- and large-bodied mammals (MLM). To better inform the planning of the GPNR network with the view of preserving regional MLM diversity, we investigated the zeta diversity (a novel index to measure species compositional turnover considering the contributions of both rare and common species) patterns (i.e. zeta decline and retention rate curve) of MLMs across 40 GPNRs. The effects of species' body mass and conservation status on the zeta diversity patterns were tested. Further, we applied the multi-site generalized dissimilarity modelling (MS-GDM) framework to explore the impacts of environmental and geographic distances on MLM turnover. The results indicated that there are a core set of 17 MLM species sympatric with the giant panda in the GPNRs. Species' body mass can affect the patterns of zeta decline and retention rate curves, and the number of large-bodied species shared by multiple GPNRs is higher than that of medium-bodied species across zeta orders. The MS-GDM revealed the important roles of difference in habitat heterogeneity and spatial distance between GPNRs in driving MLM turnover. Consequently, we advocate maintaining and increasing the diversity of (natural) habitats in GPNRs to protect giant panda's sympatric MLM diversity. The government should consider optimizing the GPNR network (e.g. incorporating multiple small GPNRs into one single large reserve) to capture the most turnover of MLMs, and the newly-established Giant Panda National Park is relevant to fulfilling this long-term goal.


Subject(s)
Ursidae , Animals , China , Conservation of Natural Resources , Ecosystem , Mammals
11.
Front Zool ; 18(1): 37, 2021 Aug 04.
Article in English | MEDLINE | ID: mdl-34348772

ABSTRACT

BACKGROUND: The acoustic adaptation hypothesis (AAH) states that signals should evolve towards an optimal transmission of the intended information from senders to intended receivers given the environmental constraints of the medium that they traverse. To date, most AAH studies have focused on the effect of stratified vegetation on signal propagation. These studies, based on the AAH, predict that acoustic signals should experience less attenuation and degradation where habitats are less acoustically complex. Here, we explored this effect by including an environmental noise dimension to test some AAH predictions in two clades of widespread amphibians (Bufonidae and Ranidae) that actively use acoustic signals for communication. By using data from 106 species in these clades, we focused on the characterization of the differences in dominant frequency (DF) and frequency contour (i.e., frequency modulation [FM] and harmonic performances) of mating calls and compared them between species that inhabit flowing-water or still-water environments. RESULTS: After including temperature, body size, habitat type and phylogenetic relationships, we found that DF differences among species were explained mostly by body size and habitat structure. We also showed that species living in lentic habitats tend to have advertisement calls characterized by well-defined FM and harmonics. Likewise, our results suggest that flowing-water habitats can constrain the evolutionary trajectories of the frequency-contour traits of advertisement calls in these anurans. CONCLUSIONS: Our results may support AAH predictions in frogs that vocalize in noisy habitats because flowing-water environments often produce persistent ambient noise. For instance, these anurans tend to generate vocalizations with less well-defined FM and harmonic traits. These findings may help us understand how noise in the environment can influence natural selection as it shapes acoustic signals in affected species.

12.
Mitochondrial DNA B Resour ; 6(9): 2565-2566, 2021.
Article in English | MEDLINE | ID: mdl-34377830

ABSTRACT

We describe the mitochondrial genome sequence of a torrent frog, Amolops jinjiangensis. The mitogenome was extracted and assembled for the first time by restriction site-associated DNA sequencing (RAD-seq). The total length is 17,780 bp, containing 13 protein-coding genes (PCGs), two ribosomal RNA genes, 22 transfer RNA genes, and one control region. The gene rearrangement was detected as the W-OL-ANCY gene cluster which consisted with several published Amolops mitogenomes. The phylogenetic tree was constructed based on 13 protein-coding genes of A. jinjiangensis and 11 closely related species by Bayesian analyses.

13.
Animals (Basel) ; 10(11)2020 Oct 28.
Article in English | MEDLINE | ID: mdl-33126424

ABSTRACT

To effectively protect a species, understanding its habitat needs and threats across its life-history stages is necessary. The black-necked crane (Grus nigricollis) is an endangered wetland bird species of the Qinghai-Tibetan Plateau, which is an important grazing area in China. To overcome the conflict between increasing grazing activities and the protection of wild cranes, we investigated the variation of habitat utilization within the home range of cranes at different stages (preincubation, incubation, postfledging, and fully fledged stages). We manually tracked 13 pairs of cranes in the Zoige international wetland, used the fixed-kernel-polygon (FKP) method to determine home-range size, and used satellite images to identify different habitat types. The average home-range size was 143.38 ± 34.46 ha. Cranes were most often located in meadow habitats followed by marsh meadows and marshes. During the postfledging stage, home-range size was significantly decreased, with the proportion of marsh habitat slightly increased. Since this stage is crucial for young-crane survival, research on the importance of marshes and effective protection measures should be further strengthened.

14.
Mol Genet Genomics ; 295(1): 31-46, 2020 Jan.
Article in English | MEDLINE | ID: mdl-31414227

ABSTRACT

The buff-throated partridge (Tetraophasis szechenyii) is a hypoxia-tolerant bird living in an extremely inhospitable high-altitude environment, which has high ultraviolet (UV) radiation as well as a low oxygen supply when compared with low-altitude areas. To further understand the molecular genetic mechanisms of the high-altitude adaptation of the buff-throated partridges, we de novo assembled the complete genome of the buff-throated partridge. Comparative genomics revealed that positively selected hypoxia-related genes in the buff-throated partridge were distributed in the HIF-1 signaling pathway (map04066), response to hypoxia (GO:0001666), response to oxygen-containing compound (GO:1901700), ATP binding (GO:0005524), and angiogenesis (GO:0001525). Of these positively selected hypoxia-related genes, one positively selected gene (LONP1) had one buff-throated partridge-specific missense mutation which was classified as deleterious by PolyPhen-2. Moreover, positively selected genes in the buff-throated partridge were enriched in cellular response to DNA damage stimulus (corrected P value: 0.028006) and DNA repair (corrected P value: 0.044549), which was related to the increased exposure of the buff-throated partridge to UV radiation. Compared with other avian genomes, the buff-throated partridge showed expansion in genes associated with steroid hormone receptor activity and contractions in genes related to immune and olfactory perception. Furthermore, comparisons between the buff-throated partridge genome and red junglefowl genome revealed a conserved genome structure and provided strong evidence of the sibling relationship between Tetraophasis and Lophophorus. Our data and analysis contributed to the study of Phasianidae evolutionary history and provided new insights into the potential adaptation mechanisms to the high altitude employed by the buff-throated partridge.


Subject(s)
Adaptation, Physiological/genetics , Birds/genetics , Altitude , Animals , Biological Evolution , Genome/genetics , Genome-Wide Association Study/methods , Hypoxia/genetics , Male , Selection, Genetic/genetics
15.
Genome Biol Evol ; 11(12): 3332-3340, 2019 12 01.
Article in English | MEDLINE | ID: mdl-31725151

ABSTRACT

The black-necked crane (Grus nigricollis) which inhabits high-altitude areas has the largest body size of the world's 15 crane species, and is classified as threatened by the IUCN. To support further studies on population genetics and genomics, we present a high-quality genome assembly based on both Illumina and nanopore sequencing. In total, 54.59 Gb Illumina short reads and 116.5 Gb nanopore long reads were generated. The 1.23 Gb assembled genome has a high contig N50 of 17.89 Mb, and has a longest contig of 87.83 Mb. The completeness (97.7%) of the draft genome was evaluated with single-copy orthologous genes using BUSCO. We identified 17,789 genes and found that 8.11% of the genome is composed of repetitive elements. In total, 84 of the 2,272 one-to-one orthologous genes were under positive selection in the black-necked crane lineage. SNP-based inference indicated two bottlenecks in the recent demographic trajectories of the black-necked crane. The genome information will contribute to future study of crane evolutionary history and provide new insights into the potential adaptation mechanisms of the black-necked crane to its high-altitude habitat.


Subject(s)
Birds/genetics , Genome/genetics , Nanopore Sequencing , Altitude , Animals , Birds/classification , Female , Genetic Variation , Genomics , Phylogeny , Proteins/genetics , Repetitive Sequences, Nucleic Acid , Selection, Genetic
16.
Ecol Evol ; 9(4): 1809-1819, 2019 Feb.
Article in English | MEDLINE | ID: mdl-30847074

ABSTRACT

The giant panda is an example of a species that has faced extensive historical habitat fragmentation, and anthropogenic disturbance and is assumed to be isolated in numerous subpopulations with limited gene flow between them. To investigate the population size, health, and connectivity of pandas in a key habitat area, we noninvasively collected a total of 539 fresh wild giant panda fecal samples for DNA extraction within Wolong Nature Reserve, Sichuan, China. Seven validated tetra-microsatellite markers were used to analyze each sample, and a total of 142 unique genotypes were identified. Nonspatial and spatial capture-recapture models estimated the population size of the reserve at 164 and 137 individuals (95% confidence intervals 153-175 and 115-163), respectively. Relatively high levels of genetic variation and low levels of inbreeding were estimated, indicating adequate genetic diversity. Surprisingly, no significant genetic boundaries were found within the population despite the national road G350 that bisects the reserve, which is also bordered with patches of development and agricultural land. We attribute this to high rates of migration, with four giant panda road-crossing events confirmed within a year based on repeated captures of individuals. This likely means that giant panda populations within mountain ranges are better connected than previously thought. Increased development and tourism traffic in the area and throughout the current panda distribution pose a threat of increasing population isolation, however. Maintaining and restoring adequate habitat corridors for dispersal is thus a vital step for preserving the levels of gene flow seen in our analysis and the continued conservation of the giant panda meta-population in both Wolong and throughout their current range.

17.
Ecol Evol ; 9(4): 2096-2105, 2019 Feb.
Article in English | MEDLINE | ID: mdl-30847095

ABSTRACT

Variation in grassland vegetation structure influences the habitat selection of insectivorous birds. This variation presents a trade-off for insectivorous predators: Arthropod abundance increases with vegetation height and heterogeneity, but access to arthropod prey items decreases. In contrast, grazing by large herbivores reduces and homogenizes vegetation, decreasing total arthropod abundance and diversity. However, the presence of livestock dung may help counteract the overall reduction in invertebrates by increasing arthropods associated with dung. It is unclear, however, how the presence of arthropod prey in dung contributes to overall habitat selection for insectivorous birds or how dung-associated arthropods affect trade-offs between vegetation structure, arthropod abundance, and access to prey. To explore these relationships, we studied habitat selection of the Black-necked Crane (Grus nigricollis), a large omnivorous bird that breeds on the Qinghai-Tibet Plateau. We assessed the relationships between habitat selection of cranes and vegetation structure, arthropod abundance, and the presence of yak dung. We found that Black-necked Cranes disproportionately foraged in grassland patches with short sward height, low sward height heterogeneity, and high numbers of dry yak dung, despite these habitats having lower total arthropod abundance. Although total arthropod abundance is lower, these habitats are supplemented with dry yak dung, which are associated with coleopteran larvae, making dung pats an indicator of food resources for breeding Black-necked Cranes. Coleopteran adults and larvae in yak dung appear to be an important factor influencing the habitat selection of Black-necked Cranes and should be considered when assessing grassland foraging trade-offs of insectivorous birds. This research provides new insights into the role of livestock dung in defining foraging habitats and resources for insectivorous predators.

18.
Twin Res Hum Genet ; 21(6): 527-532, 2018 12.
Article in English | MEDLINE | ID: mdl-30375300

ABSTRACT

The giant panda, native to mountains of south-west China, is one of the world's rarest bear species and is subject to considerable conservation effort. In captivity, the proportion of twins accounts for 54% of the total number of births. To date, little is known about zygosity in panda populations - specifically, the proportion of monozygotic and dizygotic twins. In this study, we used 10 microsatellite markers for reliable zygosity testing, and the probability of monozygotic twins was 99.963% when all 10 markers were concordant. Out of 43 studied twin pairs, no MZ twins were found, indicating that there may be no identical panda twins (or the incidence is very low). We speculate that the fertilized eggs of giant pandas do not have the capability to split into two identical embryos, or that this ability is very poor, which is likely due to delayed implantation that is common in bear species. The results of this study deepen our understanding of giant panda breeding, yield insight into panda twins' likely mechanism of formation, and reduce the uncertainty of individual identity in wild population surveys.


Subject(s)
Microsatellite Repeats , Twins, Dizygotic/genetics , Twins, Monozygotic/genetics , Ursidae/genetics , Animals , Female , Genotype , Male
19.
Ecol Evol ; 8(23): 11733-11741, 2018 Dec.
Article in English | MEDLINE | ID: mdl-30598771

ABSTRACT

Noise is one of the main factors that can influence the processes of sound communication across a wide range of animal groups. Although the effects of ambient noise on animal communication, including anthropogenic noise, have received increasing attention, few studies have examined changes in the fine structure of acoustic signals produced by vocalizing species in constantly noisy environments. Here, we used natural recordings to determine the associations between stream noise and call parameters in the little torrent frog (Amolops torrentis). We also used playbacks of stream noise recorded in natural habitats and playbacks of white noise to examine how male vocal signals change with increasing noise levels. The results show that noise intensity has a significant effect on male call frequency, but not on call amplitude or other call characteristics. Based on this evidence, we suggest that in streamside species stream noise drives males to alter call frequency and call as loudly as possible in order to improve discriminability. These findings provide insights into the role played by ecological selection in the evolution of noise-dependent anuran vocal plasticity.

20.
Glob Chang Biol ; 24(4): 1804-1816, 2018 04.
Article in English | MEDLINE | ID: mdl-29251797

ABSTRACT

Threatened and endangered species are more vulnerable to climate change due to small population and specific geographical distribution. Therefore, identifying and incorporating the biological processes underlying a species' adaptation to its environment are important for determining whether they can persist in situ. Correlative models are widely used to predict species' distribution changes, but generally fail to capture the buffering capacity of organisms. Giant pandas (Ailuropoda melanoleuca) live in topographically complex mountains and are known to avoid heat stress. Although many studies have found that climate change will lead to severe habitat loss and threaten previous conservation efforts, the mechanisms underlying panda's responses to climate change have not been explored. Here, we present a case study in Daxiangling Mountains, one of the six Mountain Systems that giant panda distributes. We used a mechanistic model, Niche Mapper, to explore what are likely panda habitat response to climate change taking physiological, behavioral and ecological responses into account, through which we map panda's climatic suitable activity area (SAA) for the first time. We combined SAA with bamboo forest distribution to yield highly suitable habitat (HSH) and seasonal suitable habitat (SSH), and their temporal dynamics under climate change were predicted. In general, SAA in the hottest month (July) would reduce 11.7%-52.2% by 2070, which is more moderate than predicted bamboo habitat loss (45.6%-86.9%). Limited by the availability of bamboo and forest, panda's suitable habitat loss increases, and only 15.5%-68.8% of current HSH would remain in 2070. Our method of mechanistic modeling can help to distinguish whether habitat loss is caused by thermal environmental deterioration or food loss under climate change. Furthermore, mechanistic models can produce robust predictions by incorporating ecophysiological feedbacks and minimizing extrapolation into novel environments. We suggest that a mechanistic approach should be incorporated into distribution predictions and conservation planning.


Subject(s)
Adaptation, Physiological , Climate Change , Forests , Ursidae/physiology , Animals , Endangered Species
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