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1.
PLoS One ; 19(4): e0299518, 2024.
Article in English | MEDLINE | ID: mdl-38603769

ABSTRACT

Wastewater irrigation is a common practice for agricultural systems in arid and semiarid zones, which can help to overcome water scarcity and contribute with nutrient inputs. Ammonia-oxidizing bacteria (AOB) and archaea (AOA) are key in the transformation of NH4+-N in soil and can be affected by variations in soil pH, EC, N and C content, or accumulation of pollutants, derived from wastewater irrigation. The objective of this study was to determine the changes in the ammonia oxidizing communities in agricultural soils irrigated with wastewater for different periods of time (25, 50, and 100 years), and in rainfed soils (never irrigated). The amoA gene encoding for the catalytic subunit of the ammonia monooxygenase was used as molecular reporter; it was quantified by qPCR and sequenced by high throughput sequencing, and changes in the community composition were associated with the soil physicochemical characteristics. Soils irrigated with wastewater showed up to five times more the abundance of ammonia oxidizers (based on 16S rRNA gene relative abundance and amoA gene copies) than those under rainfed agriculture. While the amoA-AOA: amoA-AOB ratio decreased from 9.8 in rainfed soils to 1.6 in soils irrigated for 100 years, indicating a favoring environment for AOB rather than AOA. Further, the community structure of both AOA and AOB changed during wastewater irrigation compared to rainfed soils, mainly due to the abundance variation of certain phylotypes. Finally, the significant correlation between soil pH and the ammonia oxidizing community structure was confirmed, mainly for AOB; being the main environmental driver of the ammonia oxidizer community. Also, a calculated toxicity index based on metals concentrations showed a correlation with AOB communities, while the content of carbon and nitrogen was more associated with AOA communities. The results indicate that wastewater irrigation influence ammonia oxidizers communities, manly by the changes in the physicochemical environment.


Subject(s)
Ammonia , Soil , Soil/chemistry , Ammonia/chemistry , Wastewater , RNA, Ribosomal, 16S , Archaea/genetics , Oxidation-Reduction , Soil Microbiology , Phylogeny , Nitrification
2.
Sports Med Arthrosc Rev ; 31(4): 90-96, 2023 Dec 01.
Article in English | MEDLINE | ID: mdl-38109160

ABSTRACT

Rotator cuff tears are potentially a career-ending injury for athletes. The surgeon must identify which patients will benefit from surgical repair. The factors to consider are age, type of sport, time since injury, athlete's level, and the patient's expectations. An essential and independent fact determining the surgical treatment is whether the damage is due to overuse or from a traumatic/collision injury. Some sports are more demanding than others resulting in different return-to-participation (RTP) rates. This RTP return rate can present a real challenge and more so by a desire to reach the pre-injury level of play. The incidence of rotator cuff tearing varies from one sport to another. In football players this can be 12% whereas for tennis players this incidence is 4% to 17%. The RTP rate must be considered when making treatment decisions and is influenced by the level of the athlete: for professional athletes, the rate is 61%, and for recreational 73%. When the surgeon and the patient decide on the surgical treatment, the surgeon must consider whether to perform a double-row or a single-row rotator cuff tendon repair. The decision-making and the surgical technique will be addressed.


Subject(s)
Rotator Cuff , Sports , Humans , Rotator Cuff/surgery , Athletes , Arthroplasty , Tendons
3.
Foods ; 12(14)2023 Jul 20.
Article in English | MEDLINE | ID: mdl-37509852

ABSTRACT

Amaranth has been recognized as a nutraceutical food because it contains high-quality proteins due to its adequate amino acid composition that covers the recommended requirements for children and adults. Since pre-Hispanic times, amaranth has been consumed as popped grain; the popping process improves its nutritive quality and improves its digestibility. Popped amaranth consumption has been associated with the recovery of malnourished children. However, there is no information on the impact that popped amaranth consumption has on gut microbiota composition. A non-randomized pilot trial was conducted to evaluate the changes in composition, structure, and function of the gut microbiota of stunted children who received four grams of popped amaranth daily for three months. Stool and serum were collected at the beginning and at the end of the trial. Short-chain fatty acids (SCFA) were quantified, and gut bacterial composition was analyzed by 16S rRNA gene sequencing. Biometry and hematology results showed that children had no pathology other than low height-for-age. A decrease in the relative abundance of Alistipes putredinis, Bacteroides coprocola, and Bacteroides stercoris bacteria related to inflammation and colitis, and an increase in the relative abundance of Akkermansia muciniphila and Streptococcus thermophiles bacteria associated with health and longevity, was observed. The results demonstrate that popped amaranth is a nutritious food that helps to combat childhood malnutrition through gut microbiota modulation.

4.
Drug Dev Ind Pharm ; 47(10): 1546-1555, 2021 Oct.
Article in English | MEDLINE | ID: mdl-34791982

ABSTRACT

OBJECTIVE: The aim of this work was to characterize Lippia graveolens oleoresins, obtained by Supercritical Fluid Extraction (SFE), from crops collected at different locations in Mexico. The antimicrobial effect of oleoresins was tested in reference strains and clinical isolates of susceptible and multidrug-resistant (MDR) strains of Enterococcus faecalis and Staphylococcus aureus. SIGNIFICANCE: The increasing of MDR strains is becoming a global public health problem that has led to the search for new treatments, and essential oils have resurged as a source of compounds with bactericidal functions. Oregano essential oil has attracted attention recently, however, this oil is mainly obtained by hydro-distillation (uses large amounts of water) or solvents extraction (potential contaminant). SFE has gained popularity as it represents an environmentally friendly technology. METHODS: L. graveolens oleoresins were obtained by SFE, total phenol contents were quantified by Folin-Ciocalteu method, the identification of compounds and thymol and carvacrol quantification was carried out by GC-MS. The antimicrobial activity was tested by minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC). RESULTS: SFE showed higher yields compared with the hydro-distillation process. L. graveolens grown in different Mexican locations showed differences in oleoresin composition and a slightly different antimicrobial capacity against clinical isolates. CONCLUSIONS: It was demonstrated that SFE is an efficient technology for extracting L. graveolens oleoresins. Additionally, the solvent-free extraction method and the observed antimicrobial effect increase the applications of these oleoresins in fields, such as cosmetics, food industry, medicine, amongst others.


Subject(s)
Anti-Infective Agents , Lippia , Oils, Volatile , Anti-Bacterial Agents/pharmacology , Anti-Infective Agents/pharmacology , Drug Resistance, Multiple , Enterococcus faecalis , Microbial Sensitivity Tests , Oils, Volatile/pharmacology , Plant Extracts , Staphylococcus aureus
6.
Ultrason Sonochem ; 77: 105680, 2021 Sep.
Article in English | MEDLINE | ID: mdl-34365154

ABSTRACT

The present study optimised the ultrasound-assisted extraction (UAE) of bioactive compounds from Amaranthus hypochondriacus var. Nutrisol. Influence of temperature (25.86-54.14 °C) and ultrasonic power densities (UPD) (76.01-273.99 mW/mL) on total betalains (BT), betacyanins (BC), betaxanthins (BX), total polyphenols (TP), antioxidant activity (AA), colour parameters (L*, a*, and b*), amaranthine (A), and isoamaranthine (IA) were evaluated using response surface methodology. Moreover, betalain extraction kinetics and mass transfer coefficients (KLa) were determined for each experimental condition. BT, BC, BX, TP, AA, b*, KLa, and A were significantly affected (p < 0.05) by temperature extraction and UPD, whereas L*, a*, and IA were only affected (p < 0.05) by temperature. All response models were significantly validated with regression coefficients (R2) ranging from 87.46 to 99.29%. BT, A, IA, and KLa in UAE were 1.38, 1.65, 1.50, and 29.93 times higher than determined using conventional extraction, respectively. Optimal UAE conditions were obtained at 41.80 °C and 188.84 mW/mL using the desired function methodology. Under these conditions, the experimental values for BC, BX, BT, TP, AA, L*, a*, b*, KLa, A, and IA were closely related to the predicted values, indicating the suitability of the developed quadratic models. This study proposes a simple and efficient UAE method to obtain betalains and polyphenols with high antioxidant activity, which can be used in several applications within the food industry.


Subject(s)
Amaranthus/chemistry , Antioxidants/isolation & purification , Betalains/isolation & purification , Chemical Fractionation/methods , Polyphenols/isolation & purification , Ultrasonic Waves , Time Factors
7.
J Photochem Photobiol B ; 220: 112210, 2021 Jul.
Article in English | MEDLINE | ID: mdl-34000487

ABSTRACT

Amaranths are recognized by their high nutritive value and their natural tolerance to environmental stresses. In this study, physiological differences in response to water stress were compared between A. hybridus, a wild species considered as weed, and A. hypochondriacus, the most cultivated species for grain production, under the hypothesis that wild species have better adaptation to stress. In both species, photosynthetic parameters, pigments, and gene expression of selected genes were assessed. Biomass, effective quantum efficiency (ΦPSII), photochemical quenching (qP), and electron transport rate (ETR) values were reduced only in A. hybridus due to water deficit. Drought stress promoted proline accumulation by twice in A. hybridus but until three times in A. hypochondriacus. In both species, drought stress reduced net assimilation rate (A), transpiration rate (E), stomatal conductance (gs), and the expression of phosphoenol pyruvate carboxylase (PEPC). While, maximum quantum efficiency (Fv/Fm), chlorophyll, betacyanins, and the expression of ribulose1-5, bisphosphate carboxylase/oxygenase large subunit (LSU) did not change when plants were subjected to water stress. Likewise, both species accumulated total phenolic compounds and Oxalyl-CoA gene was up-regulated in response to drought. Our results have shown that A. hypochondriacus, the cultivated species, exhibited better tolerance to drought than A. hybridus, the wild species, probably due to an unconsciously selected trait during the domestication process.


Subject(s)
Amaranthus/metabolism , Biomass , Chlorophyll/metabolism , Droughts , Osmoregulation , Stress, Physiological , Acyl Coenzyme A/genetics , Amaranthus/genetics , Amaranthus/physiology , Down-Regulation , Fluorescence , Genes, Plant , Phosphoenolpyruvate Carboxykinase (ATP)/genetics , Photosynthesis
8.
J Contam Hydrol ; 234: 103657, 2020 Oct.
Article in English | MEDLINE | ID: mdl-32777591

ABSTRACT

Groundwater-N pollution derives from agricultural and urban activities, and compromises water quality in shallow aquifers, putting human and environmental health at risk. Nonetheless, subsurface microbiota can transform dissolved inorganic nitrogen into N2. In this study, we surveyed the microbial community of a shallow aquifer by sampling one well, one piezometer and a spring within an agricultural area that receives N-inputs of more than 700 kg/ha per year through irrigation with wastewater. The survey was conducted during a year with a 16S rRNA next-gen approach. In parallel, we quantified the number of gene copies and transcripts related to anaerobic ammonium oxidation (anammox, hzo), nitrite-dependent anaerobic methane oxidation (n-damo, nod and pmoA) and nitrous oxide reduction (last step of denitrification, nosZ), during the dry and rainy seasons. Our results showed that the groundwater samples had 17.7 to 22.5 mg/L of NO3--N. The bacterial and archaeal community structure was distinctive at each site, and it remained relatively stable over time. We verified the co-occurrence of N-transforming bacteria, which was correlated with the concentration of NO2-/NO3- and ORP/DO values (DO: ~3.0 mg/L). Our analyses suggest that these conditions may allow the presence of nitrifying microorganisms which can couple with anammox, n-damo and denitrifying bacteria in interrelated biogeochemical pathways. Gene density (as the number of gene copies per litre) was lower in the rainy season than in the dry season, possibly due to dilution by rainwater infiltration. Yet, the numbers of hzo gene copies here found were similar to those reported in oceanic oxygen minimum zones and in a carbonate-rock aquifer. The transcript sequences showed that Candidatus Brocadia spp. (anammox), Candidatus Methylomirabilis spp. (n-damo) and autotrophic denitrifying Betaproteobacteria coexist in the groundwater environment, with the potential to attenuate the concentration of dissolved inorganic nitrogen by reducing it to N2 rather than N2O; delivering thus, an important ecosystem service to remove contaminants.


Subject(s)
Ammonium Compounds , Groundwater , Microbiota , Anaerobiosis , Bacteria/genetics , Denitrification , Humans , Methane , Nitrates , Nitrous Oxide , Oxidation-Reduction , RNA, Ribosomal, 16S/genetics
9.
Br J Radiol ; 93(1109): 20190462, 2020 May 01.
Article in English | MEDLINE | ID: mdl-32045282

ABSTRACT

OBJECTIVES: To evaluate coronary artery calcification (CAC) on routine CT chest in hospitalised HIV patients and to assess individual risk factors. METHODS: Routine CT chests, May 2010-November 2015, of 143 hospitalised HIV-positive patients were reviewed for qualitative assessment of calcification in major coronary arteries by two radiologists. Presence, location and burden of calcification were evaluated on 3 mm axial images of CT chest. Cardiovascular risk factors and HIV lab parameters such as CD4 count, viral load and duration, and status of antiretroviral treatment were collected. Statistical analysis including multivariate logistic regression was performed. RESULTS: Forty-one patients (28.7%) showed CAC, left anterior descending (n = 38, 92.7%), circumflex (n = 18, 43.9%) and Right Coronary Artery (n = 13, 31.7%); mostly mild CAC burden and mostly proximal left coronary arteries with excellent interobserver and intraobserver agreements (K = 0.9, and 1). Age of CAC+ group (53.9 years) was significantly higher than CAC- group (43.4, p < 0.001, minimum age of CAC+, 27 years). No significant difference between two groups in sex, ethnicity and risk factors and HAART status. CAC+ group showed significantly longer HIV duration (12.3 years vs 8.6, p < 0.0344) and higher CD4 cell counts (mean = 355.9 vs 175.3, p = 0.0053) and significantly lower viral load (76 vs 414K, p = 0.02) than CAC- group. On multivariate logistic regression, age, HIV duration and CD4 were significantly associated with CAC+ (p-values < .05). CONCLUSIONS: One-third of hospitalised HIV patients showed subclinical CAC on CT chest. HIV duration and age of patients were independent risk factors for developing CAC. Higher CD4 cell count was strongly associated with CAC+. ADVANCES IN KNOWLEDGE: Routine CT chest with or without contrast performed for non-cardiac indications is helpful in identification of subclinical CAC in HIV patients and radiologists should be encouraged to report CAC.CAC is seen in younger age group in HIV, and awareness of this finding on routine CT chest would help guiding clinicians to assess risk stratification for primary prevention of ischemic heart disease in this population at an earlier stage when compared to normal population.Duration of HIV infection and age of patients were independent risk factors for developing CAC in our study and CD4 count was strongly associated with presence of CAC.


Subject(s)
Coronary Artery Disease/diagnostic imaging , HIV Infections/complications , Vascular Calcification/diagnostic imaging , Adult , Computed Tomography Angiography/methods , Coronary Angiography/methods , Coronary Artery Disease/complications , Coronary Vessels/diagnostic imaging , Early Diagnosis , Female , Hospitalization , Humans , Male , Middle Aged , Retrospective Studies , Tomography, X-Ray Computed , Vascular Calcification/complications
10.
Ambio ; 49(10): 1612-1628, 2020 Oct.
Article in English | MEDLINE | ID: mdl-31994028

ABSTRACT

This study aimed to investigate the environmental impacts generated by the hydroelectric complex in the Madeira River, Brazilian Amazon, based on the perceptions of local fishers and fishery database, it focus attention on three main impacts: (i) on local fishery stocks; (ii) in fish fauna and (iii) on the aquatic ecosystems. The local fishers were selected through the "snowball" approach for the application of semi-structured interviews. All the local fishers confirmed having perceived a decline in fishery productivity following the impounding of the Madeira River. Changes in the condition of the fish were also perceived by the local fishers, including exophthalmia (82%), a reduction in the weight or length of the fish (25%), and irregular breeding patterns (14%). In the case of impacts on the river, changes in the hydrological cycle were the process remembered most frequently (75%). The results elucidated a range of environmental impacts caused by the hydroelectric dams of the Madeira River.


Subject(s)
Ecosystem , Rivers , Animals , Brazil , Fisheries , Fishes
11.
Educ. med. (Ed. impr.) ; 20(3): 140-145, mayo-jun. 2019. ilus, tab
Article in Spanish | IBECS | ID: ibc-191565

ABSTRACT

INTRODUCCIÓN: Uno de los principales retos en educación médica se encuentra en ofrecer una evaluación confiable, precisa, objetiva y auténtica. Particularmente la evaluación de competencias interpersonales, la presencia de múltiples evaluadores favorece la percepción de estos principios por parte del estudiante evaluado. El objetivo de esta investigación fue diseñar un modelo de evaluación innovador, que integre como elementos distintivos el uso de tecnología inmersiva, una estandarización de instrumentos de evaluación, integración de múltiples evaluadores y la posibilidad realizar una valoración remota en tiempo real o diferido. MATERIAL Y MÉTODOS: Se realizó un estudio cuantitativo, descriptivo y transversal con una muestra de 51 estudiantes del segundo año de la carrera de medicina de una universidad mexicana. Participaron en la simulación de un caso clínico con un paciente estandarizado, siendo evaluados de forma presencial y remota por 15 profesores de 3 diferentes universidades. Se utilizó estadística descriptiva para valorar las tendencias por cada elemento incluido. RESULTADOS: Los resultados más favorables se encuentran en el momento del inicio del encuentro con una media de 1,364, siendo más alto particularmente en los elementos de formalidad, con media de 1,636 y modales con media de 1,400. El desempeño menos favorable se encontró durante el encuentro, con media de 0,856, siendo de especial interés el demostrado durante la exploración con media de 0,818. DISCUSIÓN: El uso de tecnologías inmersivas permite hacer una evaluación confiable, precisa, objetiva y auténtica a través de la estandarización de instrumentos de evaluación, con la posibilidad de integrar múltiples evaluadores de forma presencial y a distancia. Esta iniciativa permitió una colaboración interinstitucional para el análisis de los estándares del currículo, a través de distintas regiones geográficas y culturas


INTRODUCTION: One of the main challenges in medical education is to offer an assessment that is reliable, accurate, objective, and authentic. Particularly in interpersonal skills, and having multiple observers, it benefits the student's perception of these principles. The aim of this project was to design and implement an assessment model that integrates the distinctive elements of the use of immersive technology, standardisation of evaluation tools, multiple observers, and remote assessment. MATERIAL AND METHODS: A quantitative, descriptive and cross-sectional study was conducted with a sample of 51 second year medical students from a Mexican university. They participated in the simulation of a clinical case with a standardised patient, being assessed by 15 teachers from 3 different universities. Descriptive statistics were used to assess trends for each measurement included in the study. RESULTS: The best results were obtained at the beginning of the medical encounter, with a mean of 1.364. The elements that were particularly high were formality with a mean of 1.636, and manners with 0.856. The least favourable results were obtained during the encounter, the one obtained in the physical examination being of particular interest, with a mean of 0.818. DISCUSSION: The use of immersive technologies helps to provide a reliable, accurate, objective, and authentic evaluation through the standardisation of the evaluation tools, with the possibility of the integration of multi-assessors on site, or remotely. This initiative led to an inter-institutional collaboration for the analysis of curriculum standards across different geographic regions and cultures


Subject(s)
Humans , Male , Adult , Models, Educational , Educational Measurement/methods , Technology/education , Education, Premedical/methods , Education, Distance , Cross-Sectional Studies , Students, Premedical/statistics & numerical data
12.
Educ. med. (Ed. impr.) ; 20(supl.1): 3-9, mar. 2019. ilus, tab
Article in Spanish | IBECS | ID: ibc-191884

ABSTRACT

INTRODUCCIÓN: La incorporación de tecnología educativa puede aportar numerosos beneficios en el aprendizaje, no obstante frecuentemente se realiza sin reflexionar sobre la capacidad de la institución educativa para adoptar estos cambios. Esto ocasiona que los proyectos se queden inconclusos, desperdicio de recursos económicos y profesores desmotivados. El objetivo de esta investigación fue diseñar y validar un modelo que integre los factores que facilitan la adopción de tecnología educativa en escuelas de medicina. MATERIAL Y MÉTODOS: El método empleado es cuantitativo y descriptivo. Se contó con una muestra de 15 profesores de ciencias de la salud para estudiar la validez del modelo, en el que se les pidió que catalogaran el nivel en que se encontraba la organización a la que están adscritos. Se estimó la consistencia interna del instrumento con análisis de ítem. Se utilizó estadística descriptiva para valorar las tendencias por cada uno de los factores propuestos. RESULTADOS: Los reactivos resultaron homogéneos y válidos. En el análisis ítem, se obtuvo un coeficiente de alfa de Cronbach de 0,938. Las respuestas más favorables se obtuvieron en el factor de planeación organizacional con una media de 3,23. DISCUSIÓN: Se cataloga la escuela en estudio en un nivel de inicio, aunque en algunos criterios alcanza el nivel de vinculado. Para estar preparada para nuevos retos en adopción de tecnología educativa necesita incrementar la presencia institucional en foros nacionales mediante la difusión de sus propuestas de innovación, así como la vinculación con pares para la propuesta de proyectos interinstitucionales


INTRODUCTION: Although the incorporation of technology brings numerous benefits into learning, this is usually done without considering the capacity of the institution to deal with these changes. This leads to unfinished projects, wasted resources, and unmotivated teachers. The objective of this study was to design and validate a model that integrates the factors that enable the adoption of educational technology into schools of medicine. MATERIAL AND METHODS: The methodology employed is quantitative and descriptive. A sample of 15 health science faculties participated in order to study the model's validity, using a questionnaire in which they were asked to catalogue the level of their organisation. The internal consistency of the tool was studied using item analysis. Descriptive statistics were used to assess trends by each factor. RESULTS: The items are homogeneous and valid. In item analysis, a Cronbach alpha coefficient of 0.938 was obtained. The most favourable responses were obtained in the organisational planning factor with an average of 3.23. DISCUSSION: The institution where the study was conducted is catalogued at a Start level, although in some factors it reaches the Connected level. In order for it to be prepared for the new challenges in educational technology adoption, the organisation needs to increase institutional presence on national forums through the dissemination of its innovation proposals, as well as the relationship with their peers for the proposal of inter-institutional projects


Subject(s)
Humans , Educational Technology/methods , Models, Educational , Schools, Medical/organization & administration , Diffusion of Innovation , Educational Technology/trends , Organizational Innovation , Competency-Based Education/organization & administration , Information Systems
13.
BMC Plant Biol ; 19(1): 59, 2019 Feb 06.
Article in English | MEDLINE | ID: mdl-30727945

ABSTRACT

BACKGROUND: Amaranth is a plant naturally resistant to various types of stresses that produces seeds of excellent nutritional quality, so amaranth is a promising system for food production. Amaranth wild relatives have survived climate changes and grow under harsh conditions, however no studies about morphological and molecular characteristics of their seeds are known. Therefore, we carried out a detailed morphological and molecular characterization of wild species A. powellii and A. hybridus, and compared them with the cultivated amaranth species A. hypochondriacus (waxy and non-waxy seeds) and A. cruentus. RESULTS: Seed proteins were fractionated according to their polarity properties and were analysed in one-dimensional gel electrophoresis (1-DE) followed by nano-liquid chromatography coupled to tandem mass spectrometry (nLC-MS/MS). A total of 34 differentially accumulated protein bands were detected and 105 proteins were successfully identified. Late embryogenesis abundant proteins were detected as species-specific. Oleosins and oil bodies associated proteins were observed preferentially in A. cruentus. Different isoforms of the granule-bound starch synthase I, and several paralogs of 7S and 11S globulins were also identified. The in silico structural analysis from different isoforms of 11S globulins was carried out, including new types of 11S globulin not reported so far. CONCLUSIONS: The results provide novel information about 11S globulins and proteins related in seed protection, which could play important roles in the nutritional value and adaptive tolerance to stress in amaranth species.


Subject(s)
Amaranthus/metabolism , Plant Proteins/metabolism , Seeds/metabolism , Chromatography, Liquid , Electrophoresis , Globulins/analysis , Globulins/isolation & purification , Globulins/metabolism , Plant Proteins/analysis , Plant Proteins/isolation & purification , Seeds/chemistry , Tandem Mass Spectrometry
14.
J Vasc Interv Radiol ; 29(5): 706-713, 2018 05.
Article in English | MEDLINE | ID: mdl-29551544

ABSTRACT

Radiogenomics involves the integration of mineable data from imaging phenotypes with genomic and clinical data to establish predictive models using machine learning. As a noninvasive surrogate for a tumor's in vivo genetic profile, radiogenomics may potentially provide data for patient treatment stratification. Radiogenomics may also supersede the shortcomings associated with genomic research, such as the limited availability of high-quality tissue and restricted sampling of tumoral subpopulations. Interventional radiologists are well suited to circumvent these obstacles through advancements in image-guided tissue biopsies and intraprocedural imaging. Comprehensive understanding of the radiogenomic process is crucial for interventional radiologists to contribute to this evolving field.


Subject(s)
Genomics/methods , Neoplasms/genetics , Neoplasms/radiotherapy , Radiography, Interventional , Biomarkers, Tumor/genetics , Data Mining , Genetic Markers , Genetic Predisposition to Disease , Humans , Machine Learning , Phenotype
15.
Planta ; 245(3): 623-640, 2017 Mar.
Article in English | MEDLINE | ID: mdl-27988887

ABSTRACT

MAIN CONCLUSION: An amaranth DGR gene, induced under abiotic stress, modifies cell wall structure and causes hypersensitivity to ABA and salt when overexpressed in Arabidopsis. DUF642 is a highly conserved plant-specific family of unknown cell wall-associated proteins. The AhDGR2 gene, coding for a DUF642 protein, was significantly induced in grain amaranth (Amaranthus hypochondriacus) plants subjected to water-deficit and salinity stress, thereby suggesting its participation in abiotic stress tolerance in this plant. A role in development was also inferred from the higher AhDGR2 expression rates detected in young tissues. Subsequent overexpression of AhDGR2 in transgenic Arabidopsis plants (OE-AhDGR2) supported its possible role in development processes. Thus, OE-AhDGR2 plants generated significantly longer roots when grown in normal MS medium. However, they showed a hypersensitivity to increasing concentrations of abscisic acid or NaCl in the medium, as manifested by shorter root length, smaller and slightly chlorotic rosettes, as well as highly reduced germination rates. Contrary to expectations, OE-AhDGR2 plants were intolerant to abiotic stress. Moreover, cell walls in transgenic plants were thinner, in leaves, and more disorganized, in roots, and had significantly modified pectin levels. Lower pectin methylesterase activity detected in leaves of OE-AhDGR2 plants, but not in roots, was contrary to previous reports associating DUF642 proteins and decreased pectin esterification levels in cell walls. Nonetheless, microarray data identified candidate genes whose expression levels explained the phenotypes observed in leaves of OE-AhDGR2 plants, including several involved in cell wall integrity and extension, growth and development, and resistance to abiotic stress. These results support the role of DUF642 proteins in cell wall-related processes and offer novel insights into their possible role(s) in plants.


Subject(s)
Abscisic Acid/pharmacology , Amaranthaceae/genetics , Arabidopsis/physiology , Cell Wall/metabolism , Plant Proteins/genetics , Sodium Chloride/pharmacology , Stress, Physiological/genetics , Arabidopsis/drug effects , Arabidopsis/genetics , Down-Regulation/drug effects , Down-Regulation/genetics , Gene Expression Regulation, Plant/drug effects , Genes, Plant , Oligonucleotide Array Sequence Analysis , Phylogeny , Plant Leaves/drug effects , Plant Leaves/metabolism , Plant Proteins/metabolism , Plant Roots/drug effects , Plant Roots/growth & development , Plant Roots/metabolism , Plants, Genetically Modified , Seeds/drug effects , Seeds/growth & development , Sequence Analysis, DNA , Stress, Physiological/drug effects , Up-Regulation/drug effects , Up-Regulation/genetics
16.
PLoS One ; 11(10): e0164280, 2016.
Article in English | MEDLINE | ID: mdl-27749893

ABSTRACT

Two grain amaranth transcription factor (TF) genes were overexpressed in Arabidopsis plants. The first, coding for a group VII ethylene response factor TF (i.e., AhERF-VII) conferred tolerance to water-deficit stress (WS) in transgenic Arabidopsis without affecting vegetative or reproductive growth. A significantly lower water-loss rate in detached leaves coupled to a reduced stomatal opening in leaves of plants subjected to WS was associated with this trait. WS tolerance was also associated with an increased antioxidant enzyme activity and the accumulation of putative stress-related secondary metabolites. However, microarray and GO data did not indicate an obvious correlation between WS tolerance, stomatal closure, and abscisic acid (ABA)-related signaling. This scenario suggested that stomatal closure during WS in these plants involved ABA-independent mechanisms, possibly involving reactive oxygen species (ROS). WS tolerance may have also involved other protective processes, such as those employed for methyl glyoxal detoxification. The second, coding for a class A and cluster I DNA binding with one finger TF (i.e., AhDof-AI) provided salt-stress (SS) tolerance with no evident fitness penalties. The lack of an obvious development-related phenotype contrasted with microarray and GO data showing an enrichment of categories and genes related to developmental processes, particularly flowering. SS tolerance also correlated with increased superoxide dismutase activity but not with augmented stomatal closure. Additionally, microarray and GO data indicated that, contrary to AhERF-VII, SS tolerance conferred by AhDof-AI in Arabidopsis involved ABA-dependent and ABA-independent stress amelioration mechanisms.


Subject(s)
Amaranthus/metabolism , Arabidopsis/metabolism , DNA-Binding Proteins/metabolism , Plant Proteins/metabolism , Transcription Factors/metabolism , Amino Acid Sequence , Antioxidants/metabolism , DNA-Binding Proteins/classification , DNA-Binding Proteins/genetics , Droughts , Gene Expression Regulation, Plant/drug effects , Molecular Sequence Data , Oligonucleotide Array Sequence Analysis , Phylogeny , Plant Growth Regulators/pharmacology , Plant Proteins/classification , Plant Proteins/genetics , Plant Stomata/physiology , Plants, Genetically Modified/metabolism , Pyruvaldehyde/toxicity , Reactive Oxygen Species/metabolism , Salt Tolerance , Sequence Alignment , Signal Transduction/drug effects , Sodium Chloride/pharmacology , Stress, Physiological/drug effects , Superoxide Dismutase/metabolism , Transcription Factors/classification , Transcription Factors/genetics
17.
Abdom Radiol (NY) ; 41(6): 1178-86, 2016 06.
Article in English | MEDLINE | ID: mdl-26934892

ABSTRACT

Stress urinary incontinence (SUI) is a condition in which the weakness of the pelvic floor muscles causes unintentional loss of urine. For patients who are unable to achieve symptomatic improvement from lifestyle modification and pharmacotherapy, surgical placement of the pelvic slings or the use of urethral bulking agents has been shown to provide tremendous symptomatic improvement. Learning to recognize the pelvic slings and to identify their complications on imaging is invaluable; however, this is challenging because of the change in the local anatomy after surgical placement of the sling. In this paper, we present CT and MR imaging to demonstrate the surgical and non-surgical treatments of female SUI and their complications. Through this pictorial essay, our goal is to familiarize radiologists with recognizing the various forms of treatment for SUIs, the relevant pelvic anatomy, and complications that may occur secondary to the surgical placement of the pelvic slings.


Subject(s)
Magnetic Resonance Imaging/methods , Tomography, X-Ray Computed/methods , Urinary Incontinence, Stress/diagnostic imaging , Urologic Surgical Procedures , Female , Humans , Postoperative Complications , Suburethral Slings , Urinary Incontinence, Stress/surgery
18.
Chemphyschem ; 15(18): 4042-8, 2014 Dec 15.
Article in English | MEDLINE | ID: mdl-25257619

ABSTRACT

The interaction of H2 and O2 molecules in the presence of nitrogen-doped graphene decorated with either a palladium or gold atom was investigated by using density functional theory. It was found that two hydrogen molecules were adsorbed on the palladium atom. The interaction of these adsorbed hydrogen molecules with two oxygen molecules generates two hydrogen peroxide molecules first through a Eley-Rideal mechanism and then through a Langmuir-Hinshelwood mechanism. The barrier energies for this reaction were small; therefore, we expect that this process may occur spontaneously at room temperature. In the case of gold, a single hydrogen molecule is adsorbed and dissociated on the metal atom. The interaction of the dissociated hydrogen molecule on the surface with one oxygen molecule generates a water molecule. The competitive adsorption between oxygen and hydrogen molecules slightly favors oxygen adsorption.


Subject(s)
Gold/chemistry , Graphite/chemistry , Hydrogen/chemistry , Nitrogen/chemistry , Oxygen/chemistry , Palladium/chemistry , Adsorption , Models, Chemical , Models, Molecular , Pyridines/chemistry , Surface Properties
19.
J Proteome Res ; 13(8): 3607-27, 2014 Aug 01.
Article in English | MEDLINE | ID: mdl-24942474

ABSTRACT

Salt stress is one of the major factors limiting crop productivity worldwide. Amaranth is a highly nutritious pseudocereal with remarkable nutraceutical properties; it is also a stress-tolerant plant, making it an alternative crop for sustainable food production in semiarid conditions. A two-dimensional electrophoresis gel coupled with a liquid chromatography-mass spectrometry/mass spectrometry (LC-MS/MS) approach was applied in order to analyze the changes in amaranth root protein accumulation in plants subjected to salt stress under hydroponic conditions during the osmotic phase (1 h), after recovery (24 h), and during the ionic phase of salt stress (168 h). A total of 101 protein spots were differentially accumulated in response to stress, in which 77 were successfully identified by LC-MS/MS and a database search against public and amaranth transcriptome databases. The resulting proteins were grouped into different categories of biological processes according to Gene Ontology. The identification of several protein isoforms with a change in pI and/or molecular weight reveals the importance of the salt-stress-induced posttranslational modifications in stress tolerance. Interestingly stress-responsive proteins unique to amaranth, for example, Ah24, were identified. Amaranth is a stress-tolerant alternative crop for sustainable food production, and the understanding of amaranth's stress tolerance mechanisms will provide valuable input to improve stress tolerance of other crop plants.


Subject(s)
Amaranthus/metabolism , Gene Expression Regulation, Plant/physiology , Plant Proteins/metabolism , Plant Roots/metabolism , Salinity , Stress, Physiological/physiology , Agriculture/methods , Amaranthus/genetics , Chromatography, Liquid , Electrophoresis, Gel, Two-Dimensional , Gene Expression Regulation, Plant/genetics , Gene Ontology , Plant Roots/genetics , Protein Isoforms/genetics , Protein Isoforms/metabolism , Protein Processing, Post-Translational/genetics , Tandem Mass Spectrometry
20.
PLoS One ; 8(7): e67879, 2013.
Article in English | MEDLINE | ID: mdl-23861825

ABSTRACT

Tolerance to defoliation can be defined as the degree to which productivity is affected by photosynthetic area reduction. This trait was studied in grain amaranth (Amaranthus cruentus and A. hypochondriacus), which are considered to be a highly defoliation-tolerant species. The physiological and biochemical responses to increasing levels of mechanical leaf removal up to total defoliation were quantified. Tolerance appeared to be dependent on various factors: ( i) amount of lost tissue; (ii) mechanics of leaf tissue removal; (iii) environment, and (iv) species tested. Thus, grain amaranth was found to be a highly tolerant species under green-house conditions when leaf tissue loss was performed by gradual perforation. However, tolerance was compromised under similar conditions when defoliation was done by gradual cutting of the leaf. Also tolerance in completely defoliated plants tended to decrease under field conditions, where differences between A. cruentus and A. hypochondriacus were observed. All non-structural carbohydrate (NSC) levels were reduced in stems and roots of totally defoliated amaranths one day after treatment. Such depletion probably provided the carbon (C) resources needed to sustain the early recovery process in the absence of photosynthetic capacity. This was corroborated by shading of intact plants, which produced the same rapid and drastic reduction of NSC levels in these tissues. These results emphasize the role of stored NSCs, particularly starch, in buffering the impact of severe defoliation in amaranth. The fall in sucrose synthase and cell wall invertase activity observed in stems and roots soon after defoliation was consistent with their predicted shift from sink to source tissues. It is concluded that mobilization of C stores in stems and roots, is a physiologically important trait underlying tolerance to defoliation in grain amaranth.


Subject(s)
Amaranthus/physiology , Glucosyltransferases/biosynthesis , Plant Leaves/physiology , Plant Proteins/biosynthesis , beta-Fructofuranosidase/biosynthesis , Amaranthus/chemistry , Carbon/metabolism , Photosynthesis , Plant Leaves/chemistry , Plant Roots/chemistry , Plant Roots/metabolism , Plant Stems/chemistry , Plant Stems/metabolism , Species Specificity , Starch/metabolism , Stress, Physiological
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