Simplified homology-assisted CRISPR for gene editing in Drosophila.

In vivo genome editing with clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9 generates powerful tools to study gene regulation and function. We revised the homology-assisted CRISPR knock-in method to convert Drosophila GAL4 lines to LexA lines using a new universal knock-in donor strain. A balancer chromosome-linked donor strain with both body color (yellow) and eye red fluorescent protein (RFP) expression markers simplified the identification of LexA knock-in using light or fluorescence microscopy. A second balancer chromosome-linked donor strain readily converted the second chromosome-linked GAL4 lines regardless of target location in the cis-chromosome but showed limited success for the third chromosome-linked GAL4 lines. We observed a consistent and robust expression of the yellow transgene in progeny harboring a LexA knock-in at diverse genomic locations. Unexpectedly, the expression of the 3xP3-RFP transgene in the "dual transgene" cassette was significantly increased compared with that of the original single 3xP3-RFP transgene cassette in all tested genomic locations. Using this improved screening approach, we generated 16 novel LexA lines; tissue expression by the derived LexA and originating GAL4 lines was similar or indistinguishable. In collaboration with 2 secondary school classes, we also established a systematic workflow to generate a collection of LexA lines from frequently used GAL4 lines.

Transgenic Drosophila lines for LexA-dependent gene and growth regulation.

Conditional expression of short hairpin RNAs with binary genetic systems is an indispensable tool for studying gene function. Addressing mechanisms underlying cell-cell communication in vivo benefits from simultaneous use of 2 independent gene expression systems. To complement the abundance of existing Gal4/UAS-based resources in Drosophila, we and others have developed LexA/LexAop-based genetic tools. Here, we describe experimental and pedagogical advances that promote the efficient conversion of Drosophila Gal4 lines to LexA lines, and the generation of LexAop-short hairpin RNA lines to suppress gene function. We developed a CRISPR/Cas9-based knock-in system to replace Gal4 coding sequences with LexA, and a LexAop-based short hairpin RNA expression vector to achieve short hairpin RNA-mediated gene silencing. We demonstrate the use of these approaches to achieve targeted genetic loss-of-function in multiple tissues. We also detail our development of secondary school curricula that enable students to create transgenic flies, thereby magnifying the production of well-characterized LexA/LexAop lines for the scientific community. The genetic tools and teaching methods presented here provide LexA/LexAop resources that complement existing resources to study intercellular communication coordinating metazoan physiology and development.

A Drosophila LexA Enhancer-Trap Resource for Developmental Biology and Neuroendocrine Research.

Novel binary gene expression tools like the LexA-LexAop system could powerfully enhance studies of metabolism, development, and neurobiology in Drosophila However, specific LexA drivers for neuroendocrine cells and many other developmentally relevant systems remain limited. In a unique high school biology course, we generated a LexA-based enhancer trap collection by transposon mobilization. The initial collection provides a source of novel LexA-based elements that permit targeted gene expression in the corpora cardiaca, cells central for metabolic homeostasis, and other neuroendocrine cell types. The collection further contains specific LexA drivers for stem cells and other enteric cells in the gut, and other developmentally relevant tissue types. We provide detailed analysis of nearly 100 new LexA lines, including molecular mapping of insertions, description of enhancer-driven reporter expression in larval tissues, and adult neuroendocrine cells, comparison with established enhancer trap collections and tissue specific RNAseq. Generation of this open-resource LexA collection facilitates neuroendocrine and developmental biology investigations, and shows how empowering secondary school science can achieve research and educational goals.

Mating system instability in Schiedea menziesii (Caryophyllaceae).

We investigated inbreeding depression and selfing in hermaphroditic Schiedea menziesii to assess the stability of the breeding system. A combination of high selfing rates and strong inbreeding depression suggests that the mating system is unstable. The population-level selfing rate measured in three years ranged considerably from 0.425 (SE = 0.138) to 0.704 (0.048); family measures of selfing rate varied from zero to one in all three years. Inbreeding coefficients did not differ from zero, suggesting that inbred plants do not survive to reproduction in the field. Average inbreeding depression measured in two greenhouse experiments was 0.608-0.870, with values for individual plants ranging from -0.170 to 0.940. The magnitude of inbreeding depression expressed at different life-history stages depended on experimental conditions. When plants were grown during the winter, inbreeding depression was expressed at early and late life-history stages. When plants were grown during the summer, inbreeding depression was detected for germination but not for later life-history stages. Inbreeding depression for vegetative and inflorescence biomass was also measured using field-collected seeds where cross status was assigned using genotypes determined electrophoretically. We did not detect a relation between inbreeding depression and the selfing rate at the level of the individual plant. We saw no evidence for intrafloral selfing, suggesting that the evolution of increased selfing through autogamy is unlikely, despite high selfing rates. A more likely outcome of breeding system instability is the evolution of gynodioecy, which occurs in species of Schiedea closely related to S. menziesii. Females have been detected in progeny of S. menziesii that have been raised in the greenhouse. In the absence of biotic pollen vectors, the failure of these females to establish in the natural population may result from the absence of adaptations for wind pollination.