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1.
Sci Rep ; 14(1): 5538, 2024 Mar 06.
Article in English | MEDLINE | ID: mdl-38448554

ABSTRACT

Globally, food production for an ever-growing population is a well-known threat to the environment due to losses of excess reactive nitrogen (N) from agriculture. Since the 1980s, many countries of the Global North, such as Denmark, have successfully combatted N pollution in the aquatic environment by regulation and introduction of national agricultural one-size-fits-all mitigation measures. Despite this success, further reduction of the N load is required to meet the EU water directives demands, and implementation of additional targeted N regulation of agriculture has scientifically and politically been found to be a way forward. In this paper, we present a comprehensive concept to make future targeted N regulation successful environmentally and economically. The concept focus is on how and where to establish detailed maps of the groundwater denitrification potential (N retention) in areas, such as Denmark, covered by Quaternary deposits. Quaternary deposits are abundant in many parts of the world, and often feature very complex geological and geochemical architectures. We show that this subsurface complexity results in large local differences in groundwater N retention. Prioritization of the most complex areas for implementation of the new concept can be a cost-efficient way to achieve lower N impact on the aquatic environment.

2.
Endocrinol Diabetes Metab ; 7(1): e463, 2024 Jan.
Article in English | MEDLINE | ID: mdl-38059537

ABSTRACT

OBJECTIVE: The mechanisms behind the diminished incretin effect in type 2 diabetes are uncertain, but impaired vagal transmission has been suggested. We aimed to investigate the association between the incretin effect and autonomic neuropathy, and the degree of dysglycaemia and duration of diabetes. DESIGN AND METHODS: For a cross-sectional study, we included participants with either longstanding type 2 diabetes, recent onset, untreated diabetes and controls without diabetes matched for age, sex and body mass index. Autonomic nerve function was assessed with cardiovascular reflex tests, heart rate variability and sudomotor function. Visceral afferent nerves in the gut were tested performing rapid rectal balloon distention. An oral glucose tolerance test and an intravenous isoglycaemic glucose infusion were performed to calculate the incretin effect and gastrointestinal-mediated glucose disposal (GIGD). RESULTS: Sixty-five participants were recruited. Participants with diabetes had rectal hyposensitivity for earliest sensation (3.7 ± 1.1 kPa in longstanding, 4.0 ± 1.3 in early), compared to controls (3.0 ± 0.9 kPa), p = .005. Rectal hyposensitivity for earliest sensation was not associated with the incretin effect (rho = -0.204, p = .106), but an association was found with GIGD (rho -0.341, p = .005). Incretin effect and GIGD were correlated with all glucose values, HbA1c and duration of diabetes. CONCLUSIONS: Rectal hyposensitivity was uncovered in both longstanding and early type 2 diabetes, and was not associated with the incretin effect, but with GIGD, implying a potential link between visceral neuropathy and gastrointestinal handling of glucose. Both the incretin effect and GIGD were associated with the degree of dysglycaemia and the duration of diabetes. PREVIOUSLY PUBLISHED: Some of the data have previously been published and presented as a poster on the American Diabetes Association 83rd Scientific Sessions: Meling et al; 1658-P: Rectal Hyposensitivity, a Potential Marker of Enteric Autonomic Nerve Dysfunction, Is Significantly Associated with Gastrointestinally Mediated Glucose Disposal in Persons with Type 2 Diabetes. Diabetes 20 June 2023; 72 (Supplement_1): 1658-P. https://doi.org/10.2337/db23-1658-P.


Subject(s)
Diabetes Mellitus, Type 2 , Incretins , Humans , Incretins/physiology , Glucose , Glucagon-Like Peptide 1 , Diabetes Mellitus, Type 2/complications , Blood Glucose , Cross-Sectional Studies , Insulin
3.
J Dairy Sci ; 107(3): 1510-1522, 2024 Mar.
Article in English | MEDLINE | ID: mdl-37690718

ABSTRACT

The Resilient Dairy Genome Project (RDGP) is an international large-scale applied research project that aims to generate genomic tools to breed more resilient dairy cows. In this context, improving feed efficiency and reducing greenhouse gases from dairy is a high priority. The inclusion of traits related to feed efficiency (e.g., dry matter intake [DMI]) or greenhouse gases (e.g., methane emissions [CH4]) relies on available genotypes as well as high quality phenotypes. Currently, 7 countries (i.e., Australia, Canada, Denmark, Germany, Spain, Switzerland, and United States) contribute with genotypes and phenotypes including DMI and CH4. However, combining data are challenging due to differences in recording protocols, measurement technology, genotyping, and animal management across sources. In this study, we provide an overview of how the RDGP partners address these issues to advance international collaboration to generate genomic tools for resilient dairy. Specifically, we describe the current state of the RDGP database, data collection protocols in each country, and the strategies used for managing the shared data. As of February 2022, the database contains 1,289,593 DMI records from 12,687 cows and 17,403 CH4 records from 3,093 cows and continues to grow as countries upload new data over the coming years. No strong genomic differentiation between the populations was identified in this study, which may be beneficial for eventual across-country genomic predictions. Moreover, our results reinforce the need to account for the heterogeneity in the DMI and CH4 phenotypes in genomic analysis.


Subject(s)
Greenhouse Gases , Female , Animals , Cattle , Genomics , Genotype , Australia , Methane
4.
J Anim Sci ; 1012023 Jan 03.
Article in English | MEDLINE | ID: mdl-37943499

ABSTRACT

The body condition of dairy cows is a crucial health and welfare indicator that is widely acknowledged. Dairy herds with a well-management body condition tend to have more fertile and functional cows. Therefore, routine recording of high-quality body condition phenotypes is required. Automated prediction of body condition from 3D images can be a cost-effective approach to current manual recording by technicians. Using 3D-images, we aimed to build a reliable prediction model of body condition for Jersey cows. The dataset consisted of 808 individual Jersey cows with 2,253 phenotypes from three herds in Denmark. Body condition was scored on a 1 to 9 scale and transformed into a 1 to 5 scale with 0.5-unit differences. The cows' back images were recorded using a 3D camera (Microsoft Xbox One Kinect v2). We used contour and back height features from 3D-images as predictors, together with class predictors (evaluator, herd, evaluation round, parity, lactation week). The performance of machine learning algorithms was assessed using H2O AutoML algorithm (h2o.ai). Based on outputs from AutoML, DeepLearning (DL; multi-layer feedforward artificial neural network) and Gradient Boosting Machine (GBM) algorithms were implemented for classification and regression tasks and compared on prediction accuracy. In addition, we compared the Partial Least Square (PLS) method for regression. The training and validation data were divided either through a random 7:3 split for 10 replicates or by allocating two herds for training and one herd for validation. The accuracy of classification models showed the DL algorithm performed better than the GBM algorithm. The DL model achieved a mean accuracy of 48.1% on the exact phenotype and 93.5% accuracy with a 0.5-unit deviation. The performances of PLS and DL regression methods were comparable, with mean coefficient of determination of 0.67 and 0.66, respectively. When we used data from two herds for training and the third herd as validation, we observed a slightly decreased prediction accuracy compared to the 7:3 split of the dataset. The accuracies for DL and PLS in the herd validation scenario were > 38% on the exact phenotype and > 87% accuracy with 0.5-unit deviation. This study demonstrates the feasibility of a reliable body condition prediction model in Jersey cows using 3D-images. The approach developed can be used for reliable and frequent prediction of cows' body condition to improve dairy farm management and genetic evaluations.


The body condition of dairy cows is a crucial health and welfare indicator that is widely acknowledged in dairy cattle management. Routine recording of high-quality body condition phenotypes is required for adaptation in dairy herd management. The use of machine learning to predict the body condition of dairy cows from 3D images can offer a cost-effective approach to the current manual recording performed by technicians. We aimed to build a reliable prediction, based on data from 808 Jersey cows with 2,253 body condition phenotypes from three commercial herds in Denmark. We tested different machine-learning models. All models showed high prediction accuracy, and comparable levels with other published studies on Holstein cows. In a validation test across project herds, prediction accuracy ranged between 87% and 96%.


Subject(s)
Fertility , Lactation , Pregnancy , Female , Cattle , Animals , Neural Networks, Computer , Machine Learning , Algorithms , Milk , Dairying/methods
5.
J Dairy Sci ; 106(12): 9006-9015, 2023 Dec.
Article in English | MEDLINE | ID: mdl-37641284

ABSTRACT

Recording complex phenotypes on a large scale is becoming possible with the incorporation of recently developed new technologies. One of these new technologies is the use of 3-dimensional (3D) cameras on commercial farms to measure feed intake and body weight (BW) daily. Residual feed intake (RFI) has been proposed as a proxy for feed efficiency in several species, including cattle, pigs, and poultry. Dry matter intake (DMI) and BW records are required to calculate RFI, and the use of this new technology will help increase the number of individual records more efficiently. The aim of this study was to estimate genetic parameters (including genetic correlations) for DMI and BW obtained by 3D cameras from 6,000 cows in commercial farms from the breeds Danish Holstein, Jersey, and Nordic Red. Additionally, heritabilities per parity and genetic correlations among parities were estimated for DMI and BW in the 3 breeds. Data included 158,000 weekly records of DMI and BW obtained between 2019 and 2022 on 17 commercial farms. Estimated heritability for DMI ranged from 0.17 to 0.25, whereas for BW they ranged from 0.44 to 0.58. The genetic correlations between DMI and BW were moderately positive (0.58-0.65). Genetic correlations among parities in both traits were highly correlated in the 3 breeds, except for DMI between first parity and late parities in Holstein where they were down to 0.62. Based on these results, we conclude that DMI and BW phenotypes measured by 3D cameras are heritable for the 3 dairy breeds and their heritabilities are comparable to those obtained by traditional methods (scales and feed bins). The high heritabilities and correlations of 3D measurements with the true trait in previous studies demonstrate the potential of this new technology for measuring feed intake and BW in real time. In conclusion, 3D camera technology has the potential to become a valuable tool for automatic and continuous recording of feed intake and BW on commercial farms.


Subject(s)
Eating , Lactation , Animals , Cattle/genetics , Female , Pregnancy , Animal Feed/analysis , Body Weight/genetics , Denmark , Eating/genetics , Farms , Lactation/genetics
6.
Appl Clin Inform ; 14(4): 743-751, 2023 08.
Article in English | MEDLINE | ID: mdl-37399838

ABSTRACT

OBJECTIVES: This study evaluated if medical doctors could identify more hemorrhage events during chart review in a clinical setting when assisted by an artificial intelligence (AI) model and medical doctors' perception of using the AI model. METHODS: To develop the AI model, sentences from 900 electronic health records were labeled as positive or negative for hemorrhage and categorized into one of 12 anatomical locations. The AI model was evaluated on a test cohort consisting of 566 admissions. Using eye-tracking technology, we investigated medical doctors' reading workflow during manual chart review. Moreover, we performed a clinical use study where medical doctors read two admissions with and without AI assistance to evaluate performance when using and perception of using the AI model. RESULTS: The AI model had a sensitivity of 93.7% and a specificity of 98.1% on the test cohort. In the use studies, we found that medical doctors missed more than 33% of relevant sentences when doing chart review without AI assistance. Hemorrhage events described in paragraphs were more often overlooked compared with bullet-pointed hemorrhage mentions. With AI-assisted chart review, medical doctors identified 48 and 49 percentage points more hemorrhage events than without assistance in two admissions, and they were generally positive toward using the AI model as a supporting tool. CONCLUSION: Medical doctors identified more hemorrhage events with AI-assisted chart review and they were generally positive toward using the AI model.


Subject(s)
Artificial Intelligence , Physicians , Humans , Electronic Health Records , Hemorrhage/diagnosis , Hospitalization
7.
Int J Sports Physiol Perform ; 18(8): 866-873, 2023 Aug 01.
Article in English | MEDLINE | ID: mdl-37290763

ABSTRACT

PURPOSE: To investigate the indirect measurement of 1-repetition-maximum (1RM) free-weight half-squat in high-level sprinters using the load-velocity relationship. METHODS: Half-squat load and velocity data from 11 elite sprinters were collected in 2 separate testing sessions. Approximately 24 hours prior to the first testing session, sprinters completed a fatiguing high-intensity training session consisting of running intervals, staircase exercises, and body-weight exercises. Prior to the second testing session, sprinters had rested at least 48 hours. Two different prediction models (multiple-point method, 2-point method) were used to estimate 1RM based on the load and either mean or peak concentric velocity data of submaximal lifts (40%-90% 1RM). The criterion validity of all methods was examined through intraclass correlation coefficients, coefficient of variation (CV%), Bland-Altman plots, and the SEM. RESULTS: None of the estimations were significantly different from the actual 1RM. The multiple-point method showed higher intraclass correlation coefficients (.91 to .97), with CVs from 3.6% to 11.7% and SEMs from 5.4% to 10.6%. The 2-point method showed slightly lower intraclass correlation coefficients (.76 to .95), with CVs 1.4% to 17.5% and SEMs from 9.8% to 26.1%. Bland-Altman plots revealed a mean random bias in estimation of 1RM for both methods (mean and peak velocity) ranging from 1.06 to 13.79 kg. CONCLUSION: Velocity-based methods can be used to roughly estimate 1RM in elite sprinters in the rested and fatigued conditions. However, all methods showed variations that limit their applicability for accurate load prescription for individual athletes.


Subject(s)
Resistance Training , Running , Humans , Muscle Strength , Resistance Training/methods , Exercise , Posture , Weight Lifting
8.
Mol Pharm ; 20(7): 3356-3366, 2023 07 03.
Article in English | MEDLINE | ID: mdl-36952227

ABSTRACT

Despite the success of mRNA-based vaccines against infectious diseases (including COVID-19), safety concerns have been raised relating to the lipid nanoparticles (LNPs) used to deliver the mRNA cargo. Antibodies against the polyethylene glycol (PEG) coating on these non-viral vectors are present in the general population and can in some instances induce allergic reactions. Furthermore, treatment with PEGylated therapeutics may increase the plasma concentration of such anti-PEG antibodies. The widespread use of PEGylated nanoparticles for mRNA vaccines concerns researchers and clinicians about a potential rise in future cases of allergic reactions against mRNA vaccines and cross-reactions with other PEGylated therapeutics. To determine if vaccination with Comirnaty increased the plasma concentration of antibodies against LNPs, we investigated the blood plasma concentration of anti-LNP antibodies in healthy individuals before and after vaccination with the mRNA-based COVID-19 vaccine Comirnaty (BNT162b2). Blood samples were acquired from 21 healthy adults before vaccination, 3-4 weeks after the first vaccination dose but before the second dose, and 2-6 months after the second (booster) dose. The blood plasma concentration of antibodies recognizing the LNPs was analyzed using a microscopy-based assay capable of measuring antibody-binding to individual authentic LNPs. No significant increase in anti-LNP antibodies was observed after two doses of Comirnaty. The LNPs used for intramuscular delivery of mRNA in the vaccine against COVID-19, Comirnaty, do, therefore, not seem to induce the generation of anti-vector antibodies.


Subject(s)
COVID-19 , Hypersensitivity , Nanoparticles , Adult , Humans , COVID-19 Vaccines , BNT162 Vaccine , COVID-19/prevention & control , mRNA Vaccines , Vaccination , Antibodies
9.
Bioengineering (Basel) ; 10(2)2023 Feb 03.
Article in English | MEDLINE | ID: mdl-36829699

ABSTRACT

Sympatico-vagal balance is essential for regulating cardiac electrophysiology and plays an important role in arrhythmogenic conditions. Various noninvasive methods, including electrocardiography (ECG), have been used for clinical assessment of the sympatico-vagal balance. This study aimed to use a custom-designed wearable device to record ECG and ECG-based cardiac function biomarkers to assess sympatico-vagal balance during tonic pain in healthy controls. Nineteen healthy volunteers were included for the ECG measurements using the custom-designed amplifier based on the Texas Instruments ADS1299. The ECG-based biomarkers of the sympatico-vagal balance, (including heart rate variability, deceleration capacity of the heart rate, and periodic repolarization dynamic), were calculated and compared between resting and pain conditions (tonic pain). The custom-designed device provided technically satisfactory ECG recordings. During exposure to tonic pain, the periodic repolarization dynamics increased significantly (p = 0.02), indicating enhancement of sympathetic nervous activity. This study showed that custom-designed wearable devices can potentially be useful in healthcare as a new telemetry technology. The ECG-based novel biomarkers, including periodic repolarization dynamic and deceleration capacity of heart rate, can be used to identify the cold pressor-induced activation of sympathetic and parasympathetic systems, making it useful for future studies on pain-evoked biomarkers.

10.
J Fish Biol ; 102(3): 721-726, 2023 Mar.
Article in English | MEDLINE | ID: mdl-36602275

ABSTRACT

In spring 2022, pink salmon Oncorhynchus gorbuscha smolts were recorded in the UK. Fish were caught in the Rivers Thurso and Oykel in Scotland between 13 and 17 March. To the authors' knowledge, this is the first observation of O. gorbuscha smolts in Europe outside the Scandinavian and Kola peninsulas, including other tributaries of the White and Barents Seas. It also provides evidence of successful spawning in 2021 and completion of the freshwater phase of the life cycle, and indicates the possibility for potential establishment of an O. gorbuscha population in Great Britain.


Subject(s)
Oncorhynchus , Salmon , Animals , Life Cycle Stages , Scotland , Europe , United Kingdom
11.
Microbiol Spectr ; 11(1): e0417422, 2023 02 14.
Article in English | MEDLINE | ID: mdl-36546864

ABSTRACT

The aim of this study was to provide information about immunity against COVID-19 along with risk factors and behavior among employees in day care facilities and preschools (DCS) in Denmark. In collaboration with the Danish Union of Pedagogues, during February and March 2021, 47,810 members were offered a point-of-care rapid SARS-CoV-2 antibody test (POCT) at work and were invited to fill in an electronic questionnaire covering COVID-19 exposure. Seroprevalence data from Danish blood donors (total Ig enzyme-linked immunosorbent assay [ELISA]) were used as a proxy for the Danish population. A total of 21,018 (45%) DCS employees completed the questionnaire and reported their POCT result {median age, 44.3 years (interquartile range [IQR], [32.7 to 53.6]); females, 84.1%}, of which 20,267 (96.4%) were unvaccinated and included in analysis. A total of 1,857 (9.2%) participants tested seropositive, significantly higher than a seroprevalence at 7.6% (risk ratio [RR], 1.2; 95% confidence interval [CI], 1.14 to 1.27) among 40,541 healthy blood donors (median age, 42 years [IQR, 28 to 53]; males, 51.3%). Exposure at work (RR, 2.9; 95% CI, 2.3 to 3.6) was less of a risk factor than exposure within the household (RR, 12.7; 95% CI, 10.2 to 15.8). Less than 25% of participants reported wearing face protection at work. Most of the participants expressed some degree of fear of contracting COVID-19 both at work and outside work. SARS-CoV-2 seroprevalence was slightly higher in DCS staff than in blood donors, but possible exposure at home was associated with a higher risk than at work. DCS staff expressed fear of contracting COVID-19, though there was limited use of face protection at work. IMPORTANCE Identifying at-risk groups and evaluating preventive interventions in at-risk groups is imperative for the ongoing pandemic as well as for the control of future epidemics. Although DCS staff have a much higher risk of being infected within their own household than at their workplace, most are fearful of being infected with COVID-19 or bringing COVID-19 to work. This represents an interesting dilemma and an important issue which should be addressed by public health authorities for risk communication and pandemic planning. This study design can be used in a strategy for ongoing surveillance of COVID-19 immunity or other infections in the population. The findings of this study can be used to assess the need for future preventive interventions in DCS, such as the use of personal protective equipment.


Subject(s)
Antibodies, Viral , COVID-19 , Child Day Care Centers , Faculty , Schools , Adult , Female , Humans , Male , COVID-19/epidemiology , Cross-Sectional Studies , Denmark/epidemiology , Risk Factors , SARS-CoV-2 , Seroepidemiologic Studies
12.
Eur Heart J Qual Care Clin Outcomes ; 9(6): 592-599, 2023 09 12.
Article in English | MEDLINE | ID: mdl-36264293

ABSTRACT

AIMS: Guidelines do not differentiate between the available assays of cardiac troponin (cTn). We compared the prognostic and predictive ability of cTn assays. METHODS AND RESULTS: This was a nationwide cohort study of patients with acute coronary syndrome (ACS) and ≥ 2 cTn measurements of one of four assays: Roche high-sensitivity cTnT (hs-cTnT), Abbott high sensitivity cTnI (hs-cTnI), Siemens Vista cTnI, and Siemens cTnI Ultra. Data were collected from Danish registries from 2009-18. Peak cTn concentration normalized to the 99th percentile was used. Outcomes were myocardial infarction (MI) during admission, one-year all-cause-, cardiovascular-, and non-cardiovascular mortality. Receiver operating characteristics and logistic regression calculating odds ratios (OR) were used. A total of 90 705 patients were included, of which 20 550 (23%) had MI. Siemens Vista cTnI was the strongest predictor of MI, Area under the curve (auc) 0.93 (95% CI 0.93-0.93). In 1 year 9012 (9.9%) of patients had died. An inverted U-shape relationship was observed between concentration of cTn and all-cause mortality. Hs-cTnT OR 21.3 (95% CI 18.4-24.8) at 2-5 times the 99th percentile and 12.1 (95% CI 10.3-14.1) for concentrations >100 times the 99th percentile. The inverted U-shape relationship was only present for non-cardiovascular mortality. The strongest predictor of cardiovascular mortality was hs-cTnT, OR 11.3 (95% CI 6.4-21.8) at 1-2 times the 99th percentile and 88.8 (95% CI 53.2-163.0) for concentrations >100 times the 99th percentile. CONCLUSION: Siemens Vista cTnI was the strongest predictor of MI and hs-cTnT was the strongest predictor of mortality. An inverted U-shape relationship was observed between cTn concentration and non-cardiovascular mortality.


Subject(s)
Myocardial Infarction , Humans , Prognosis , Cohort Studies , Myocardial Infarction/diagnosis , Troponin T , Troponin I
13.
Microbiol Spectr ; 10(6): e0253722, 2022 12 21.
Article in English | MEDLINE | ID: mdl-36350150

ABSTRACT

The majority of long coronavirus disease (COVID) symptoms are not specific to COVID-19 and could be explained by other conditions. The present study aimed to explore whether Danish individuals with a perception that they suffer from long COVID have antibodies against the nucleocapsid antigen, as a proxy for detecting previous infection. The study was conducted in February and March 2021, right after the second surge of the COVID-19 pandemic in Denmark. All members of the social media group on Facebook "Covidramte med senfølger" ("long COVID sufferers'') above the age of 17 years and living in Denmark were invited to participate in a short electronic questionnaire about long COVID risk factors and symptoms. The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) nucleocapsid (N) protein was detected in blood samples as a proxy for natural SARS-CoV-2 infection. The final study population comprised 341 participants (90.6% females) who completed blood sampling and answered the questionnaire. A total of 232 (68%) were seropositive (median age, 49.5 years; interquartile range [IQR], 41 to 55 years; 90.1% females). There was no significant difference between sexes and serostatus. Seronegative and seropositive individuals had a similar burden of symptoms that could be attributed to long COVID. Time since perceived COVID-19 was significantly longer in the group of seronegative individuals than the seropositive ones (P < 0.001). This study suggests that long-COVID sufferers are mostly women and showed that a third of the participants did not have detectable anti-N-protein antibodies. It emphasizes the importance of early confirmation of COVID-19, as this study indicates an overlap between long-COVID symptoms and symptoms that are possibly of another origin. IMPORTANCE This cohort study included questionnaire data as well as anti-nucleocapsid antibody analysis, allowing us to determine whether participants were seropositive due to vaccination or natural infection. The study emphasizes the importance of early confirmation of COVID-19, as antibodies recede with time, and it indicates an overlap between long COVID symptoms and symptoms possibly of another origin.


Subject(s)
COVID-19 , Post-Acute COVID-19 Syndrome , Humans , Female , Middle Aged , Adolescent , Male , Self Report , SARS-CoV-2 , Cohort Studies , Pandemics , COVID-19/epidemiology , Antibodies, Viral , Denmark/epidemiology
14.
Microbiol Res ; 265: 127202, 2022 Dec.
Article in English | MEDLINE | ID: mdl-36167007

ABSTRACT

Uropathogenic Escherichia coli (UPEC) is the primary cause of urinary tract infections (UTIs) in animals and humans. We applied Transposon-Directed Insertion Site sequencing (TraDIS) to determine the fitness genes in two well-characterized UPEC strains, UTI89 and CFT073, in order to identify fitness factors during UTI in a pig model. This novel animal model better reflects the course of UTI in humans than the commonly used mouse model, and facilitates the differentiation between sessile and planktonic UPEC populations. A total of 854 and 483 genes in UTI89 and CFT073, respectively, were predicted to contribute to growth in pig urine, and 1257 and 764, were scored as required for colonization of the bladder. The combined list of fitness genes for growth in urine and cystitis contained 741 (UTI89) and 439 (CFT073) genes. The essential genes for growth on LB agar media supplemented with kanamycin and the fitness factors during growth in human urine were also analyzed in CFT073. A total of 457 essential genes were identified and the pool of fitness genes for growth in human urine included 215 genes. The gene rfaG, which is involved in lipopolysaccharide biosynthesis, was included in all the fitness-gene-lists and was further confirmed to be relevant for all the conditions tested regardless of the host and the strain. Thus, this gene may represent a promising target for the development of new therapeutic strategies against UTI UPEC-associated. Besides this important observation, the study revealed strain-specific differences in gene-essentiality as well as in the fitness-gene-repertoire for growth in human urine and UTI of the pig model, and it identified novel factors required for UPEC-induced UTIs.


Subject(s)
Escherichia coli Infections , Escherichia coli Proteins , Urinary Tract Infections , Uropathogenic Escherichia coli , Agar , Animals , Disease Models, Animal , Escherichia coli Infections/veterinary , Escherichia coli Proteins/genetics , Humans , Kanamycin , Lipopolysaccharides , Mice , Swine , Uropathogenic Escherichia coli/genetics
15.
Xenobiotica ; 52(6): 591-607, 2022 Jun.
Article in English | MEDLINE | ID: mdl-36000364

ABSTRACT

The use of the Göttingen minipig as an animal model for drug safety testing and prediction of human pharmacokinetics (PK) continues to gain momentum in pharmaceutical research and development. The aim of this study was to evaluate in vitro to in vivo extrapolation (IVIVE) methodologies for prediction of hepatic, metabolic clearance (CLhep,met) in Göttingen minipig, using a comprehensive set of compounds.In vivo clearance was determined in Göttingen minipig by intravenous cassette dosing and hepatocyte intrinsic clearance, plasma protein binding and non-specific incubation binding were determined in vitro. Prediction of CLhep,met was performed by IVIVE using conventional and adapted formats of the well-stirred liver model.The best prediction of in vivo CLhep,met from scaled in vitro kinetic data was achieved using an empirical correction factor based on a 'regression offset' of the IVIV relationship.In summary, these results expand the in vitro and in vivo PK knowledge in Göttingen minipig. We show regression corrected IVIVE provides superior prediction of in vivo CLhep,met in minipig offering a practical, unified scaling approach to address systematic under-predictions. Finally, we propose a reference set for researchers to establish their own 'lab-specific' regression correction for IVIVE in minipig.


Subject(s)
Hepatocytes , Models, Biological , Animals , Hepatocytes/metabolism , Humans , Kinetics , Liver/metabolism , Metabolic Clearance Rate , Pharmaceutical Preparations/metabolism , Pharmacokinetics , Swine , Swine, Miniature
16.
J Anim Physiol Anim Nutr (Berl) ; 106(6): 1356-1363, 2022 Nov.
Article in English | MEDLINE | ID: mdl-35894118

ABSTRACT

Sieve analyses of hindgut contents of horses as well as observations in horses where plastic markers had been applied to a caecal cannula suggested that there may be a discrimination by particle size in the passage or retention of digesta. Here, we performed a similar experiment with five caecum-cannulated horses (562 ± 31 kg) fed a constant amount (6.81 kg dry matter/day) of grass hay. Passage markers representing the liquid (Co-EDTA) as well as the particulate digesta phase (Yb-undefined; Cr mordanted fibre 1-2 mm; Ce-mordanted fibre 8 mm) were given as a pulse-dose into the cannula to measure their mean retention times (MRT). The MRTs were compared by repeated-measurements analysis of variance. The MRT in the hindgut was 22.2 ± 2.4 h for Co, 25.0 ± 3.4 h for Yb, 26.2 ± 1.6 h for Cr and 26.3 ± 1.5 h for Ce. Whereas differences between the particle marker MRTs were not significant (padj. > 0.05), significant differences were observed between the solute marker Co and each of the particle markers Cr and Ce (padj. < 0.009). The results confirm the well-known significant, albeit small, difference in MRT in horses between the fluid and the particle digesta phase, and corroborate another recent study that used a combination of whole, marked hay and individual marker analysis in different particle size fractions of the faeces, which also did not detect a selective retention of any particle size class.


Subject(s)
Cecum , Horses , Particle Size , Animals , Animal Feed , Cecum/anatomy & histology , Cecum/physiology , Dietary Fiber/administration & dosage , Dietary Fiber/analysis , Digestion , Feces/chemistry , Horses/anatomy & histology , Catheterization/veterinary
17.
BMC Public Health ; 22(1): 1261, 2022 06 27.
Article in English | MEDLINE | ID: mdl-35761270

ABSTRACT

BACKGROUND: People experiencing homelessness (PEH) and associated shelter workers may be at higher risk of infection with "Severe acute respiratory syndrome coronavirus 2" (SARS-CoV-2). The aim of this study was to determine the prevalence of SARS-CoV-2 among PEH and shelter workers in Denmark. DESIGN AND METHODS: In November 2020, we conducted a nationwide cross-sectional seroprevalence study among PEH and shelter workers at 21 recruitment sites in Denmark. The assessment included a point-of-care test for antibodies against SARS-CoV-2, followed by a questionnaire. The seroprevalence was compared to that of geographically matched blood donors considered as a proxy for the background population, tested using a total Ig ELISA assay. RESULTS: We included 827 participants in the study, of whom 819 provided their SARS-CoV-2 antibody results. Of those, 628 were PEH (median age 50.8 (IQR 40.9-59.1) years, 35.5% female) and 191 were shelter workers (median age 46.6 (IQR 36.1-55.0) years and 74.5% female). The overall seroprevalence was 6.7% and was similar among PEH and shelter workers (6.8% vs 6.3%, p = 0.87); and 12.2% among all participants who engaged in sex work. The overall participant seroprevalence was significantly higher than that of the background population (2.9%, p < 0.001). When combining all participants who reported sex work or were recruited at designated safe havens, we found a significantly increased risk of seropositivity compared to other participants (OR 2.23, 95%CI 1.06-4.43, p = 0.02). Seropositive and seronegative participants reported a similar presence of at least one SARS-CoV-2 associated symptom (49% and 54%, respectively). INTERPRETATIONS: The prevalence of SARS-CoV-2 antibodies was more than twice as high among PEH and associated shelter workers, compared to the background population. These results could be taken into consideration when deciding in which phase PEH are eligible for a vaccine, as part of the Danish national SARS-CoV-2 vaccination program rollout. FUNDING: TrygFonden and HelseFonden.


Subject(s)
COVID-19 , Ill-Housed Persons , Antibodies, Viral , COVID-19/epidemiology , COVID-19 Vaccines , Cross-Sectional Studies , Denmark/epidemiology , Female , Health Personnel , Humans , Male , Middle Aged , Prevalence , SARS-CoV-2 , Seroepidemiologic Studies
18.
Nano Lett ; 22(13): 5294-5300, 2022 Jul 13.
Article in English | MEDLINE | ID: mdl-35729708

ABSTRACT

Long-distance transport and control of spin waves through nanochannels is essential for integrated magnonic technology. Current strategies relying on the patterning of single-layer nano-waveguides suffer from a decline of the spin-wave decay length upon downscaling or require large magnetic bias field. Here, we introduce a new waveguiding structure based on low-damping continuous yttrium iron garnet (YIG) films. Rather than patterning the YIG film, we define nanoscopic spin-wave transporting channels within YIG by dipolar coupling to ferromagnetic metal nanostripes. The hybrid material structure offers long-distance transport of spin waves with a decay length of ∼20 µm in 160 nm wide waveguides over a broad frequency range at small bias field. We further evidence that spin waves can be redirected easily by stray-field-induced bends in continuous YIG films. The combination of low-loss spin-wave guiding and straightforward nanofabrication highlights a new approach toward the implementation of magnonic integrated circuits for spin-wave computing.

19.
Cancers (Basel) ; 14(9)2022 Apr 21.
Article in English | MEDLINE | ID: mdl-35565208

ABSTRACT

Liquid biopsy strategies in pediatric patients are challenging due to low body weight. This study investigated cfDNA size distribution and concentration in blood, bone marrow, cerebrospinal fluid, and urine from 84 patients with neuroblastoma classified as low (n = 28), intermediate (n = 6), or high risk (n = 50) to provide key data for liquid biopsy biobanking strategies. The average volume of blood and bone marrow plasma provided ranged between 1 and 2 mL. Analysis of 637 DNA electropherograms obtained by Agilent TapeStation measurement revealed five different major profiles and characteristic DNA size distribution patterns for each of the biofluids. The proportion of samples containing primarily cfDNA was, at 85.5%, the highest for blood plasma. The median cfDNA concentration amounted to 6.28 ng/mL (blood plasma), 58.2 ng/mL (bone marrow plasma), 0.08 ng/mL (cerebrospinal fluid), and 0.49 ng/mL (urine) in samples. Meta-analysis of the dataset demonstrated that multiple cfDNA-based assays employing the same biofluid sample optimally require sampling volumes of 1 mL for blood and bone marrow plasma, 2 mL for cerebrospinal fluid, and as large as possible for urine samples. A favorable response to treatment was associated with a rapid decrease in blood-based cfDNA concentration in patients with high-risk neuroblastoma. Blood-based cfDNA concentration was not sufficient as a single parameter to indicate high-risk disease recurrence. We provide proof of concept that monitoring neuroblastoma-specific markers in very small blood volumes from infants is feasible.

20.
Clin Cancer Res ; 28(9): 1809-1820, 2022 05 02.
Article in English | MEDLINE | ID: mdl-35247920

ABSTRACT

PURPOSE: Treating refractory or relapsed neuroblastoma remains challenging. Monitoring body fluids for tumor-derived molecular information indicating minimal residual disease supports more frequent diagnostic surveillance and may have the power to detect resistant subclones before they give rise to relapses. If actionable targets are identified from liquid biopsies, targeted treatment options can be considered earlier. EXPERIMENTAL DESIGN: Droplet digital PCR assays assessing MYCN and ALK copy numbers and allelic frequencies of ALK p.F1174L and ALK p.R1275Q mutations were applied to longitudinally collected liquid biopsies and matched tumor tissue samples from 31 patients with high-risk neuroblastoma. Total cell-free DNA (cfDNA) levels and marker detection were compared with data from routine clinical diagnostics. RESULTS: Total cfDNA concentrations in blood plasma from patients with high-risk neuroblastoma were higher than in healthy controls and consistently correlated with neuron-specific enolase levels and lactate dehydrogenase activity but not with 123I-meta-iodobenzylguanidine scores at relapse diagnosis. Targeted cfDNA diagnostics proved superior for early relapse detection to all current diagnostics in 2 patients. Marker analysis in cfDNA indicated intratumor heterogeneity for cell clones harboring MYCN amplifications and druggable ALK alterations that were not detectable in matched tumor tissue samples in 17 patients from our cohort. Proof of concept is provided for molecular target detection in cerebrospinal fluid from patients with isolated central nervous system relapses. CONCLUSIONS: Tumor-specific alterations can be identified and monitored during disease course in liquid biopsies from pediatric patients with high-risk neuroblastoma. This approach to cfDNA surveillance warrants further prospective validation and exploitation for diagnostic purposes and to guide therapeutic decisions.


Subject(s)
Cell-Free Nucleic Acids , Circulating Tumor DNA , Neuroblastoma , Cell-Free Nucleic Acids/genetics , Child , Circulating Tumor DNA/genetics , Humans , Mutation , N-Myc Proto-Oncogene Protein/genetics , Neoplasm Recurrence, Local/genetics , Neuroblastoma/diagnosis , Neuroblastoma/genetics , Receptor Protein-Tyrosine Kinases/genetics
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