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1.
Chem Sci ; 9(1): 189-198, 2018 Jan 07.
Article in English | MEDLINE | ID: mdl-29629087

ABSTRACT

Three-dimensional (3D) histology is the next frontier for modern anatomo-pathology. Characterizing abnormal parameters in a tissue is essential to understand the rationale of pathology development. However, there is no analytical technique, in vivo or histological, that is able to discover such abnormal features and provide a 3D distribution at microscopic resolution. Here, we introduce a unique high-throughput infrared (IR) microscopy method that combines automated image correction and subsequent spectral data analysis for 3D-IR image reconstruction. We performed spectral analysis of a complete organ for a small animal model, a mouse brain with an implanted glioma tumor. The 3D-IR image is reconstructed from 370 consecutive tissue sections and corrected using the X-ray tomogram of the organ for an accurate quantitative analysis of the chemical content. A 3D matrix of 89 × 106 IR spectra is generated, allowing us to separate the tumor mass from healthy brain tissues based on various anatomical, chemical, and metabolic parameters. We demonstrate that quantitative metabolic parameters can be extracted from the IR spectra for the characterization of the brain vs. tumor metabolism (assessing the Warburg effect in tumors). Our method can be further exploited by searching for the whole spectral profile, discriminating tumor vs. healthy tissue in a non-supervised manner, which we call 'spectromics'.

2.
Opt Express ; 23(15): 20062-74, 2015 Jul 27.
Article in English | MEDLINE | ID: mdl-26367664

ABSTRACT

Conventional X-ray micro-computed tomography (µCT) is unable to meet the need for real-time, high-resolution, time-resolved imaging of multi-phase fluid flow. High signal-to-noise-ratio (SNR) data acquisition is too slow and results in motion artefacts in the images, while fast acquisition is too noisy and results in poor image contrast. We present a Bayesian framework for time-resolved tomography that uses priors to drastically reduce the required amount of experiment data. This enables high-quality time-resolved imaging through a data acquisition protocol that is both rapid and high SNR. Here we show that the framework: (i) encompasses our previous, algorithms for imaging two-phase flow as limiting cases; (ii) produces more accurate results from imperfect (i.e. real) data, where it can be compared to our previous work; and (iii) is generalisable to previously intractable systems, such as three-phase flow.

3.
Appl Opt ; 50(20): 3604-8, 2011 Jul 10.
Article in English | MEDLINE | ID: mdl-21743572

ABSTRACT

A monochromatic millimeter-wave imaging system coupled with an infrared temperature sensor has been used to investigate historic objects preserved at the Museum of Aquitaine (France). In particular, two-dimensional and three-dimensional analyses have been performed in order to reveal the internal structure of nearly 3500-year-old sealed Egyptian jars.


Subject(s)
Terahertz Spectroscopy/methods , Tomography, X-Ray Computed/methods , Aluminum Silicates , Archaeology/methods , Clay , Egypt, Ancient , Equipment Design , History, Ancient , Household Articles/history , Humans , Mummies/history
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