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1.
J Phys Chem A ; 117(49): 13112-26, 2013 Dec 12.
Article in English | MEDLINE | ID: mdl-24252151

ABSTRACT

The excited-state dynamics of two donor-acceptor biaryls that differ by the strength of the acceptor, a pyridinium or a pyrylium moiety, have been investigated using a combination of steady-state solvatochromic absorption, ultrafast fluorescence, as well as visible and infrared transient absorption spectroscopies. The negative solvatochromic behavior of pyridinium phenolate indicates that the permanent electric dipole moment experiences a decrease upon S1 ← S0 excitation, implying that the ground state possesses more zwitterionic character than the excited state. In contrast, pyrylium phenolate exhibits a weakly positive solvatochromic behavior corresponding to a small increase in the dipole moment upon excitation, implying more zwitterionic character in the excited than the ground state. Both compounds are therefore situated at different sides of the cyanine-limit structure, which has equally polar ground and excited states. Despite these differences, both molecules exhibit qualitatively similar excited-state properties. They are characterized by a very short fluorescence lifetime, increasing from about 1 to 20 ps, when varying solvent viscosity from 0.4 to 11 cP. There are, however, characteristic differences between the two compounds: The excited-state lifetimes of the pyrylium dye are shorter and also depend somewhat on polarity. The ensemble of spectroscopic data can be explained with a model where the emitting Franck-Condon excited state relaxes upon twisting around the single bond between the aryl units to a point where the excited- and ground-state surfaces are very close or intersect. After internal conversion to the ground state, the distorted molecule relaxes back to its equilibrium planar configuration, again largely dependent upon solvent viscosity. However, in this case, the kinetics for the pyrylium dye are slower than for the pyridinium dye and the polar solvent-induced acceleration is significantly stronger than in the excited state. This difference of kinetic behavior between the two compounds is a direct consequence of the change of the electronic structure from a normal to an overcritical merocyanine evidenced by steady-state spectroscopy.

2.
Phys Chem Chem Phys ; 14(2): 562-74, 2012 Jan 14.
Article in English | MEDLINE | ID: mdl-22071595

ABSTRACT

The excited-state dynamics of a donor-acceptor phenol-pyridinium biaryl cation was investigated in various solvents by femtosecond transient absorption spectroscopy and temperature dependent steady-state emission measurements. After excitation to a near-planar Franck-Condon delocalized excited S(1)(DE) state with mesomeric character, three fast relaxation processes are well resolved: solvation, intramolecular rearrangement leading to a twisted charge-shift (CSh) S(1) state with localized character, and excited-state proton transfer (ESPT) to the solvent leading to the phenoxide-pyridinium zwitterion. The proton transfer kinetics depends on the proton accepting character of the solvent whereas the interring torsional kinetics depends on the solvent polarity and viscosity. In nitriles, ESPT does not occur and interring twisting arises with no significant intrinsic barrier, but still slower than solvation. The CSh state is notably fluorescent. In alcohols and water, ESPT is faster than the solvation and DE → CSh relaxation processes and yields the zwitterion hot ground state, which strongly quenches the fluorescence. In THF, solvation and interring twisting occur first, leading to the fully relaxed, weakly fluorescent CSh state, followed by slow ESPT towards the zwitterion. At low temperature (77 K), the large viscous barrier of the solvent inhibits the torsional relaxation but ESPT still arises to some extent. Strong emission from the DE geometry and planar zwitterion is thus observed. Finally, quantum chemical calculations were performed on the ground and excited state of model phenol-pyridinium and phenoxide-pyridinium compounds. Strong S(1) state energy stabilization is predicted upon twisting in both cases, consistent with a fast relaxation towards the perpendicular geometry. A substantial S(0)-S(1) energy gap is still present for the twisted cationic species, which can explain the long-lived emission of the CSh state in nitriles. A quite different situation arises with the zwitterion for which the S(0)-S(1) energy gap predicted at the twisted geometry is very small. This suggests a close-lying conical intersection and can account for the strong fluorescence quenching observed in solvents where the zwitterion is produced by ESPT.

3.
Chemistry ; 16(11): 3392-402, 2010 Mar 15.
Article in English | MEDLINE | ID: mdl-20175158

ABSTRACT

The phenanthridinium chromophores 5-ethyl-6-phenylphenanthridinium (1), 5-ethyl-6-methylphenanthridinium (2), 3,8-diamino-5-ethyl-6-methylphenanthridinium (3), and 3,8-diamino-5-ethyl-6-(4-N,N-diethylaminophenyl)phenanthridinium (4) were characterized by their optical and redox properties. All dyes were applied in titration experiments with a random-sequence 17mer DNA duplex and their binding affinities were determined. The results were compared to well-known ethidium bromide (E). In general, this set of data allows the influence of substituents in positions 3, 6, and 8 on the optical properties of E to be elucidated. Especially, compound 4 was used to compare the weak electron-donating character of the phenyl substituent at position 6 of E with the more electron-donating 4-N,N-diethylaminophenyl group. Analysis of all of the measurements revealed two pairs of chromophores. The first pair, consisting of 1 and 2, lacks the amino groups in positions 3 and 8, and, as a result, these dyes exhibit clearly altered optical and electrochemical properties compared with E. In the presence of DNA, a significant fluorescence quenching was observed. Their binding affinity to DNA is reduced by nearly one order of magnitude. The electronic effect of the phenyl group in position 6 on this type of dye is rather small. The properties of the second set, 3 and 4, are similar to E due to the presence of the two strongly electron-donating amino groups in positions 3 and 8. However, in contrast to 1 and 2, the electron-donating character of the substituent in position 6 of 3 and 4 is critical. The binding, as well as the fluorescence enhancement, is clearly related to the electron-donating effect of this substituent. Accordingly, compound 4 shows the strongest binding affinity and the strongest fluorescence enhancement. Quantum chemical calculations reveal a general mechanism related to the twisted intramolecular charge transfer (TICT) model. Accordingly, an increase of the twist angle between the phenyl ring in position 6 and the phenanthridinium core opens a nonradiative channel in the excited state that depends on the electron-donating character of the phenyl group. Access to this channel is hindered upon binding to DNA.


Subject(s)
Benzene/chemistry , DNA/chemistry , Ethidium/chemistry , Fluorescent Dyes/chemistry , Phenanthridines/chemistry , Binding Sites , Oxidation-Reduction , Phenanthridines/chemical synthesis , Quantum Theory , Spectrophotometry, Ultraviolet
4.
J Phys Chem A ; 114(5): 2179-88, 2010 Feb 11.
Article in English | MEDLINE | ID: mdl-20085356

ABSTRACT

Donor-acceptor substituted styrenes and phenylbutadienes with substituents varying in donor and acceptor strength and as reconstituted chromophore-protein complexes were investigated as model compounds for the protonated Schiff base chromophore in bacteriorhodopsin (bR) both experimentally and theoretically. Charge distribution, donor-acceptor strength, and the shift of the absorption energy are correlated. The effect of the external electrostatic field was tested with a compound carrying an additional nonconjugated charge. The concept of overpolarization by the external charge, that is, the reversal of the relative importance of the two main resonance structures in S(0) and S(1), has been emphasized and related to a simple qualitative 2 x 2 interaction model. The variable donor approach is a new way for a better understanding of the Opsin shift in Bacteriorhodopsin.


Subject(s)
Bacteriorhodopsins/chemistry , Butadienes/chemistry , Computational Biology , Models, Molecular , Opsins/chemistry , Optics and Photonics , Proteins/chemistry , Protons , Quantum Theory , Schiff Bases/chemistry , Styrenes/chemistry , Thermodynamics
5.
Clin Cancer Res ; 14(14): 4584-92, 2008 Jul 15.
Article in English | MEDLINE | ID: mdl-18628473

ABSTRACT

PURPOSE: Invasion and metastasis of malignant epithelial cells into normal tissues is accompanied by adaptive changes in the mesenchyme-derived supporting stroma of the target organs. Altered gene expression in these nontransformed stromal cells provides potential targets for therapy. The present study was undertaken to determine the antitumor effects of an antibody-conjugate against fibroblast activation protein-alpha, a cell surface protease of activated tumor fibroblasts. EXPERIMENTAL DESIGN: A novel antibody-maytansinoid conjugate, monoclonal antibody (mAb) FAP5-DM1, was developed to target a shared epitope of human, mouse, and cynomolgus monkey fibroblast activation protein-alpha, enabling preclinical efficacy and tolerability assessments. We have used stroma-rich models in immunodeficient mice, which recapitulate the histotypic arrangement found in human epithelial cancers. RESULTS: Treatment with mAb FAP5-DM1 induced long-lasting inhibition of tumor growth and complete regressions in xenograft models of lung, pancreas, and head and neck cancers with no signs of intolerability. Analysis of chemically distinct conjugates, resistance models, and biomarkers implicates a unique mode of action, with mitotic arrest and apoptosis of malignant epithelial cells coupled to disruption of fibroblastic and vascular structures. CONCLUSIONS: We show that mAb FAP5-DM1 combines excellent efficacy and tolerability and provides a first assessment of the mode of action of a novel drug candidate for tumor stroma targeting, thus encouraging further development toward clinical testing of this treatment paradigm.


Subject(s)
Antibodies, Monoclonal/therapeutic use , Antigens, Neoplasm/immunology , Biomarkers, Tumor/immunology , Fibroblasts/immunology , Immunoconjugates/therapeutic use , Immunotherapy/methods , Neoplasms/therapy , Serine Endopeptidases/immunology , Animals , Antibodies, Monoclonal/immunology , Antibody Specificity , Endopeptidases , Gelatinases , Humans , Immunoconjugates/chemistry , Immunoconjugates/immunology , Immunohistochemistry , Macaca fascicularis , Maytansine/chemistry , Maytansine/immunology , Maytansine/therapeutic use , Membrane Proteins , Mice , Neoplasms/immunology , Surface Plasmon Resonance
6.
Cancer Res ; 68(12): 4774-82, 2008 Jun 15.
Article in English | MEDLINE | ID: mdl-18559524

ABSTRACT

Inhibition of tumor angiogenesis through blockade of the vascular endothelial growth factor (VEGF) signaling pathway is a novel treatment modality in oncology. Preclinical findings suggest that long-term clinical outcomes may improve with blockade of additional proangiogenic receptor tyrosine kinases: platelet-derived growth factor receptors (PDGFR) and fibroblast growth factor receptors (FGFR). BIBF 1120 is an indolinone derivative potently blocking VEGF receptor (VEGFR), PDGFR and FGFR kinase activity in enzymatic assays (IC(50), 20-100 nmol/L). BIBF 1120 inhibits mitogen-activated protein kinase and Akt signaling pathways in three cell types contributing to angiogenesis, endothelial cells, pericytes, and smooth muscle cells, resulting in inhibition of cell proliferation (EC(50), 10-80 nmol/L) and apoptosis. In all tumor models tested thus far, including human tumor xenografts growing in nude mice and a syngeneic rat tumor model, BIBF 1120 is highly active at well-tolerated doses (25-100 mg/kg daily p.o.), as measured by magnetic resonance imaging of tumor perfusion after 3 days, reducing vessel density and vessel integrity after 5 days, and inducing profound growth inhibition. A distinct pharmacodynamic feature of BIBF 1120 in cell culture is sustained pathway inhibition (up to 32 hours after 1-hour treatment), suggesting slow receptor off-kinetics. Although BIBF 1120 is rapidly metabolized in vivo by methylester cleavage, resulting in a short mean residence time, once daily oral dosing is fully efficacious in xenograft models. These distinctive pharmacokinetic and pharmacodynamic properties may help explain clinical observations with BIBF 1120, currently entering phase III clinical development.


Subject(s)
Blood Coagulation Factors/antagonists & inhibitors , Enzyme Inhibitors/therapeutic use , Indoles/therapeutic use , Neoplasms, Experimental/drug therapy , Receptors, Fibroblast Growth Factor/antagonists & inhibitors , Receptors, Platelet-Derived Growth Factor/antagonists & inhibitors , Vascular Endothelial Growth Factor Receptor-2/antagonists & inhibitors , Animals , Apoptosis/drug effects , Cell Proliferation/drug effects , Cells, Cultured , Endothelium, Vascular/cytology , Endothelium, Vascular/drug effects , Endothelium, Vascular/metabolism , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/pharmacokinetics , Female , Humans , Indoles/chemical synthesis , Indoles/pharmacokinetics , Mice , Mice, Nude , Molecular Structure , Myocytes, Smooth Muscle/drug effects , Myocytes, Smooth Muscle/metabolism , Neoplasms, Experimental/metabolism , Neoplasms, Experimental/pathology , Pericytes/cytology , Pericytes/drug effects , Pericytes/metabolism , Rats , Rats, Inbred F344 , Receptors, Fibroblast Growth Factor/metabolism , Signal Transduction , Tissue Distribution , Vascular Endothelial Growth Factor A/metabolism , Vascular Endothelial Growth Factor Receptor-2/immunology , Vascular Endothelial Growth Factor Receptor-2/metabolism , Xenograft Model Antitumor Assays
7.
Int J Oncol ; 31(1): 59-67, 2007 Jul.
Article in English | MEDLINE | ID: mdl-17549405

ABSTRACT

Medullary thyroid carcinomas are aggressive neoplasias that metastasize very early to loco-regional lymph nodes, and tumors with a desmoplastic stromal reaction have a higher incidence of lymph node metastasis. In order to characterize the desmoplastic response in thyroid cancers, we evaluated the expression pattern of three molecular markers of activated fibroblasts/myofibroblasts, namely, fibroblast activation protein alpha (FAPalpha), tenascin-C (Tn-C), and alpha-smooth muscle actin (alpha-SMA), as well as the endothelial markers endoglyx-1, CD34 and CD31 in a series of 28 metastatic and non-metastatic medullary thyroid cancers. Immunohistochemical studies demonstrated that the three fibroblast activation markers (FAPalpha, Tn-C, alpha-SMA) are consistently expressed in the peritumoral and intratumoral stromal compartment of medullary thyroid carcinomas and expression of FAPalpha and Tn-C correlated with the degree of desmoplasia determined histologically (p=0.001 for FAPalpha and p<0.001 for Tn-C). Moreover, the extent of desmoplasia as well as the expression of FAPalpha and Tn-C correlated with the presence of lymph node (LN) metastases (p=0.002, p=0.005 and p=0.002, respectively). No correlation was found between the microvessel density (neoangiogenesis) in the tumor stroma, assessed with the endoglyx-1, CD34 and CD31 markers, and the degree of desmoplasia or incidence of LN metastases. Using a bioinformatics-based search of the BioExpresstrade mark database we found in a series of 48 thyroid cancers a significant correlation between FAPalpha RNA expression and incidence of LN metastases also in papillary cancers. These findings suggest that the link between specific molecular markers of tumor stromal reaction and locoregional metastasis extends from medullary to other thyroid cancer types.


Subject(s)
Actins/analysis , Antigens, Neoplasm/analysis , Biomarkers, Tumor/analysis , Carcinoma, Medullary/pathology , Serine Endopeptidases/analysis , Tenascin/analysis , Thyroid Neoplasms/pathology , Actins/genetics , Adult , Aged , Aged, 80 and over , Antigens, CD34/analysis , Antigens, Neoplasm/genetics , Antigens, Surface/analysis , Biomarkers, Tumor/genetics , Carcinoma, Medullary/chemistry , Computational Biology , Endopeptidases , Female , Gelatinases , Humans , Immunohistochemistry , Lymphatic Metastasis , Male , Membrane Glycoproteins/analysis , Membrane Proteins , Middle Aged , Platelet Endothelial Cell Adhesion Molecule-1/analysis , Serine Endopeptidases/genetics , Stromal Cells/chemistry , Stromal Cells/pathology , Tenascin/genetics , Thyroid Neoplasms/chemistry
8.
Curr Biol ; 17(4): 316-22, 2007 Feb 20.
Article in English | MEDLINE | ID: mdl-17291758

ABSTRACT

Fine-mapping of the cell-division cycle, notably the identification of mitotic kinase signaling pathways, provides novel opportunities for cancer-drug discovery. As a key regulator of multiple steps during mitotic progression across eukaryotic species, the serine/threonine-specific Polo-like kinase 1 (Plk1) is highly expressed in malignant cells and serves as a negative prognostic marker in specific human cancer types . Here, we report the discovery of a potent small-molecule inhibitor of mammalian Plk1, BI 2536, which inhibits Plk1 enzyme activity at low nanomolar concentrations. The compound potently causes a mitotic arrest and induces apoptosis in human cancer cell lines of diverse tissue origin and oncogenome signature. BI 2536 inhibits growth of human tumor xenografts in nude mice and induces regression of large tumors with well-tolerated intravenous dose regimens. In treated tumors, cells arrest in prometaphase, accumulate phosphohistone H3, and contain aberrant mitotic spindles. This mitotic arrest is followed by a surge in apoptosis, detectable by immunohistochemistry and noninvasive optical and magnetic resonance imaging. For addressing the therapeutic potential of Plk1 inhibition, BI 2536 has progressed into clinical studies in patients with locally advanced or metastatic cancers.


Subject(s)
Apoptosis/drug effects , Cell Cycle Proteins/antagonists & inhibitors , Cell Cycle/physiology , Enzyme Inhibitors/pharmacology , Neoplasms/metabolism , Protein Serine-Threonine Kinases/antagonists & inhibitors , Proto-Oncogene Proteins/antagonists & inhibitors , Pteridines/pharmacology , Signal Transduction/physiology , Animals , Body Weight , Cell Cycle Proteins/metabolism , Dose-Response Relationship, Drug , Enzyme Inhibitors/metabolism , Female , Flow Cytometry , HeLa Cells , Humans , Immunohistochemistry , Magnetic Resonance Imaging , Mice , Microscopy, Fluorescence , Protein Serine-Threonine Kinases/metabolism , Proto-Oncogene Proteins/metabolism , Pteridines/metabolism , Spectrometry, Fluorescence , Xenograft Model Antitumor Assays , Polo-Like Kinase 1
9.
Curr Biol ; 17(4): 304-15, 2007 Feb 20.
Article in English | MEDLINE | ID: mdl-17291761

ABSTRACT

BACKGROUND: The mitotic kinases, Cdk1, Aurora A/B, and Polo-like kinase 1 (Plk1) have been characterized extensively to further understanding of mitotic mechanisms and as potential targets for cancer therapy. Cdk1 and Aurora kinase studies have been facilitated by small-molecule inhibitors, but few if any potent Plk1 inhibitors have been identified. RESULTS: We describe the cellular effects of a novel compound, BI 2536, a potent and selective inhibitor of Plk1. The fact that BI 2536 blocks Plk1 activity fully and instantaneously enabled us to study controversial and unknown functions of Plk1. Cells treated with BI 2536 are delayed in prophase but eventually import Cdk1-cyclin B into the nucleus, enter prometaphase, and degrade cyclin A, although BI 2536 prevents degradation of the APC/C inhibitor Emi1. BI 2536-treated cells lack prophase microtubule asters and thus polymerize mitotic microtubules only after nuclear-envelope breakdown and form monopolar spindles that do not stably attach to kinetochores. Mad2 accumulates at kinetochores, and cells arrest with an activated spindle-assembly checkpoint. BI 2536 prevents Plk1's enrichment at kinetochores and centrosomes, and when added to metaphase cells, it induces detachment of microtubules from kinetochores and leads to spindle collapse. CONCLUSIONS: Our results suggest that Plk1's accumulation at centrosomes and kinetochores depends on its own activity and that this activity is required for maintaining centrosome and kinetochore function. Our data also show that Plk1 is not required for prophase entry, but delays transition to prometaphase, and that Emi1 destruction in prometaphase is not essential for APC/C-mediated cyclin A degradation.


Subject(s)
Cell Cycle Proteins/antagonists & inhibitors , Cell Cycle Proteins/metabolism , Enzyme Inhibitors/pharmacology , F-Box Proteins/metabolism , Microtubules/drug effects , Mitosis/physiology , Protein Serine-Threonine Kinases/antagonists & inhibitors , Proto-Oncogene Proteins/antagonists & inhibitors , Pteridines/pharmacology , Spindle Apparatus/drug effects , Dose-Response Relationship, Drug , Enzyme Inhibitors/metabolism , HeLa Cells , Humans , Image Processing, Computer-Assisted , Microscopy, Electron, Transmission , Microscopy, Fluorescence , Microtubules/metabolism , Protein Serine-Threonine Kinases/metabolism , Proto-Oncogene Proteins/metabolism , Pteridines/metabolism , Spindle Apparatus/metabolism , Polo-Like Kinase 1
10.
Cancer Immun ; 6: 10, 2006 Jul 31.
Article in English | MEDLINE | ID: mdl-16875435

ABSTRACT

Endosialin is a C-type lectin-like cell surface receptor of unknown function, with a distinctive pattern of endothelial expression in newly formed blood vessels in human cancers. The murine orthologue of endosialin has been identified, opening up the analysis of developmental regulation in the embryo and in aberrant tissue remodeling, notably cancer angiogenesis. To advance these studies we have generated an antibody to the extracellular domain of mouse endosialin and mapped protein expression from embryonic day E10.0 to the adult stage, complemented by mRNA quantification and co-typing for standard endothelial markers. Four main findings emerged. First, endosialin protein is restricted to vascular endothelium and fibroblast-like cells in developing organs, and largely disappears in the adult. Second, endothelial expression varies markedly between organs regarding spatial and temporal patterns. For instance, in the E10.0 embryo, endosialin is prominent in the endothelium of the dorsal aorta and, from E11.0 to E14.5, in vessels sprouting from the dorsal aorta, in perineural vascular plexuses, and in brain capillaries. Third, circumscribed mesenchymal expression in fibroblast-like cells was evident throughout development, most pronounced adjacent to certain budding epithelia, as exemplified by the lung and kidney glomeruli, but unrelated to the endothelial expression. The endosialin protein persists in the stromal fibroblasts of the adult uterus. Finally, in subcutaneous cancer xenograft models endosialin re-appears in the host-derived tumor stroma, both in neo-angiogenic vascular endothelium and in activated stromal fibroblasts. In future studies, the search for intrinsic or extrinsic signals contributing to endosialin induction in cancer stroma will be of interest.


Subject(s)
Antigens, CD/metabolism , Endothelium, Vascular/metabolism , Gene Expression Regulation, Developmental , Neoplasm Proteins/metabolism , Neoplasms, Experimental/metabolism , Neovascularization, Pathologic , Animals , Animals, Newborn , Antibodies/metabolism , Antigens, CD/genetics , Antigens, CD/immunology , Embryonic Development , Immunohistochemistry , Mice , Mice, Inbred C57BL , Neoplasm Proteins/genetics , Neoplasm Proteins/immunology , Tumor Cells, Cultured
11.
Diagn Mol Pathol ; 15(1): 35-42, 2006 Mar.
Article in English | MEDLINE | ID: mdl-16531767

ABSTRACT

Transcriptional profiling of cancer biopsies is used extensively to identify expression signatures for specific cancer types, diagnostic and prognostic subgroups, and novel molecular targets for therapy. To broaden these applications, several challenges remain. For example, the integrity of RNA extracted even from small tissue samples has to be insured and monitored. Moreover, total tumor RNA may hide the marked histologic heterogeneity of human cancers. A principle approach to this heterogeneity has been provided by laser capture microdissection performed on antibody-stained tissue sections (immuno-LCM; iLCM). In this study, we have established a procedure to assess the quality of RNA obtained from tissue sections, coupled with immunostaining using antibodies to different tumor stromal markers, and subsequent iLCM to selectively capture the cancer stroma compartments. The procedure was applied to 53 frozen specimens of human epithelial cancers. Sections were stained for histopathological evaluation, and RNA was isolated from adjacent serial sections. RNA quality was assessed by the Agilent-Bioanalyzer (Agilent, Palo Alto, CA) and by multiplex RT-PCR. Two thirds of the specimens were found to yield good to excellent RNA quality. For microdissection of the tumor stroma with reactive fibroblasts and tumor blood vessels, a rapid incubation protocol with antibodies against fibroblast activation protein (FAP) and against endosialin was developed to ensure RNA integrity for subsequent iLCM. Using these procedures, RNA from distinct tumor compartments can be isolated, analyzed, amplified, and used for transcription profiling.


Subject(s)
Carcinoma/diagnosis , Gelatinases/analysis , Membrane Proteins/analysis , Microdissection/methods , Neoplasm Proteins/analysis , RNA, Neoplasm/isolation & purification , Serine Endopeptidases/analysis , Antibodies, Neoplasm/immunology , Antigens, CD , Antigens, Neoplasm , Carcinoma/pathology , Endopeptidases , Frozen Sections , Gelatinases/immunology , Humans , Immunohistochemistry , Lasers , Membrane Proteins/immunology , Neoplasm Proteins/immunology , RNA, Neoplasm/analysis , Reverse Transcriptase Polymerase Chain Reaction , Serine Endopeptidases/immunology
12.
J Phys Chem A ; 110(1): 28-37, 2006 Jan 12.
Article in English | MEDLINE | ID: mdl-16392836

ABSTRACT

The photophysical properties of m- and p-cyano N-phenylpyrrole (m- and p-PBN) are compared. Both compounds show highly red-shifted and strongly forbidden emission in polar solvents, assigned to a charge transfer state. The forbidden nature is indicative of very weak coupling between the two pi-systems, and a twisted emissive structure is suggested (TICT state). Comparison to quantum chemical calculations indicates that the twisted structure possesses an antiquinoid distortion of the benzonitrile group, i.e., the central bonds in the ring are lengthened instead of shortened. m-PBN is the first meta compound which shows a CT emission assignable to a TICT state. It differs from p-PBN by a less exergonic formation of the CT state from the LE/ICT quinoid state. Consequently, it shows only single LE/ICT fluorescence in nonpolar alkane solvents, whereas p-PBN shows dual fluorescence in this solvent (LE/ICT and TICT).


Subject(s)
Pyrroles/chemistry , Computer Simulation , Photochemistry , Quantum Theory , Sensitivity and Specificity , Spectrometry, Fluorescence , Stereoisomerism , Temperature
13.
J Phys Chem A ; 110(1): 67-75, 2006 Jan 12.
Article in English | MEDLINE | ID: mdl-16392841

ABSTRACT

4-(Dimethylamino)-4'-cyano-1,4-diphenylbutadiene (DCB) and 4-(dimethylamino)-2,6-dimethyl-4'-cyano-1,4-diphenylbutadiene (DMDCB) have been characterized spectroscopically. Quantum chemical calculations were performed for comparison. Solvatochromic shifts of the fluorescence were strong and showed a linear dependence on the solvent polarity parameters, whereas shifts in the absorption spectra are very weak only correlate better with the polarizability of the solvents. Excited state dipole moments derived from fluorescence using the Onsager model are very large and similar for both compounds. It is concluded that a strongly allowed and highly dipolar pi, pi* state is the lowest excited state in polar solvents. The strong difference in absorption and fluorescence solvatochromic slopes suggests that the simple Onsager model with a point dipole approximation is not sufficient here.


Subject(s)
Polyenes/chemistry , Molecular Structure , Photochemistry , Quantum Theory , Sensitivity and Specificity , Solvents/chemistry , Spectrometry, Fluorescence/methods
14.
Cancer Immun ; 5: 10, 2005 Aug 03.
Article in English | MEDLINE | ID: mdl-16076089

ABSTRACT

Standardized, high-throughput RNA detection with microarray chips allows for the construction of genome-wide databases for tissue specimens suitable for in silico electronic Northern blot (eNorthern) analysis of marker genes. We used the BioExpress database, which contains transcriptional profiles of normal and cancer samples, to examine two putative markers of cancer stroma: fibroblast activation protein-alpha (FAP-alpha) and endosialin. Analyses for FAP-alpha showed that normal tissues generally lack RNA signals, with the exception of endometrium. Typing of tumors revealed prominent FAP-alpha signals in cancer types marked by desmoplasia, and localization of FAP-alpha in reactive cancer stroma was confirmed by immunohistochemistry. A subset of sarcomas displayed prominent FAP-alpha signals localizing to the malignant cells. For endosialin, eNorthern analyses showed low to moderate RNA signals in many normal organs, whereas immunohistochemistry revealed endosialin in only some tissues, such as endometrium. Endosialin was detected at the RNA and protein level in sarcomas, notably malignant fibrous histiocytomas. Low to moderate endosialin RNA signals were found in epithelial cancer types for which immunostaining identifies expression in subsets of tumor capillaries or fibroblasts. These findings extend the FAP-alpha and endosialin profiling in silico to an unbiased tumor database and place both molecules in a novel context of endometrial biology and sarcoma subtyping. Our findings suggest that BioExpress can be searched directly for tumor stroma markers but may need prior enrichment for markers with narrow cellular representation, such as endosialin. Constructing databases from microdissected cancer tissues may be an essential step for tumor stroma-targeted therapies.


Subject(s)
Antigens, Neoplasm/analysis , Biomarkers, Tumor/analysis , Databases, Genetic , Membrane Proteins/analysis , Neoplasm Proteins/analysis , Serine Endopeptidases/analysis , Adult , Antigens, CD , Antigens, Neoplasm/genetics , Biomarkers, Tumor/genetics , Endopeptidases , Female , Gelatinases , Gene Expression Profiling , Gene Expression Regulation/genetics , Humans , Membrane Proteins/genetics , Neoplasm Proteins/genetics , RNA, Neoplasm/analysis , Serine Endopeptidases/genetics , Up-Regulation
15.
J Org Chem ; 70(17): 6583-91, 2005 Aug 19.
Article in English | MEDLINE | ID: mdl-16095274

ABSTRACT

This report deals with the synthesis and the spectroscopic properties of two second generation (G2) dendrons with site-specific incorporated phenyl pyrene derivatives as solvatochromic fluorescent probes. The generations that do not carry the probe are equipped with volume dummies, pyrene moieties that do not show a solvatochromic effect. Two complementary G2 phenylene alkylene dendrons were synthesized using Suzuki-Miyaura cross coupling. Most of the reactions used in the 10-step sequence generating the target compounds proceeded in good yields. The incorporated probes can be selectively photoexcited and show solvatochromic shifts that are of the same magnitude as for the free probes in a homogeneous solvent environment. In addition to the charge-transfer fluorescence, a broad emission band is observed that is assigned to an intramolecular exciplex formation between the aryl pyrene chromophores.

16.
J Phys Chem A ; 109(4): 576-85, 2005 Feb 03.
Article in English | MEDLINE | ID: mdl-16833382

ABSTRACT

The fluorescence spectrum of PBN in a neat argon matrix is excitation-wavelength-dependent: at short excitation wavelengths, it consists of dual emission assigned to a charge-transfer (CT) state and a much weaker band assigned to the locally excited (LE) state. The CT emission is broad and almost completely devoid of vibrational structure, whereas the LE band is characterized by vibrationally resolved emission. At long excitation wavelengths, only CT emission is observed, indicating that the CT state is populated directly by light absorption and not via the LE state. Comparison with jet-cooled spectra of the bare molecule allows the unambiguous assignment of the LE spectrum and the location of the 0,0 band. The matrix LE emission spectrum is blue-shifted with respect to that of the gas phase, showing that the dipole moment of the LE state is smaller than that of the ground state. The fluorescence spectrum of PBN in an argon matrix does not change appreciably when acetonitrile (AN) is added to the matrix, in contrast to the case of N-phenylpyrrol (PP) (Schweke, D.; Haas, Y. J. Phys. Chem. A 2003, 107, 9554), for which addition of AN results in the appearance of two well separated emission bands. The different photophysical behaviors of PP and PBN in an argon matrix (and in supersonic jets) are analyzed by a simple model that considers the restriction of large-amplitude motions in the matrix. The implications of these low-temperature studies for understanding the properties of these systems in liquid solution are discussed.

17.
J Phys Chem A ; 109(29): 6420-9, 2005 Jul 28.
Article in English | MEDLINE | ID: mdl-16833986

ABSTRACT

Absorption and emission properties of DMABN-F4, the tetrafluoro analogue of DMABN, have been investigated and compared with the parent compound. Unlike in DMABN, this new compound exhibits only a highly solvatochromic and strongly red-shifted charge transfer (CT) fluorescence and is characterized by the absence of an LE band even in nonpolar solvents. This evidences the faster formation of CT in the excited state as compared to DMABN. The low quantum yield values of DMABN-F4 suggest that the high rate of nonradiative decay takes place via internal conversion (IC) rather than intersystem crossing (ISC) as no phosphorescence is observed in rigid glass solvents at 77 K in contrast to DMABN. The emission transition moment and radiative rate constant values of DMABN-F4 in medium and highly polar solvents point to a forbidden emission in the excited state similar to that of DMABN. Electronic structure and twist potentials were also studied by quantum chemical calculations using ab initio and semiempirical methods. In contrast to DMABN, the dimethylamino group in DMABN-F4 is found to be twisted by around 30-50 degrees, but the photophysics are concluded to be analogous to DMABN with the addition of a very fast IC channel.

18.
J Phys Chem B ; 109(39): 18699-705, 2005 Oct 06.
Article in English | MEDLINE | ID: mdl-16853405

ABSTRACT

Selectively bridged model compounds related to the chromophore in photoactive yellow protein have been synthesized where the single bond adjacent to the benzene ring (bond 1) and where both bond 1 and the adjacent double bond (bond 2) are bridged. They were compared to the nonbridged reference compound regarding their photophysical properties using steady-state and time-resolved fluorescence at various temperatures. Quantum chemical calculations were additionally performed and showed that several conformers are populated in the ground state. The neutral model compounds show that the nonradiative deactivation channel is linked to both single- and double-bond twisting. The relative importance of single-bond twisting is increased for the corresponding deprotonated hydroxy compounds with an enhanced donor character. The simultaneous photochemical activity of both single and double bonds explains the ease of photochemical isomerization in the confined environment of the natural PYP protein and also of the primary step in the vision process in rhodopsin.


Subject(s)
Bacterial Proteins/chemistry , Molecular Probes , Photoreceptors, Microbial/chemistry , Fluorescence , Models, Molecular , Photochemistry , Quantum Theory , Spectrum Analysis/methods , Temperature
19.
Faraday Discuss ; 127: 23-33, 2004.
Article in English | MEDLINE | ID: mdl-15471337

ABSTRACT

4-(N-pyrrolidinyl)benzonitrile and 4-(N-pyrrolyl)benzonitrile were excited by an ultrashort pulse at 270 nm to their La (S2) states and then probed by ionization at long wavelengths. Parent and fragment ion signals show components with time constants < 100 fs which we attribute to ultrafast relaxation to the Lb (S1) state. From this short time we infer a conical intersection between the Lb and La surfaces. The wave packet can branch there, one part going temporarily to a strongly displaced state. Its shift was concluded from an anisotropy observed only there. The only excited state known to have a large displacement is the charge-transfer (CT) state. The positive anisotropy indicates that the CT state belongs to the 2A species for both molecules. For pyrrolylbenzonitrile, this is in contrast to previous assignments. The anisotropy, and a coherent oscillation observed in pyrrolidinylbenzonitrile, support the idea that the amino-group twist is an important component of the CT reaction coordinate.

20.
Photochem Photobiol Sci ; 3(10): 939-48, 2004 Oct.
Article in English | MEDLINE | ID: mdl-15480485

ABSTRACT

Amino-diphenylanilines and their planarized and twisted model compounds have been investigated by steady state and time-resolved absorption and emission, as well as by spectroelectrochemistry. These polyaniline model compounds show that the observation of excited states with full charge separation is linked to molecular twisting where the diaminobenzene is the donor and the phenyl group the acceptor. The observable charge transfer fluorescence shows the characteristic features of twisted intramolecular charge transfer (TICT) excited states, i.e. forbidden emissive properties and strong solvatochromic red shift. The transient absorption spectrum of the TICT state matches the ground state absorption spectrum of the electrochemically produced radical cation of the molecule. This is the first example where excited-state properties of the neutral and ground state properties of the radical cation are directly linked.


Subject(s)
Aniline Compounds/chemistry , Phenylenediamines/chemistry , Electrochemistry/methods , Electronics , Hydrogen-Ion Concentration , Models, Chemical , Molecular Structure , Optics and Photonics , Oxidation-Reduction , Spectrometry, Fluorescence/methods , Spectrophotometry, Atomic/methods , Time Factors
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