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1.
Res Sq ; 2024 Mar 18.
Article in English | MEDLINE | ID: mdl-38562878

ABSTRACT

The germinal center (GC) dark zone (DZ) and light zone (LZ) regions spatially separate expansion and diversification from selection of antigen-specific B-cells to ensure antibody affinity maturation and B cell memory. The DZ and LZ differ significantly in their immune composition despite the lack of a physical barrier, yet the determinants of this polarization are poorly understood. This study provides novel insights into signals controlling asymmetric T-cell distribution between DZ and LZ regions. We identify spatially-resolved DNA damage response and chromatin compaction molecular features that underlie DZ T-cell exclusion. The DZ spatial transcriptional signature linked to T-cell immune evasion clustered aggressive Diffuse Large B-cell Lymphomas (DLBCL) for differential T cell infiltration. We reveal the dependence of the DZ transcriptional core signature on the ATR kinase and dissect its role in restraining inflammatory responses contributing to establishing an immune-repulsive imprint in DLBCL. These insights may guide ATR-focused treatment strategies bolstering immunotherapy in tumors marked by DZ transcriptional and chromatin-associated features.

2.
Cancer Res ; 84(1): 101-117, 2024 01 02.
Article in English | MEDLINE | ID: mdl-37801604

ABSTRACT

Exportin-1 (XPO1), the main soluble nuclear export receptor in eukaryotic cells, is frequently overexpressed in diffuse large B-cell lymphoma (DLBCL). A selective XPO1 inhibitor, selinexor, received approval as single agent for relapsed or refractory (R/R) DLBCL. Elucidating the mechanisms by which XPO1 overexpression supports cancer cells could facilitate further clinical development of XPO1 inhibitors. We uncovered here that XPO1 overexpression increases tolerance to genotoxic stress, leading to a poor response to chemoimmunotherapy. Upon DNA damage induced by MYC expression or exogenous compounds, XPO1 bound and exported EIF4E and THOC4 carrying DNA damage repair mRNAs, thereby increasing synthesis of DNA damage repair proteins under conditions of increased turnover. Consequently, XPO1 inhibition decreased the capacity of lymphoma cells to repair DNA damage and ultimately resulted in increased cytotoxicity. In a phase I clinical trial conducted in R/R DLBCL, the combination of selinexor with second-line chemoimmunotherapy was tolerated with early indication of efficacy. Overall, this study reveals that XPO1 overexpression plays a critical role in the increased tolerance of cancer cells to DNA damage while providing new insights to optimize the clinical development of XPO1 inhibitors. SIGNIFICANCE: XPO1 regulates the dynamic ribonucleoprotein nuclear export in response to genotoxic stress to support tolerance and can be targeted to enhance the sensitivity of cancer cells to endogenous and exogenous DNA damage. See related commentary by Knittel and Reinhardt, p. 3.


Subject(s)
Lymphoma, Large B-Cell, Diffuse , Lymphoma, Non-Hodgkin , Humans , Active Transport, Cell Nucleus , Karyopherins/metabolism , Cell Line, Tumor , Hydrazines/pharmacology , Receptors, Cytoplasmic and Nuclear/genetics , Receptors, Cytoplasmic and Nuclear/metabolism , DNA Damage , Lymphoma, Non-Hodgkin/drug therapy , Lymphoma, Large B-Cell, Diffuse/drug therapy , RNA, Messenger/genetics , RNA, Messenger/metabolism
3.
Nat Med ; 29(3): 632-645, 2023 03.
Article in English | MEDLINE | ID: mdl-36928817

ABSTRACT

The historical lack of preclinical models reflecting the genetic heterogeneity of multiple myeloma (MM) hampers the advance of therapeutic discoveries. To circumvent this limitation, we screened mice engineered to carry eight MM lesions (NF-κB, KRAS, MYC, TP53, BCL2, cyclin D1, MMSET/NSD2 and c-MAF) combinatorially activated in B lymphocytes following T cell-driven immunization. Fifteen genetically diverse models developed bone marrow (BM) tumors fulfilling MM pathogenesis. Integrative analyses of ∼500 mice and ∼1,000 patients revealed a common MAPK-MYC genetic pathway that accelerated time to progression from precursor states across genetically heterogeneous MM. MYC-dependent time to progression conditioned immune evasion mechanisms that remodeled the BM microenvironment differently. Rapid MYC-driven progressors exhibited a high number of activated/exhausted CD8+ T cells with reduced immunosuppressive regulatory T (Treg) cells, while late MYC acquisition in slow progressors was associated with lower CD8+ T cell infiltration and more abundant Treg cells. Single-cell transcriptomics and functional assays defined a high ratio of CD8+ T cells versus Treg cells as a predictor of response to immune checkpoint blockade (ICB). In clinical series, high CD8+ T/Treg cell ratios underlie early progression in untreated smoldering MM, and correlated with early relapse in newly diagnosed patients with MM under Len/Dex therapy. In ICB-refractory MM models, increasing CD8+ T cell cytotoxicity or depleting Treg cells reversed immunotherapy resistance and yielded prolonged MM control. Our experimental models enable the correlation of MM genetic and immunological traits with preclinical therapy responses, which may inform the next-generation immunotherapy trials.


Subject(s)
Multiple Myeloma , Mice , Animals , Multiple Myeloma/therapy , Multiple Myeloma/drug therapy , CD8-Positive T-Lymphocytes , Immune Evasion , T-Lymphocytes, Regulatory , Immunotherapy/adverse effects , Tumor Microenvironment/genetics
4.
EMBO J ; 42(7): e110496, 2023 04 03.
Article in English | MEDLINE | ID: mdl-36843541

ABSTRACT

Aberrant splicing is typically attributed to splice-factor (SF) mutation and contributes to malignancies including acute myeloid leukemia (AML). Here, we discovered a mutation-independent means to extensively reprogram alternative splicing (AS). We showed that the dysregulated expression of eukaryotic translation initiation factor eIF4E elevated selective splice-factor production, thereby impacting multiple spliceosome complexes, including factors mutated in AML such as SF3B1 and U2AF1. These changes generated a splicing landscape that predominantly supported altered splice-site selection for ~800 transcripts in cell lines and ~4,600 transcripts in specimens from high-eIF4E AML patients otherwise harboring no known SF mutations. Nuclear RNA immunoprecipitations, export assays, polysome analyses, and mutational studies together revealed that eIF4E primarily increased SF production via its nuclear RNA export activity. By contrast, eIF4E dysregulation did not induce known SF mutations or alter spliceosome number. eIF4E interacted with the spliceosome and some pre-mRNAs, suggesting its direct involvement in specific splicing events. eIF4E induced simultaneous effects on numerous SF proteins, resulting in a much larger range of splicing alterations than in the case of mutation or dysregulation of individual SFs and providing a novel paradigm for splicing control and dysregulation.


Subject(s)
Alternative Splicing , Leukemia, Myeloid, Acute , Humans , RNA Splicing Factors/metabolism , Eukaryotic Initiation Factor-4E/metabolism , RNA Splicing , Eukaryotic Initiation Factors/genetics , Leukemia, Myeloid, Acute/genetics , Mutation
5.
Blood ; 141(18): 2194-2205, 2023 05 04.
Article in English | MEDLINE | ID: mdl-36796016

ABSTRACT

Peripheral T-cell lymphomas (PTCL) with T-follicular helper phenotype (PTCL-TFH) has recurrent mutations affecting epigenetic regulators, which may contribute to aberrant DNA methylation and chemoresistance. This phase 2 study evaluated oral azacitidine (CC-486) plus cyclophosphamide, doxorubicin, vincristine, and prednisone (CHOP) as initial treatment for PTCL. CC-486 at 300 mg daily was administered for 7 days before C1 of CHOP, and for 14 days before CHOP C2-6. The primary end point was end-of-treatment complete response (CR). Secondary end points included safety and survival. Correlative studies assessed mutations, gene expression, and methylation in tumor samples. Grade 3 to 4 hematologic toxicities were mostly neutropenia (71%), with febrile neutropenia uncommon (14%). Nonhematologic toxicities included fatigue (14%) and gastrointestinal symptoms (5%). In 20 evaluable patients, CR was 75%, including 88.2% for PTCL-TFH (n = 17). The 2-year progression-free survival (PFS) was 65.8% for all and 69.2% for PTCL-TFH, whereas 2-year overall survival (OS) was 68.4% for all and 76.1% for PTCL-TFH. The frequencies of the TET2, RHOA, DNMT3A, and IDH2 mutations were 76.5%, 41.1%, 23.5%, and 23.5%, respectively, with TET2 mutations significantly associated with CR (P = .007), favorable PFS (P = .004) and OS (P = .015), and DNMT3A mutations associated with adverse PFS (P = .016). CC-486 priming contributed to the reprograming of the tumor microenvironment by upregulation of genes related to apoptosis (P < .01) and inflammation (P < .01). DNA methylation did not show significant shift. This safe and active regimen is being further evaluated in the ALLIANCE randomized study A051902 in CD30-negative PTCL. This trial was registered at www.clinicaltrials.gov as #NCT03542266.


Subject(s)
Lymphoma, T-Cell, Peripheral , Humans , Lymphoma, T-Cell, Peripheral/pathology , Azacitidine/adverse effects , Doxorubicin , Prednisone/adverse effects , Vincristine , Cyclophosphamide/adverse effects , Immunologic Factors/therapeutic use , Antineoplastic Combined Chemotherapy Protocols/adverse effects , Tumor Microenvironment
6.
Mol Cancer Ther ; 21(9): 1485-1496, 2022 09 06.
Article in English | MEDLINE | ID: mdl-35793463

ABSTRACT

Bexarotene is a specific retinoid X receptor agonist that has been used for the treatment of cutaneous T-cell lymphoma (CTCL). Because bexarotene causes hypothyroidism, it requires the administration of levothyroxine. However, levothyroxine, in addition to its ubiquitous nuclear receptors, can activate the αVß3 integrin that is overexpressed in CTCL, potentially interfering the antineoplastic effect of bexarotene. We thus investigated the biological effect of levothyroxine in relation to bexarotene treatment. Although in isolated CTCL cells levothyroxine decreased, in an αVß3-dependent manner, the antineoplastic effect of bexarotene, levothyroxine supplementation in preclinical models was necessary to avoid suppression of lymphoma immunity. Accordingly, selective genetic and pharmacologic inhibition of integrin αVß3 improved the antineoplastic effect of bexarotene plus levothyroxine replacement while maintaining lymphoma immunity. Our results provide a mechanistic rationale for clinical testing of integrin αVß3 inhibitors as part of CTCL regimens based on bexarotene administration. TEASER: Inhibiting αVß3 integrin improves the antineoplastic effect of bexarotene while maintaining lymphoma immunity.


Subject(s)
Anticarcinogenic Agents , Antineoplastic Agents , Lymphoma, T-Cell, Cutaneous , Skin Neoplasms , Anticarcinogenic Agents/pharmacology , Anticarcinogenic Agents/therapeutic use , Antineoplastic Agents/pharmacology , Antineoplastic Agents/therapeutic use , Bexarotene/pharmacology , Bexarotene/therapeutic use , Humans , Integrin alphaVbeta3 , Lymphoma, T-Cell, Cutaneous/drug therapy , Lymphoma, T-Cell, Cutaneous/pathology , Skin Neoplasms/pathology , Tetrahydronaphthalenes/pharmacology , Tetrahydronaphthalenes/therapeutic use , Thyroxine/therapeutic use
7.
Article in English | MEDLINE | ID: mdl-35409566

ABSTRACT

Establishing new models of health care and new forms of professional health-patient communication are lines of development in the field of health care. The onset of the COVID-19 pandemic has accelerated the evolution of information systems and communication platforms to guarantee continuity of care and compliance with social distancing measures. Our objective in this article was, firstly, to know the expectations of patients treated in the healthcare processes "cervical cancer" and "pregnancy, childbirth and puerperium" regarding online access to their clinical history and follow-up in the care process. Secondly, we analyzed times involved in the cervical cancer process to find points of improvement in waiting times when digital tools were used for communication with the patient. A descriptive cross-sectional study was carried out on 120 women included in any of the aforementioned processes using a hetero-administered questionnaire. The analysis of times was carried out using the Business Intelligence tool Biwer Analytics®. Patients showed interest in knowing their results before the appointment with the doctor and would avoid appointments with their doctor if the right conditions were met. Most recognized that this action would relieve their restlessness and anxiety. They were highly interested in receiving recommendations to improve their health status. It was estimated that there was room for improvement in the times involved in the care process, which could be shortened by 34.48 days if communication of results were through digital information access technologies. This would favor the optimization of time, resources and user perception.


Subject(s)
COVID-19 , Telemedicine , COVID-19/epidemiology , Cross-Sectional Studies , Female , Humans , Pandemics , Perception
8.
Int J Mol Sci ; 23(3)2022 Jan 26.
Article in English | MEDLINE | ID: mdl-35163302

ABSTRACT

The discovery of the human histamine H4 receptor (H4R) has contributed to our understanding of the role of histamine in numerous physiological and pathological conditions, including tumor development and progression. The lymph nodes of patients with malignant lymphomas have shown to contain high levels of histamine, however, less is known regarding the expression and function of the H4R in T-cell lymphoma (TCL). In this work we demonstrate the expression of H4R isoforms (mRNA and protein) in three human aggressive TCL (OCI-Ly12, Karpas 299, and HuT78). Histamine and specific H4R agonists (VUF8430 and JNJ28610244) significantly reduced cell viability in a dose-dependent manner (p < 0.05). The combined treatment with the H4R antagonist (JNJ7777120, 10 µM) reversed the effects of the H4R ligands. Importantly, we screened a drug repurposing library of 433 FDA-approved compounds (1 µM) in combination with histamine (10 µM) in Hut78 cells. Histamine produced a favorable antitumor effect with 18 of these compounds, including the histone deacetylase inhibitor panobinostat. Apoptosis, proliferation, and oxidative stress studies confirmed the antitumoral effects of the combination. We conclude that the H4R is expressed in TCL, and it is involved in histamine-mediated responses.


Subject(s)
Antineoplastic Agents/pharmacology , Histamine Agonists/pharmacology , Lymphoma, T-Cell/drug therapy , Receptors, Histamine H4/metabolism , Apoptosis/drug effects , Cell Line , Cell Line, Tumor , Cell Proliferation/drug effects , HEK293 Cells , Histamine/metabolism , Histamine Antagonists/pharmacology , Humans , Lymphoma, T-Cell/metabolism , Oxidative Stress/drug effects
9.
Blood ; 139(8): 1147-1159, 2022 02 24.
Article in English | MEDLINE | ID: mdl-34428285

ABSTRACT

Resistance to standard immunochemotherapy remains an unmet challenge in diffuse large B-cell lymphoma (DLBCL), and aberrant DNA methylation may contribute to chemoresistance. Promising early-phase results were reported with rituximab, cyclophosphamide, doxorubicin, vincristine, and prednisone (R-CHOP) plus subcutaneous azacitidine, a hypomethylating agent. In this phase 1 study, we evaluated CC-486 (oral azacitidine) plus 6 cycles of R-CHOP in patients with previously untreated intermediate- to high-risk DLBCL or grade 3B/transformed follicular lymphoma. CC-486 doses of 100, 150, 200, or 300 mg given 7 days before cycle 1 and on days 8-21 of cycles 1-5 were evaluated; additional patients were enrolled in the expansion phase to examine preliminary efficacy. The primary objectives were to determine the safety and the maximum tolerated dose (MTD) of CC-486 in combination with R-CHOP. The most common grade 3/4 toxicities were hematologic, including neutropenia (62.7%) and febrile neutropenia (25.4%); grade 3/4 nonhematologic toxicities were uncommon (<7%). The MTD was not established; 2 patients had dose-limiting toxicities (1 with grade 4 febrile neutropenia; 1 with grade 4 prolonged neutropenia). The recommended phase 2 dose was established as 300 mg. The overall response rate was 94.9%, with 52 patients (88.1%) achieving complete responses. With a median follow-up of 28.9 months, estimated 1- and 2-year progression-free survival rates were 84.1% and 78.6%, respectively. Overall, epigenetic priming with CC-486 before R-CHOP can be delivered with acceptable safety to patients with previously untreated intermediate- to high-risk DLBCL or grade 3B/transformed follicular lymphoma. ClinicalTrials.gov: NCT02343536.


Subject(s)
Antineoplastic Combined Chemotherapy Protocols/administration & dosage , Azacitidine/administration & dosage , Lymphoma, Large B-Cell, Diffuse/drug therapy , Lymphoma, Large B-Cell, Diffuse/mortality , Administration, Oral , Adult , Aged , Aged, 80 and over , Antineoplastic Combined Chemotherapy Protocols/adverse effects , Azacitidine/adverse effects , Cyclophosphamide/administration & dosage , Cyclophosphamide/adverse effects , Disease-Free Survival , Doxorubicin/administration & dosage , Doxorubicin/adverse effects , Female , Follow-Up Studies , Humans , Male , Maximum Tolerated Dose , Middle Aged , Prednisone/administration & dosage , Prednisone/adverse effects , Risk Factors , Rituximab/administration & dosage , Rituximab/adverse effects , Survival Rate , Vincristine/administration & dosage , Vincristine/adverse effects
10.
Sci Adv ; 7(45): eabg1964, 2021 Nov 05.
Article in English | MEDLINE | ID: mdl-34739311

ABSTRACT

Selected patients with brain metastases (BM) are candidates for radiotherapy. A lactatogenic metabolism, common in BM, has been associated with radioresistance. We demonstrated that BM express nitric oxide (NO) synthase 2 and that administration of its substrate l-arginine decreases tumor lactate in BM patients. In a placebo-controlled trial, we showed that administration of l-arginine before each fraction enhanced the effect of radiation, improving the control of BM. Studies in preclinical models demonstrated that l-arginine radiosensitization is a NO-mediated mechanism secondary to the metabolic adaptation induced in cancer cells. We showed that the decrease in tumor lactate was a consequence of reduced glycolysis that also impacted ATP and NAD+ levels. These effects were associated with NO-dependent inhibition of GAPDH and hyperactivation of PARP upon nitrosative DNA damage. These metabolic changes ultimately impaired the repair of DNA damage induced by radiation in cancer cells while greatly sparing tumor-infiltrating lymphocytes.

11.
Cancer Res ; 81(20): 5202-5216, 2021 10 15.
Article in English | MEDLINE | ID: mdl-34479963

ABSTRACT

HSP90 is critical for maintenance of the cellular proteostasis. In cancer cells, HSP90 also becomes a nucleating site for the stabilization of multiprotein complexes including signaling pathways and transcription complexes. Here we described the role of this HSP90 form, referred to as oncogenic HSP90, in the regulation of cytosolic metabolic pathways in proliferating B-cell lymphoma cells. Oncogenic HSP90 assisted in the organization of metabolic enzymes into non-membrane-bound functional compartments. Under experimental conditions that conserved cellular proteostasis, oncogenic HSP90 coordinated and sustained multiple metabolic pathways required for energy production and maintenance of cellular biomass as well as for secretion of extracellular metabolites. Conversely, inhibition of oncogenic HSP90, in absence of apparent client protein degradation, decreased the efficiency of MYC-driven metabolic reprogramming. This study reveals that oncogenic HSP90 supports metabolism in B-cell lymphoma cells and patients with diffuse large B-cell lymphoma, providing a novel mechanism of activity for HSP90 inhibitors. SIGNIFICANCE: The oncogenic form of HSP90 organizes and maintains functional multienzymatic metabolic hubs in cancer cells, suggesting the potential of repurposing oncogenic HSP90 selective inhibitors to disrupt metabolism in lymphoma cells.


Subject(s)
Carcinogenesis/pathology , HSP90 Heat-Shock Proteins/metabolism , Lymphoma, Large B-Cell, Diffuse/metabolism , Lymphoma, Large B-Cell, Diffuse/pathology , Metabolome , Proteolysis , Proto-Oncogene Proteins c-myc/metabolism , Animals , Carcinogenesis/metabolism , Case-Control Studies , HSP90 Heat-Shock Proteins/genetics , Humans , Lymphoma, Large B-Cell, Diffuse/genetics , Mice , Protein Interaction Domains and Motifs , Proto-Oncogene Proteins c-myc/genetics , Signal Transduction , Tumor Cells, Cultured
12.
Arch. med. deporte ; 38(205): 312-318, Sep. 2021. tab, graf
Article in English, Spanish | IBECS | ID: ibc-218182

ABSTRACT

Objetivo: Evaluar los cambios morfológicos de boxeadores superpesados cubanos, más y menos exitosos, a través del período 1976-2014.Material y método: Treinta boxeadores superpesados, los cuales fueron miembros de las selecciones nacionales de Cuba en el periodo 1976-2014 fueron comparados; la estrategia consistió en separar el grupo en los periodos 1976-1989,1990-1999, 2000-2009 y 2010-2014. Se registraron 16 dimensiones antropométricas (peso, estatura, estatura sentada, seis panículos adi­posos, cinco perímetros y dos diámetros óseos), a partir de las cuales fue obtenida la composición corporal y el somatotipo. Las comparaciones fueron realizadas aplicando un Análisis de varianza (ANOVA). Fue empleado el análisis de conglomerado basado en la distancia euclidiana con el objetivo de evaluar la correspondencia entre el desarrollo físico y el resultado de­portivo. Un análisis discriminante fue realizado con el objetivo de analizar la contribución de las variables antropométricas a la varianza de los diferentes clústeres.Resultados: La mayoría de las dimensiones antropométricas e indicadores mostraron diferencias significativas, repercu­tiendo en el aumento de la adiposidad, grasa corporal y la endomorfia (p<0,05), así como la disminución de los indicadores dependientes de la estatura (p<0,05). El análisis por conglomerados, así el estudio de las Distancias Migratorias del somatotipo arrojaron que los boxeadores medallistas olímpicos se diferenciaron en cuanto a las características de la composición corporal y en cuanto a la intensidad de los cambios del somatotipo en el periodo 1976-2014.Conclusiones: El boxeador cubano de la categoría superpesado mostró un amplio rango de demandas morfológicas, pero estas se enmarcaron dentro de las tendencias internacionales de boxeadores profesionales.(AU)


Objective: To evaluate the morphological changes of Cuban super heavyweight boxers, more and less successful, through the period 1976-2014.Material and method: Thirty super heavy boxers, who were members of the Cuban national teams in the period 1976-2014, were compared; The strategy consisted of separating the group in the periods 1976-1989, 1990-1999, 2000-2009 and 2010- 2014. Sixteen anthropometric dimensions were recorded (weight, height, sitting height, six skinfold thickness, five girths and two breadths), from which the body composition and the somatotype were obtained. The data were analyzed applying the Analysis of variance (ANOVA). The conglomerate analysis based on the Euclidean distance was used in order to evaluate the correspondence between physical development and sports performance. A discriminant analysis was carried out in order to analyze the contribution of the anthropometrical variables to the variance of different clusters.Results: Most of the anthropometric dimensions and indicators showed significant differences, having an impact on the increase in adiposity, body fat and endomorphy (p <0.05), as well as the decrease in the indicators dependent on height (p <0.05). The analysis by conglomerates, as well as the study of the Migratory Distances of the somatotype, showed that the Olympic medalist boxers differed in terms of the characteristics of body composition and in terms of the intensity of the somatotype changes in the period 1976-2014.Conclusions: The Cuban boxer of the super heavyweight category showed a wide range of morphological demands, but these were framed within the international trends of professional boxers. The morphological attributes of the Olympic medalists differed from each other, and from the rest of the boxers investigated over time. These results provide anthropometric data of high scientific value, both for selection and for medical control of training.(AU)


Subject(s)
Humans , Male , Boxing , Anthropometry , Athletes , Body Composition , Somatotypes , Sports Medicine , Cuba , Epidemiology, Descriptive , Retrospective Studies , Longitudinal Studies
13.
Cancer Discov ; 11(6): 1468-1489, 2021 06.
Article in English | MEDLINE | ID: mdl-33541860

ABSTRACT

Diffuse large B-cell lymphoma (DLBCL) is a biologically and clinically heterogeneous disease. Transcriptomic and genetic characterization of DLBCL has increased the understanding of its intrinsic pathogenesis and provided potential therapeutic targets. However, the role of the microenvironment in DLBCL biology remains less understood. Here, we performed a transcriptomic analysis of the microenvironment of 4,655 DLBCLs from multiple independent cohorts and described four major lymphoma microenvironment categories that associate with distinct biological aberrations and clinical behavior. We also found evidence of genetic and epigenetic mechanisms deployed by cancer cells to evade microenvironmental constraints of lymphoma growth, supporting the rationale for implementing DNA hypomethylating agents in selected patients with DLBCL. In addition, our work uncovered new therapeutic vulnerabilities in the biochemical composition of the extracellular matrix that were exploited to decrease DLBCL proliferation in preclinical models. This novel classification provides a road map for the biological characterization and therapeutic exploitation of the DLBCL microenvironment. SIGNIFICANCE: In a translational relevant transcriptomic-based classification, we characterized the microenvironment as a critical component of the B-cell lymphoma biology and associated it with the DLBCL clinical behavior establishing a novel opportunity for targeting therapies.This article is highlighted in the In This Issue feature, p. 1307.


Subject(s)
Lymphoma, Large B-Cell, Diffuse/genetics , Gene Expression Profiling , Humans , Lymphoma, Large B-Cell, Diffuse/pathology , Tumor Microenvironment
14.
Gut ; 70(3): 555-566, 2021 03.
Article in English | MEDLINE | ID: mdl-32641470

ABSTRACT

OBJECTIVE: Patients with Lynch syndrome (LS) are at markedly increased risk for colorectal cancer. It is being increasingly recognised that the immune system plays an essential role in LS tumour development, thus making an ideal target for cancer prevention. Our objective was to evaluate the safety, assess the activity and discover novel molecular pathways involved in the activity of naproxen as primary and secondary chemoprevention in patients with LS. DESIGN: We conducted a Phase Ib, placebo-controlled, randomised clinical trial of two dose levels of naproxen sodium (440 and 220 mg) administered daily for 6 months to 80 participants with LS, and a co-clinical trial using a genetically engineered mouse model of LS and patient-derived organoids (PDOs). RESULTS: Overall, the total number of adverse events was not different across treatment arms with excellent tolerance of the intervention. The level of prostaglandin E2 in the colorectal mucosa was significantly decreased after treatment with naproxen when compared with placebo. Naproxen activated different resident immune cell types without any increase in lymphoid cellularity, and changed the expression patterns of the intestinal crypt towards epithelial differentiation and stem cell regulation. Naproxen demonstrated robust chemopreventive activity in a mouse co-clinical trial and gene expression profiles induced by naproxen in humans showed perfect discrimination of mice specimens with LS and PDOs treated with naproxen and control. CONCLUSIONS: Naproxen is a promising strategy for immune interception in LS. We have discovered naproxen-induced gene expression profiles for their potential use as predictive biomarkers of drug activity. TRIAL REGISTRATION NUMBER: gov Identifier: NCT02052908.


Subject(s)
Anti-Inflammatory Agents, Non-Steroidal/pharmacology , Chemoprevention , Colorectal Neoplasms, Hereditary Nonpolyposis/drug therapy , Colorectal Neoplasms, Hereditary Nonpolyposis/immunology , Naproxen/pharmacology , Adult , Aged , Animals , Anti-Inflammatory Agents, Non-Steroidal/administration & dosage , Dinoprostone/metabolism , Disease Models, Animal , Female , Humans , Intestinal Mucosa/metabolism , Male , Mice , Middle Aged , Naproxen/administration & dosage
15.
Proc Natl Acad Sci U S A ; 117(43): 26773-26783, 2020 10 27.
Article in English | MEDLINE | ID: mdl-33055213

ABSTRACT

Methyl-7-guanosine (m7G) "capping" of coding and some noncoding RNAs is critical for their maturation and subsequent activity. Here, we discovered that eukaryotic translation initiation factor 4E (eIF4E), itself a cap-binding protein, drives the expression of the capping machinery and increased capping efficiency of ∼100 coding and noncoding RNAs. To quantify this, we developed enzymatic (cap quantification; CapQ) and quantitative cap immunoprecipitation (CapIP) methods. The CapQ method has the further advantage that it captures information about capping status independent of the type of 5' cap, i.e., it is not restricted to informing on m7G caps. These methodological advances led to unanticipated revelations: 1) Many RNA populations are inefficiently capped at steady state (∼30 to 50%), and eIF4E overexpression increased this to ∼60 to 100%, depending on the RNA; 2) eIF4E physically associates with noncoding RNAs in the nucleus; and 3) approximately half of eIF4E-capping targets identified are noncoding RNAs. eIF4E's association with noncoding RNAs strongly positions it to act beyond translation. Coding and noncoding capping targets have activities that influence survival, cell morphology, and cell-to-cell interaction. Given that RNA export and translation machineries typically utilize capped RNA substrates, capping regulation provides means to titrate the protein-coding capacity of the transcriptome and, for noncoding RNAs, to regulate their activities. We also discovered a cap sensitivity element (CapSE) which conferred eIF4E-dependent capping sensitivity. Finally, we observed elevated capping for specific RNAs in high-eIF4E leukemia specimens, supporting a role for cap dysregulation in malignancy. In all, levels of capping RNAs can be regulated by eIF4E.


Subject(s)
Eukaryotic Initiation Factor-4E/metabolism , Guanosine/analogs & derivatives , RNA Caps/metabolism , RNA, Messenger/metabolism , Cell Line, Tumor , Eukaryotic Initiation Factor-4E/chemistry , Eukaryotic Initiation Factor-4E/genetics , Guanosine/chemistry , Guanosine/genetics , Guanosine/metabolism , Humans , Polyribosomes/metabolism , RNA Caps/chemistry , RNA Caps/genetics , RNA, Messenger/chemistry , RNA, Messenger/genetics , Transcriptome/genetics
16.
Environ Sci Pollut Res Int ; 27(33): 41702-41716, 2020 Nov.
Article in English | MEDLINE | ID: mdl-32696403

ABSTRACT

The occurrence of local high-pollution episodes in densely populated urban areas, which have huge fleets of vehicles, is currently one of the most worrying problems associated with air pollution worldwide. Such episodes are produced under specific meteorological conditions, which favour the sudden increase of levels of air pollutants. This study has investigated the influence of the mixing layer height (MLH) on the concentration levels of atmospheric pollutants and daily mortality in Madrid, Spain, during the period 2011-2014. It may help to understand the causes and impact of local high-pollution episodes. MLH at midday over Madrid was daily estimated from meteorological radio soundings. Then, days with different MLH over this urban area were characterized by meteorological parameters registered at different levels of an instrumented tower and by composite sea level pressure maps, representing the associated synoptic meteorological scenarios. Next, statistically significant associations between MLH and levels of PM10, PM2.5, NO, NO2, CO and ultra-fine particles number concentrations registered at representative monitoring stations were evaluated. Finally, associations between all-natural cause daily mortality in Madrid, MLH, and air pollutants were estimated using conditional Poisson regression models. The reduction of MLH to values below 482 m above-ground level under strong atmospheric stagnation conditions was accompanied by a statistically significant increase in levels of NO, NO2, CO, PM2.5 and ultra-fine particle number concentrations at urban-traffic and suburban monitoring sites. The decrease of the MLH was also associated to a linear increase of the daily number of exceedances of the UE NO2 hourly limit value (200 µg/m3) and levels of air pollutants at hotspot urban-traffic monitoring stations. Also, a statistically significant association of the MLH with all-natural cause daily mortality was obtained. When the MLH increased by 830 m, the risk of mortality decreased by 2.5% the same day and by 3.3% the next day, when African dust episodic days were excluded. They were also higher in absolute terms than the increases in risk of mortality that were determined for the exposition to any other air pollutant. Our results suggest that when the prediction models foresee values of MLH below 482 m above-ground level in Madrid, the evolution of high-contamination episodes will be very favourable. Therefore, short-term policy measures will have to be implemented to reduce NO, NO2, CO, PM2.5 and ultra-fine particle emissions from anthropogenic sources in this southern European urban location.


Subject(s)
Air Pollutants , Air Pollution , Meteorology , Air Pollutants/analysis , Air Pollution/analysis , Environmental Monitoring , Particulate Matter/analysis , Spain
17.
Biochim Biophys Acta Mol Cell Res ; 1867(1): 118566, 2020 01.
Article in English | MEDLINE | ID: mdl-31672613

ABSTRACT

Nuclear-cytoplasmic trafficking of proteins is a highly regulated process that modulates multiple biological processes in eukaryotic cells. In Giardia lamblia, shuttling has been described from the cytoplasm to nuclei of proteins during the biological cell cycle of the parasite. This suggests that a mechanism of nucleocytoplasmic transport is present and functional in G. lamblia. By means of computational biology analyses, we found that there are only two genes for nuclear transport in this parasite, named Importin α and Importin ß. When these transporters were overexpressed, both localized close to the nuclear envelope, and no change was observed in trophozoite growth rate. However, during the encystation process, both transporters induced an increase in the number of cysts produced. Importazole and Ivermectin, two known specific inhibitors of importins, separately influenced the encysting process by inducing an arrest in the trophozoite stage that prevents the production of cysts. This effect was more noticeable when Ivermectin, an anti-parasitic drug, was used. Finally, we tested whether the enzyme arginine deiminase, which shuttles from the cytoplasm to the nuclei during encystation, was influenced by these transporters. We found that treatment with each of the inhibitors abrogates arginine deiminase nuclear translocation and favors perinuclear localization. This suggests that Importin α and Importin ß are key transporters during the encystation process and are involved, at least, in the transport of arginine deiminase into the nuclei. Considering the effect produced by Ivermectin during growth and encystation, we postulate that this drug could be used to treat giardiasis.


Subject(s)
Cell Nucleus/metabolism , Giardia lamblia/metabolism , Protozoan Proteins/metabolism , Active Transport, Cell Nucleus/drug effects , Active Transport, Cell Nucleus/physiology , Animals , Antiparasitic Agents/pharmacology , Cell Nucleus/drug effects , Cell Nucleus/genetics , Computational Biology , Giardia lamblia/drug effects , Giardia lamblia/genetics , Giardia lamblia/growth & development , Hydrolases/metabolism , Ivermectin/pharmacology , Parasite Encystment/drug effects , Parasite Encystment/genetics , Protein Transport/drug effects , Protein Transport/genetics , Protozoan Proteins/genetics , Quinazolines/pharmacology , alpha Karyopherins/genetics , alpha Karyopherins/metabolism , beta Karyopherins/genetics , beta Karyopherins/metabolism
19.
Open Forum Infect Dis ; 5(12): ofy312, 2018 Dec.
Article in English | MEDLINE | ID: mdl-30568982

ABSTRACT

Duration of colonization by extended-spectrum ß-lactamase-producing Enterobacteriaceae (ESBL-E) and factors associated with it were studied in 20 newborns in Seville, Spain. Median duration of colonization was 7.5 months; factors associated with prolonged colonization were delivery by caesarean section, colonization of the mother, and phylogroup B2 Eschericha coli isolate.

20.
Apunts, Med. esport (Internet) ; 53(200): 129-137, oct.-dic. 2018. tab, graf
Article in Spanish | IBECS | ID: ibc-180017

ABSTRACT

La estructura física de la población deportiva cubana ha cambiado de acuerdo a la evolución secular, la adaptación morfológica al deporte, campeonatos internacionales más calificados y cambios dentro del deporte. La propuesta de este estudio es proveer nuevos datos antropométricos de referencias para las disciplinas deportivas que puedan ser utilizados para el control médico del entrenamiento deportivo. La fuente de información primaria fue la base de datos del Proyecto Antropológico "Evolución Morfológica en población deportiva cubana, 1970-2014", disponible en el departamento de Cineantropometría del Instituto de Medicina del Deporte. Para cada deporte de equipo fueron seleccionados cuarenta sujetos, mientras que diez fueron seleccionados para cada deporte individual. Usando todos estos datos, fueron obtenidas tablas de referencia con estimados de la grasa por Withers y colaboradores, el somatotipo de Heath-Carter, la suma de seis panículos y el índice de Masa Corporal Activa. Este conocimiento ofrece un soporte para la práctica del control médico del entrenamiento deportivo, también ofrece asistencia práctica para entrenadores en lo que respecta a la selección de la modalidad deportiva adecuada, y en correspondencia con las características antropométricas ideales de una población deportiva de elite. Por otra parte, nosotros introducimos estimados de grasa corporal a través de las ecuaciones de Withers y colaboradores, las cuales fueron obtenidas de una base de datos de deportistas de alto rendimiento


Physical structures in Cuban sporting population have changed according to secular trend, sport morphological adaptation, more qualified international championship and changes within the game. The purpose of this study was to provide new anthropometrical references data for many sporting disciplines in a form that may be readily utilized to practice the medical management of athletic training. Primary information source was the Anthropological Project database "Morphological Evolution of Cuban Sporting Population, 1970-2014", available through the Sports Medicine Institute's Kinanthropometry Department. Forty subjects were selected for each team sport, while 10 subjects were selected for each individual sport or positions and roles within sports. Using all the data, a set of references tables have been obtained based on Whithers et al. equation to estimate percentage body fat, Heath-Carter somatotyping, the sum of six skinfolds, and Fat Free Mass Index. This knowledge offers support to practice the medical management of athletic training, can also offer practical assistance to coaches in the suitable selection for the correct sporting modalities and physical development of elite athletes, by means of diet and training, in accordance with the model anthropomeric characteristics of an elite sporting population. On the other hand, we estimated Whiters et al. six-site skinfold equations, which were derived from high-performance athletes data set


Subject(s)
Humans , Male , Female , Adolescent , Young Adult , Adult , Athletic Performance/physiology , Anthropometry/methods , Body Composition/physiology , Sports/physiology , Retrospective Studies , Data Analysis , Cuba
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