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1.
Nucleic Acids Res ; 50(14): e79, 2022 08 12.
Article in English | MEDLINE | ID: mdl-35524555

ABSTRACT

Trypanosomatids cause the neglected tropical diseases, sleeping sickness, Chagas disease and the leishmaniases. Studies on these lethal parasites would be further facilitated by new and improved genetic technologies. Scalable precision editing methods, for example, could be used to improve our understanding of potential mutations associated with drug resistance, a current priority given that several new anti-trypanosomal drugs, with known targets, are currently in clinical development. We report the development of a simple oligo targeting method for rapid and precise editing of priority drug targets in otherwise wild type trypanosomatids. In Trypanosoma brucei, approx. 50-b single-stranded oligodeoxynucleotides were optimal, multiple base edits could be incorporated, and editing efficiency was substantially increased when mismatch repair was suppressed. Resistance-associated edits were introduced in T. brucei cyclin dependent kinase 12 (CRK12, L482F) or cleavage and polyadenylation specificity factor 3 (N232H), in the Trypanosoma cruzi proteasome ß5 subunit (G208S), or in Leishmania donovani CRK12 (G572D). We further implemented oligo targeting for site saturation mutagenesis, targeting codon G492 in T. brucei CRK12. This approach, combined with amplicon sequencing for codon variant scoring, revealed fourteen resistance conferring G492 edits encoding six distinct amino acids. The outputs confirm on-target drug activity, reveal a variety of resistance-associated mutations, and facilitate rapid assessment of potential impacts on drug efficacy.


Subject(s)
Parasites , Trypanosoma brucei brucei , Trypanosoma cruzi , Animals , Codon/metabolism , Drug Resistance/genetics , Mutation , Parasites/genetics , Trypanosoma brucei brucei/genetics , Trypanosoma brucei brucei/metabolism , Trypanosoma cruzi/genetics
2.
Mol Biochem Parasitol ; 249: 111476, 2022 05.
Article in English | MEDLINE | ID: mdl-35378143

ABSTRACT

Proteins of interest are frequently expressed with a fusion-tag to facilitate experimental analysis. In trypanosomatids, which are typically diploid, a tag-encoding DNA fragment is typically fused to one native allele. However, since recombinant cells represent ≪0.1% of the population following transfection, these DNA fragments also incorporate a marker cassette for positive selection. Consequently, native mRNA untranslated regions (UTRs) are replaced, potentially perturbing gene expression; in trypanosomatids, UTRs often impact gene expression in the context of widespread and constitutive polycistronic transcription. We sought to develop a tagging strategy that preserves native UTRs in bloodstream-form African trypanosomes, and here we describe a CRISPR/Cas9-based knock-in approach to drive precise and marker-free tagging of essential genes. Using simple tag-encoding amplicons, we tagged four proteins: a histone acetyltransferase, HAT2; a histone deacetylase, HDAC3; a cleavage and polyadenylation specificity factor, CPSF3; and a variant surface glycoprotein exclusion factor, VEX2. The approach maintained the native UTRs and yielded clonal strains expressing functional recombinant proteins, typically with both alleles tagged. We demonstrate utility for both immunofluorescence-based localisation and for enriching protein complexes; GFPHAT2 or GFPHDAC3 complexes in this case. This precision tagging approach facilitates the assembly of strains expressing essential recombinant genes with their native UTRs preserved.


Subject(s)
Trypanosoma brucei brucei , Trypanosoma , CRISPR-Cas Systems , Genes, Essential , Trypanosoma/genetics , Trypanosoma brucei brucei/genetics , Untranslated Regions
3.
Antimicrob Agents Chemother ; 66(1): e0153521, 2022 01 18.
Article in English | MEDLINE | ID: mdl-34606338

ABSTRACT

Phenotypic screening identified an arylsulfonamide compound with activity against Trypanosoma cruzi, the causative agent of Chagas' disease. Comprehensive mode of action studies revealed that this compound primarily targets the T. cruzi proteasome, binding at the interface between ß4 and ß5 subunits that catalyze chymotrypsin-like activity. A mutation in the ß5 subunit of the proteasome was associated with resistance to compound 1, while overexpression of this mutated subunit also reduced susceptibility to compound 1. Further genetically engineered and in vitro-selected clones resistant to proteasome inhibitors known to bind at the ß4/ß5 interface were cross-resistant to compound 1. Ubiquitinated proteins were additionally found to accumulate in compound 1-treated epimastigotes. Finally, thermal proteome profiling identified malic enzyme as a secondary target of compound 1, although malic enzyme inhibition was not found to drive potency. These studies identify a novel pharmacophore capable of inhibiting the T. cruzi proteasome that may be exploitable for anti-chagasic drug discovery.


Subject(s)
Chagas Disease , Trypanosoma cruzi , Chagas Disease/drug therapy , Drug Discovery , Humans , Proteasome Endopeptidase Complex/metabolism , Proteasome Inhibitors/pharmacology , Trypanosoma cruzi/chemistry
4.
PLoS Pathog ; 16(11): e1008932, 2020 11.
Article in English | MEDLINE | ID: mdl-33141865

ABSTRACT

Livestock diseases caused by Trypanosoma congolense, T. vivax and T. brucei, collectively known as nagana, are responsible for billions of dollars in lost food production annually. There is an urgent need for novel therapeutics. Encouragingly, promising antitrypanosomal benzoxaboroles are under veterinary development. Here, we show that the most efficacious subclass of these compounds are prodrugs activated by trypanosome serine carboxypeptidases (CBPs). Drug-resistance to a development candidate, AN11736, emerged readily in T. brucei, due to partial deletion within the locus containing three tandem copies of the CBP genes. T. congolense parasites, which possess a larger array of related CBPs, also developed resistance to AN11736 through deletion within the locus. A genome-scale screen in T. brucei confirmed CBP loss-of-function as the primary mechanism of resistance and CRISPR-Cas9 editing proved that partial deletion within the locus was sufficient to confer resistance. CBP re-expression in either T. brucei or T. congolense AN11736-resistant lines restored drug-susceptibility. CBPs act by cleaving the benzoxaborole AN11736 to a carboxylic acid derivative, revealing a prodrug activation mechanism. Loss of CBP activity results in massive reduction in net uptake of AN11736, indicating that entry is facilitated by the concentration gradient created by prodrug metabolism.


Subject(s)
Boron Compounds/metabolism , Carboxypeptidases/metabolism , Trypanocidal Agents/metabolism , Trypanosoma brucei brucei/enzymology , Trypanosoma congolense/enzymology , Trypanosoma vivax/enzymology , Trypanosomiasis, African/veterinary , Valine/analogs & derivatives , Animals , Carboxylic Acids/metabolism , Drug Resistance , Female , Livestock , Mice , Parasitemia/veterinary , Prodrugs/metabolism , Protozoan Proteins/metabolism , Trypanosoma brucei brucei/drug effects , Trypanosoma congolense/drug effects , Trypanosoma vivax/drug effects , Trypanosomiasis, African/drug therapy , Trypanosomiasis, African/parasitology , Valine/metabolism
5.
Proc Natl Acad Sci U S A ; 115(38): 9616-9621, 2018 09 18.
Article in English | MEDLINE | ID: mdl-30185555

ABSTRACT

African trypanosomes cause lethal and neglected tropical diseases, known as sleeping sickness in humans and nagana in animals. Current therapies are limited, but fortunately, promising therapies are in advanced clinical and veterinary development, including acoziborole (AN5568 or SCYX-7158) and AN11736, respectively. These benzoxaboroles will likely be key to the World Health Organization's target of disease control by 2030. Their mode of action was previously unknown. We have developed a high-coverage overexpression library and use it here to explore drug mode of action in Trypanosoma brucei Initially, an inhibitor with a known target was used to select for drug resistance and to test massive parallel library screening and genome-wide mapping; this effectively identified the known target and validated the approach. Subsequently, the overexpression screening approach was used to identify the target of the benzoxaboroles, Cleavage and Polyadenylation Specificity Factor 3 (CPSF3, Tb927.4.1340). We validated the CPSF3 endonuclease as the target, using independent overexpression strains. Knockdown provided genetic validation of CPSF3 as essential, and GFP tagging confirmed the expected nuclear localization. Molecular docking and CRISPR-Cas9-based editing demonstrated how acoziborole can specifically block the active site and mRNA processing by parasite, but not host CPSF3. Thus, our findings provide both genetic and chemical validation for CPSF3 as an important drug target in trypanosomes and reveal inhibition of mRNA maturation as the mode of action of the trypanocidal benzoxaboroles. Understanding the mechanism of action of benzoxaborole-based therapies can assist development of improved therapies, as well as the prediction and monitoring of resistance, if or when it arises.


Subject(s)
Cleavage And Polyadenylation Specificity Factor/antagonists & inhibitors , Protozoan Proteins/antagonists & inhibitors , Trypanocidal Agents/pharmacology , Trypanosoma brucei brucei/physiology , Trypanosomiasis, African/prevention & control , Animals , Benzamides/pharmacology , Benzamides/therapeutic use , Boron Compounds/pharmacology , Boron Compounds/therapeutic use , CRISPR-Cas Systems , Cell Nucleus/genetics , Cell Nucleus/metabolism , Cleavage And Polyadenylation Specificity Factor/genetics , Cleavage And Polyadenylation Specificity Factor/metabolism , Drug Resistance/drug effects , Drug Resistance/genetics , Gene Knockdown Techniques , Gene Library , High-Throughput Screening Assays/methods , Humans , Molecular Docking Simulation , Protozoan Proteins/genetics , Protozoan Proteins/metabolism , RNA Processing, Post-Transcriptional/drug effects , RNA, Messenger/metabolism , RNA, Protozoan/metabolism , Trypanocidal Agents/therapeutic use , Trypanosoma brucei brucei/drug effects , Trypanosomiasis, African/transmission , Trypanosomiasis, African/veterinary , Valine/analogs & derivatives , Valine/pharmacology , Valine/therapeutic use
6.
Sci Rep ; 8(1): 7960, 2018 May 21.
Article in English | MEDLINE | ID: mdl-29785042

ABSTRACT

The Cas9 endonuclease can be programmed by guide RNA to introduce sequence-specific breaks in genomic DNA. Thus, Cas9-based approaches present a range of novel options for genome manipulation and precision editing. African trypanosomes are parasites that cause lethal human and animal diseases. They also serve as models for studies on eukaryotic biology, including 'divergent' biology. Genome modification, exploiting the native homologous recombination machinery, has been important for studies on trypanosomes but often requires multiple rounds of transfection using selectable markers that integrate at low efficiency. We report a system for delivering tetracycline inducible Cas9 and guide RNA to Trypanosoma brucei. In these cells, targeted DNA cleavage and gene disruption can be achieved at close to 100% efficiency without further selection. Disruption of aquaglyceroporin (AQP2) or amino acid transporter genes confers resistance to the clinical drugs pentamidine or eflornithine, respectively, providing simple and robust assays for editing efficiency. We also use the new system for homology-directed, precision base editing; a single-stranded oligodeoxyribonucleotide repair template was delivered to introduce a single AQP2 - T791G/L264R mutation in this case. The technology we describe now enables a range of novel programmed genome-editing approaches in T. brucei that would benefit from temporal control, high-efficiency and precision.


Subject(s)
Aquaglyceroporins , CRISPR-Associated Protein 9 , CRISPR-Cas Systems , Gene Editing , RNA, Guide, Kinetoplastida , Trypanosomiasis, African , Aquaglyceroporins/antagonists & inhibitors , Aquaglyceroporins/genetics , Base Sequence , CRISPR-Associated Protein 9/genetics , RNA, Guide, Kinetoplastida/genetics , Trypanosoma brucei brucei/genetics , Trypanosomiasis, African/genetics , Trypanosomiasis, African/therapy
7.
Nucleic Acids Res ; 45(15): 9030-9045, 2017 Sep 06.
Article in English | MEDLINE | ID: mdl-28911117

ABSTRACT

Mitochondrial endonuclease G from Leishmania infantum (LiEndoG) participates in the degradation of double-stranded DNA (dsDNA) during parasite cell death and is catalytically inactive at a pH of 8.0 or above. The presence, in the primary sequence, of an acidic amino acid-rich insertion exclusive to trypanosomatids and its spatial position in a homology-built model of LiEndoG led us to postulate that this peptide stretch might act as a pH sensor for self-inhibition. We found that a LiEndoG variant lacking residues 145-180 is indeed far more active than its wild-type counterpart at pH values >7.0. In addition, we discovered that (i) LiEndoG exists as a homodimer, (ii) replacement of Ser211 in the active-site SRGH motif with the canonical aspartate from the DRGH motif of other nucleases leads to a catalytically deficient enzyme, (iii) the activity of the S211D variant can be restored upon the concomitant replacement of Ala247 with Arg and (iv) a C-terminal extension is responsible for the observed preferential cleavage of single-stranded DNA (ssDNA) and ssDNA-dsDNA junctions. Taken together, our results support the view that LiEndoG is a multidomain molecular machine whose nuclease activity can be subtly modulated or even abrogated through architectural changes brought about by environmental conditions and interaction with other binding partners.


Subject(s)
Amino Acid Sequence , DNA, Protozoan/chemistry , DNA, Single-Stranded/chemistry , Endodeoxyribonucleases/chemistry , Leishmania infantum/enzymology , Protozoan Proteins/chemistry , Sequence Deletion , Amino Acid Substitution , Catalytic Domain , Cloning, Molecular , DNA Cleavage , DNA, Protozoan/genetics , DNA, Protozoan/metabolism , DNA, Single-Stranded/genetics , DNA, Single-Stranded/metabolism , Endodeoxyribonucleases/genetics , Endodeoxyribonucleases/metabolism , Escherichia coli/genetics , Escherichia coli/metabolism , Gene Expression , Hydrogen-Ion Concentration , Kinetics , Leishmania infantum/chemistry , Models, Molecular , Nucleic Acid Conformation , Protein Binding , Protein Conformation, alpha-Helical , Protein Conformation, beta-Strand , Protein Interaction Domains and Motifs , Protein Multimerization , Protozoan Proteins/genetics , Protozoan Proteins/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Sequence Alignment , Sequence Homology, Amino Acid , Structure-Activity Relationship , Substrate Specificity
8.
An. psicol ; 33(2): 243-251, mayo 2017. tab
Article in English | IBECS | ID: ibc-161578

ABSTRACT

The aim of the present study was to analyze the role of the psychopathologic symptomatology of participants on the perpetration of child-to-parent violence (CPV), as well as to test the moderator role of the participant sex on the psychopathology. The sample comprised 855 students from middle school, high school and vocational education (399 boys and 456 girls). Age range varies among 13- 21 years old (M = 16.09; DT = 1.34), being 307 (35.9%) among 13-15, 501 (58.6%) 16-18 and 47 (5.5%) 19-21. Most of them (91%) had Spanish citizenship. Psychopathology was assessed with the Symptom Checklist 90 Revised, whereas CPV perpetration was assessed employing the Child-toParent Aggression Questionnaire. Hierarchical multiple regression analyses showed that the most important psychopathologic symptoms were hostility, paranoid ideation and depression, being related higher scores on hostility and paranoid ideation, and lower on depression, with the perpetration of CPV. Interaction analyses showed a moderator role of the participant sex with the interpersonal sensitivity and obsessive-compulsive in the case of CPV to the father, and interpersonal sensitivity, obsessive-compulsive and paranoid ideation in the case of CPV to the mother. Results confirm the idea that the existence of psychopathologic symptomatology by the minors has an effect on the probability of perpetration CPV, being this effect different depending on the sex of the perpetrator


El objetivo del presente estudio fue analizar el papel de la sintomatología psicopatológica de los participantes sobre la comisión de violencia filio-parental, así como comprobar el rol moderador del sexo del participante sobre dicha sintomatología. La muestra estuvo compuesta por 855 estudiantes de 3º y 4º de Educación Secundaria Obligatoria, 1º y 2º de Bachillerato y Formación Profesional (399 chicos y 456 chicas). Sus edades estaban comprendidas entre los 13 y 21 años (M = 16.09; DT = 1.34), teniendo 307 (35.9%) de ellos entre 13 y 15 años, 501 (58.6%) entre 16 y 18, y 47 (5.5%) entre 19 y 21. La gran mayoría (91%) tenían nacionalidad española. La existencia de psicopatología se evaluó mediante la escala Symptom-Checklist-90-Revised, mientras que la comisión de la VFP se evaluó mediante el Child-to-Parent Aggression Questionnaire. Los análisis de regresión lineal múltiple jerárquica indicaron que los principales síntomas psicopatológicos en la comisión de VFP son la hostilidad, ideación paranoide y depresión, estando relacionadas puntuaciones superiores en hostilidad e ideación paranoide, e inferiores en depresión con la comisión de VFP. El análisis de interacciones mostró un papel moderador del sexo del participante con la sensitividad interpersonal y las obsesiones, en el caso de la VFP hacia el padre, y sensitividad interpersonal, obsesiones e ideación paranoide en el caso de la VFP hacia la madre. Los resultados confirman la idea de que la existencia de una sintomatología psicopatológica por parte de los menores tiene un efecto sobre la probabilidad de comisión de la VFP, siendo este efecto diferente en función del sexo de la persona agresora


Subject(s)
Humans , Domestic Violence/psychology , Mental Disorders/psychology , Age and Sex Distribution , Parent-Child Relations , Risk Factors , Substance-Related Disorders/epidemiology
9.
PLoS Pathog ; 13(3): e1006279, 2017 03.
Article in English | MEDLINE | ID: mdl-28334017

ABSTRACT

Trypanosoma brucei, causing African sleeping-sickness, exploits quorum-sensing (QS) to generate the 'stumpy forms' necessary for the parasite's transmission to tsetse-flies. These quiescent cells are generated by differentiation in the bloodstream from proliferative slender forms. Using genome-wide RNAi selection we screened for repressors of transmission stage-enriched mRNAs in slender forms, using the stumpy-elevated ESAG9 transcript as a model. This identified REG9.1, whose RNAi-silencing alleviated ESAG9 repression in slender forms and tsetse-midgut procyclic forms. Interestingly, trypanosome surface protein Family 5 and Family 7 mRNAs were also elevated, which, like ESAG9, are T. brucei specific and stumpy-enriched. We suggest these contribute to the distinct transmission biology and vector tropism of T. brucei from other African trypanosome species. As well as surface family regulation, REG9.1-depletion generated QS-independent development to stumpy forms in vivo, whereas REG9.1 overexpression in bloodstream forms potentiated spontaneous differentiation to procyclic forms in the absence of an external signal. Combined, this identifies REG9.1 as a regulator of developmental cell fate, controlling the expression of Trypanosoma brucei-specific molecules elevated during transmission.


Subject(s)
Gene Expression Regulation/genetics , Protozoan Proteins/biosynthesis , RNA-Binding Proteins/biosynthesis , Trypanosomiasis, African/genetics , Trypanosomiasis, African/transmission , Animals , Cell Differentiation/genetics , Disease Models, Animal , Female , Flow Cytometry , Genome-Wide Association Study , Immunoblotting , Mice , Protozoan Proteins/genetics , RNA Interference , RNA-Binding Proteins/genetics , Transfection , Trypanosoma brucei brucei , Trypanosoma congolense , Trypanosoma vivax
10.
Span J Psychol ; 20: E15, 2017 Feb 21.
Article in English | MEDLINE | ID: mdl-28219469

ABSTRACT

The aim of the present study was to analyze the role of minors' impulsiveness in the perpetration of child-to-parent violence (CPV), controlling for sex, age, interest allocated to studies, and participant´s and parent´s drug consumption habits, as well as to test the moderating role of the aggressor's sex on impulsiveness. The sample comprised 934 students from high school centers (438 boys and 496 girls), aged between 13 and 21 years. Impulsiveness was assessed through the Barratt's Impulsiveness Scale (BIS-11), whereas CPV perpetration was assessed employing the Child-to-Parent Aggression Questionnaire. Hierarchical multiple regression analyses showed that both attentional (ß = .09, p < .05; ß = .12, p < .001) and motor impulsiveness (ß = .26, p < .001; ß = .25, p < .001) were related to the perpetration of CPV. Interaction analyses showed a moderating role of the aggressor's sex over motor impulsiveness in the case of CPV towards the father (ß = .29, p < .05), and over attentional impulsiveness in the case of CPV towards the mother (ß = .45, p < .001). Results confirm the idea that minors' impulsiveness has an effect on the probability of CPV perpetration, which differs according to the sex of the perpetrator.


Subject(s)
Adolescent Behavior/ethnology , Impulsive Behavior/physiology , Parent-Child Relations/ethnology , Violence/ethnology , Adolescent , Adult , Female , Humans , Male , Spain/ethnology , Young Adult
11.
Span. j. psychol ; 20: e15.1-e15.11, 2017. tab, graf
Article in English | IBECS | ID: ibc-160558

ABSTRACT

The aim of the present study was to analyze the role of minors’ impulsiveness in the perpetration of child-toparent violence (CPV), controlling for sex, age, interest allocated to studies, and participant´s and parent´s drug consumption habits, as well as to test the moderating role of the aggressor’s sex on impulsiveness. The sample comprised 934 students from high school centers (438 boys and 496 girls), aged between 13 and 21 years. Impulsiveness was assessed through the Barratt’s Impulsiveness Scale (BIS-11), whereas CPV perpetration was assessed employing the Child-to-Parent Aggression Questionnaire. Hierarchical multiple regression analyses showed that both attentional (β = .09, p < .05; β = .12, p < .001) and motor impulsiveness (β = .26, p < .001; β = .25, p < .001) were related to the perpetration of CPV. Interaction analyses showed a moderating role of the aggressor’s sex over motor impulsiveness in the case of CPV towards the father (β = .29, p < .05), and over attentional impulsiveness in the case of CPV towards the mother (β = .45, p < .001). Results confirm the idea that minors’ impulsiveness has an effect on the probability of CPV perpetration, which differs according to the sex of the perpetrator (AU)


No disponible


Subject(s)
Humans , Male , Female , Adolescent , Young Adult , Adult , Parent-Child Relations , Violence/psychology , Domestic Violence/psychology , Disruptive, Impulse Control, and Conduct Disorders/psychology , Surveys and Questionnaires , Students/psychology , Disruptive, Impulse Control, and Conduct Disorders/classification , Disruptive, Impulse Control, and Conduct Disorders/physiopathology
12.
PLoS One ; 10(6): e0130365, 2015.
Article in English | MEDLINE | ID: mdl-26090847

ABSTRACT

We have previously identified homologs for nearly half of the approximately 30 known yeast Atg's in the genome database of the human sleeping sickness parasite Trypanosoma brucei. So far, only a few of these homologs have their role in autophagy experimentally confirmed. Among the candidates was the ortholog of Atg24 that is involved in pexophagy in yeast. In T. brucei, the peroxisome-like organelles named glycosomes harbor core metabolic processes, especially glycolysis. In the autotrophic yeast, autophagy is essential for adaptation to different nutritional environments by participating in the renewal of the peroxisome population. We hypothesized that autophagic turnover of the parasite's glycosomes plays a role in differentiation during its life cycle, which demands adaptation to different host environments and associated dramatic changes in nutritional conditions. We therefore characterized T. brucei ATG24, the T. brucei ortholog of yeast Atg24 and mammalian SNX4, and found it to have a regulatory role in autophagy and differentiation as well as endocytic trafficking. ATG24 partially localized on endocytic membranes where it was recruited via PI3-kinase III/VPS34. ATG24 silencing severely impaired receptor-mediated endocytosis of transferrin, but not adsorptive uptake of a lectin, and caused a major enlargement of the flagellar pocket. ATG24 silencing approximately doubled the number of autophagosomes, suggesting a role in repressing autophagy, and strongly accelerated differentiation, in accordance with a role of autophagy in parasite differentiation. Overexpression of the two isoforms of T. brucei ATG8 fused to GFP slowed down differentiation, possibly by a dominant-negative effect. This was overcome by ATG24 depletion, further supporting its regulatory role.


Subject(s)
Autophagy , Flagella/metabolism , Protozoan Proteins/physiology , Trypanosoma brucei brucei/metabolism , Amino Acid Sequence , Class III Phosphatidylinositol 3-Kinases/metabolism , Conserved Sequence , Endocytosis , Endosomes/metabolism , Homeostasis , Molecular Sequence Data , Protein Transport , Sequence Homology, Amino Acid , Trypanosoma brucei brucei/ultrastructure
13.
Nucleic Acids Res ; 43(9): 4491-504, 2015 May 19.
Article in English | MEDLINE | ID: mdl-25873624

ABSTRACT

Trypanosomes mostly regulate gene expression through post-transcriptional mechanisms, particularly mRNA stability. However, much mRNA degradation is cytoplasmic such that mRNA nuclear export must represent an important level of regulation. Ribosomal RNAs must also be exported from the nucleus and the trypanosome orthologue of NMD3 has been confirmed to be involved in rRNA processing and export, matching its function in other organisms. Surprisingly, we found that TbNMD3 depletion also generates mRNA accumulation of procyclin-associated genes (PAGs), these being co-transcribed by RNA polymerase I with the procyclin surface antigen genes expressed on trypanosome insect forms. By whole transcriptome RNA-seq analysis of TbNMD3-depleted cells we confirm the regulation of the PAG transcripts by TbNMD3 and using reporter constructs reveal that PAG1 regulation is mediated by its 5'UTR. Dissection of the mechanism of regulation demonstrates that it is not dependent upon translational inhibition mediated by TbNMD3 depletion nor enhanced transcription. However, depletion of the nuclear export factors XPO1 or MEX67 recapitulates the effects of TbNMD3 depletion on PAG mRNAs and mRNAs accumulated in the nucleus of TbNMD3-depleted cells. These results invoke a novel RNA regulatory mechanism involving the NMD3-dependent nuclear export of mRNA cargos, suggesting a shared platform for mRNA and rRNA export.


Subject(s)
Cell Nucleus/metabolism , Karyopherins/metabolism , Nucleocytoplasmic Transport Proteins/metabolism , Protozoan Proteins/physiology , RNA, Messenger/metabolism , RNA, Ribosomal/metabolism , RNA-Binding Proteins/physiology , Receptors, Cytoplasmic and Nuclear/metabolism , 5' Untranslated Regions , Active Transport, Cell Nucleus , Karyopherins/antagonists & inhibitors , Nucleocytoplasmic Transport Proteins/antagonists & inhibitors , Protozoan Proteins/antagonists & inhibitors , RNA-Binding Proteins/antagonists & inhibitors , Receptors, Cytoplasmic and Nuclear/antagonists & inhibitors , Transcriptional Activation , Trypanosoma brucei brucei/genetics , Trypanosoma brucei brucei/metabolism , Exportin 1 Protein
14.
PLoS One ; 9(2): e89526, 2014.
Article in English | MEDLINE | ID: mdl-24651293

ABSTRACT

EndoG, a member of the DNA/RNA non-specific ßßα-metal family of nucleases, has been demonstrated to be present in many organisms, including Trypanosomatids. This nuclease participates in the apoptotic program in these parasites by migrating from the mitochondrion to the nucleus, where it takes part in the degradation of genomic DNA that characterizes this process. We now demonstrate that Leishmania infantum EndoG (LiEndoG) is an endo-exonuclease that has a preferential 5' exonuclease activity on linear DNA. Regardless of its role during apoptotic cell death, this enzyme seems to be necessary during normal development of the parasites as indicated by the reduced growth rates observed in LiEndoG hemi-knockouts and their poor infectivity in differentiated THP-1 cells. The pro-life role of this protein is also corroborated by the higher survival rates of parasites that over-express this protein after treatment with the LiEndoG inhibitor Lei49. Taken together, our results demonstrate that this enzyme plays essential roles in both survival and death of Leishmania parasites.


Subject(s)
Apoptosis/genetics , Endodeoxyribonucleases/metabolism , Endonucleases/metabolism , Exonucleases/metabolism , Leishmania infantum/metabolism , Mitochondria/metabolism , Endodeoxyribonucleases/genetics , Endonucleases/genetics , Exonucleases/genetics , Leishmania infantum/genetics , Mitochondria/genetics
15.
Article in English | MEDLINE | ID: mdl-24294594

ABSTRACT

African trypanosomes are sustained in the bloodstream of their mammalian hosts by their extreme capacity for antigenic variation. However, for life cycle progression, trypanosomes also must generate transmission stages called stumpy forms that are pre-adapted to survive when taken up during the bloodmeal of the disease vector, tsetse flies. These stumpy forms are rather different to the proliferative slender forms that maintain the bloodstream parasitaemia. Firstly, they are non proliferative and morphologically distinct, secondly, they show particular sensitivity to environmental cues that signal entry to the tsetse fly and, thirdly, they are relatively robust such that they survive the changes in temperature, pH and proteolytic environment encountered within the tsetse midgut. These characteristics require regulated changes in gene expression to pre-adapt the parasite and the use of environmental sensing mechanisms, both of which allow the rapid initiation of differentiation to tsetse midgut procyclic forms upon transmission. Interestingly, the generation of stumpy forms is also regulated and periodic in the mammalian blood, this being governed by a density-sensing mechanism whereby a parasite-derived signal drives cell cycle arrest and cellular development both to optimize transmission and to prevent uncontrolled parasite multiplication overwhelming the host. In this review we detail recent developments in our understanding of the molecular mechanisms that underpin the production of stumpy forms in the mammalian bloodstream and their signal perception pathways both in the mammalian bloodstream and upon entry into the tsetse fly. These discoveries are discussed in the context of conserved eukaryotic signaling and differentiation mechanisms. Further, their potential to act as targets for therapeutic strategies that disrupt parasite development either in the mammalian bloodstream or upon their transmission to tsetse flies is also discussed.


Subject(s)
Adaptation, Physiological , Blood/parasitology , Gene Expression Regulation , Trypanosoma/physiology , Tsetse Flies/parasitology , Animals , Humans , Mammals , Trypanosoma/genetics , Trypanosoma/growth & development
16.
ChemMedChem ; 8(7): 1161-74, 2013 Jul.
Article in English | MEDLINE | ID: mdl-23625887

ABSTRACT

Two series of 5'-triphenylmethyl (trityl)-substituted thymidine derivatives were synthesized and tested against Leishmania infantum axenic promastigotes and amastigotes. Several of these compounds show significant antileishmanial activity, with IC50 values in the low micromolar range. Among these, 3'-O-(isoleucylisoleucyl)-5'-O-(3,3,3-triphenylpropanoyl)thymidine displays particularly good activity against intracellular amastigotes. Assays performed to characterize the nature of parasite cell death in the presence of the tritylthymidines indicated significant alterations in mitochondrial transmembrane potential, an increase in superoxide concentrations, and also significant decreases in DNA degradation during the cell death process. Results point to the mitochondrial nuclease LiEndoG as a target for the action of this family of compounds.


Subject(s)
Antiparasitic Agents/pharmacology , Endodeoxyribonucleases/antagonists & inhibitors , Enzyme Inhibitors/pharmacology , Leishmania infantum/drug effects , Leishmania infantum/enzymology , Thymidine/pharmacology , Antiparasitic Agents/chemical synthesis , Antiparasitic Agents/chemistry , Cell Death/drug effects , Dose-Response Relationship, Drug , Endodeoxyribonucleases/metabolism , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/chemistry , Humans , Jurkat Cells , Mitochondria/enzymology , Molecular Structure , Structure-Activity Relationship , Thymidine/chemical synthesis , Thymidine/chemistry
17.
Cells ; 1(3): 346-71, 2012 Jul 27.
Article in English | MEDLINE | ID: mdl-24710480

ABSTRACT

Autophagy is a ubiquitous eukaryotic process that also occurs in trypanosomatid parasites, protist organisms belonging to the supergroup Excavata, distinct from the supergroup Opistokontha that includes mammals and fungi. Half of the known yeast and mammalian AuTophaGy (ATG) proteins were detected in trypanosomatids, although with low sequence conservation. Trypanosomatids such as Trypanosoma brucei, Trypanosoma cruzi and Leishmania spp. are responsible for serious tropical diseases in humans. The parasites are transmitted by insects and, consequently, have a complicated life cycle during which they undergo dramatic morphological and metabolic transformations to adapt to the different environments. Autophagy plays a major role during these transformations. Since inhibition of autophagy affects the transformation, survival and/or virulence of the parasites, the ATGs offer promise for development of drugs against tropical diseases. Furthermore, various trypanocidal drugs have been shown to trigger autophagy-like processes in the parasites. It is inferred that autophagy is used by the parasites in an-not always successful-attempt to cope with the stress caused by the toxic compounds.

18.
Chembiochem ; 12(17): 2615-22, 2011 Nov 25.
Article in English | MEDLINE | ID: mdl-22114054

ABSTRACT

Using information from wild-type and mutant Vibrio vulnificus nuclease (Vvn) and I-PpoI homing endonuclease co-crystallized with different oligodeoxynucleotides, we have built the complex of Vvn with a DNA octamer and carried out a series of simulations to dissect the catalytic mechanism of this metallonuclease in a stepwise fashion. The distinct roles played in the reaction by individual active site residues, the metal cation and water molecules have been clarified by using a combination of classical molecular dynamics simulations and quantum mechanical calculations. Our results strongly support the most parsimonious catalytic mechanism, namely one in which a single water molecule from bulk solvent is used to cleave the phosphodiester bond and protonate the 3'-hydroxylate leaving group.


Subject(s)
Endonucleases/metabolism , Molecular Dynamics Simulation , Vibrio vulnificus/enzymology , Biocatalysis , Catalytic Domain , Crystallography, X-Ray , Endodeoxyribonucleases/chemistry , Endodeoxyribonucleases/metabolism , Endonucleases/chemistry , Ions/chemistry , Metals/chemistry , Oligodeoxyribonucleotides/chemistry , Periplasm/enzymology , Quantum Theory
19.
Mol Biochem Parasitol ; 163(1): 28-38, 2009 Jan.
Article in English | MEDLINE | ID: mdl-18940204

ABSTRACT

It is increasingly accepted that single-celled organisms, such as Leishmania parasites, are able to undergo a cell death process that resembles apoptosis in metazoans and is induced by a variety of stimuli. However, the molecular mechanisms that participate and regulate this death process are still very poorly described, and very few of the participating molecules have been identified. Because DNA degradation is probably the most frequently characterized event during programmed cell death in Leishmania parasites, we have focused on identifying a candidate nuclease responsible for this effect during the cell death process. The results presented herein demonstrate that Leishmania infantum promastigotes express a nuclease similar to the endonuclease G of higher eukaryotes which, according to its predicted structure, belongs to the beta beta alpha metal superfamily of nucleases. Its cation dependence resembles that of the EndoGs present in other organisms and, similarly to them, it is inhibited by moderate concentrations of K+ or Na+. L. infantum EndoG contains a signal peptide that causes its translocation to the mitochondrion where it is maintained under normal growth conditions. However, under the pressure of a death stimulus such as edelfosine treatment, L. infantum EndoG is released from the single mitochondrion and translocates to the nucleus, where it is thought to participate in the process of DNA degradation that is associated with programmed cell death. Our results also demonstrate that overexpression of the nuclease in edelfosine-treated promastigotes causes a significant increase in the percentage of TUNEL-positive parasites.


Subject(s)
Apoptosis , Cell Nucleus/enzymology , Endodeoxyribonucleases/metabolism , Gene Expression , Leishmania infantum/enzymology , Mitochondria/enzymology , Protozoan Proteins/metabolism , Amino Acid Sequence , Animals , Cell Nucleus/chemistry , Cell Nucleus/genetics , Deoxyribonucleases/chemistry , Deoxyribonucleases/genetics , Deoxyribonucleases/metabolism , Endodeoxyribonucleases/chemistry , Endodeoxyribonucleases/genetics , Humans , Leishmania infantum/chemistry , Leishmania infantum/cytology , Leishmania infantum/genetics , Mitochondria/chemistry , Mitochondria/genetics , Models, Molecular , Molecular Sequence Data , Protein Sorting Signals , Protein Structure, Tertiary , Protein Transport , Protozoan Proteins/chemistry , Protozoan Proteins/genetics , Sequence Alignment
20.
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