The Brassica napus blackleg resistance gene LepR3 encodes a receptor-like protein triggered by the Leptosphaeria maculans effector AVRLM1.

LepR3, found in the Brassica napus cv 'Surpass 400', provides race-specific resistance to the fungal pathogen Leptosphaeria maculans, which was overcome after great devastation in Australia in 2004. We investigated the LepR3 locus to identify the genetic basis of this resistance interaction. We employed a map-based cloning strategy, exploiting collinearity with the Arabidopsis thaliana and Brassica rapa genomes to enrich the map and locate a candidate gene. We also investigated the interaction of LepR3 with the L. maculans avirulence gene AvrLm1 using transgenics. LepR3 was found to encode a receptor-like protein (RLP). We also demonstrated that avirulence towards LepR3 is conferred by AvrLm1, which is responsible for both the Rlm1 and LepR3-dependent resistance responses in B. napus. LepR3 is the first functional B. napus disease resistance gene to be cloned. AvrLm1's interaction with two independent resistance loci, Rlm1 and LepR3, highlights the need to consider redundant phenotypes in 'gene-for-gene' interactions and offers an explanation as to why LepR3 was overcome so rapidly in parts of Australia.

Mapping genes for resistance to Leptosphaeria maculans in Brassica juncea.

Blackleg disease of crucifers, caused by the fungus Leptosphaeria maculans, is a major concern to oilseed rape producers worldwide. Brassica species containing the B genome have high levels of resistance to blackleg. Brassica juncea F2 and first-backcross (B1) populations segregating for resistance to a PG2 isolate of L. maculans were created. Segregation for resistance to L. maculans in these populations suggested that resistance was controlled by two independent genes, one dominant and one recessive in nature. A map of the B. juncea genome was constructed using segregation in the F2 population of a combination of restriction fragment length polymorphism (RFLP) and microsatel lite markers. The B. juncea map consisted of 325 loci and was aligned with previous maps of the Brassica A and B genomes. The gene controlling dominant resistance to L. maculans was positioned on linkage group J13 based on segregation for resistance in the F2 population. This position was confirmed in the B1 population in which the resistance gene was definitively mapped in the interval flanked by pN199RV and sB31143F. The provisional location of the recessive gene controlling resistance to L. maculans on linkage group J18 was identified using a subset of informative F2 individuals.

Identification of two novel genes for blackleg resistance in Brassica napus.

Blackleg, caused by Leptosphaeria maculans, is a major disease of Brassica napus. Two populations of B. napus DH lines, DHP95 and DHP96, with resistance introgressed from B. rapa subsp. sylvestris, were genetically mapped for resistance to blackleg disease with restriction fragment length polymorphism markers. Examination of the DHP95 population indicated that a locus on linkage group N2, named LepR1, was associated with blackleg resistance. In the DHP96 population, a second locus on linkage group N10, designated LepR2, was associated with resistance. We developed BC1 and F2 populations, to study the inheritance of resistance controlled by the genes. Genetic analysis indicated that LepR1 was a dominant nuclear allele, while LepR2 was an incompletely dominant nuclear resistance allele. LepR1 and LepR2 cotyledon resistance was further evaluated by testing 30 isolates from Canada, Australia, Europe, and Mexico. The isolates were from B. napus, B. juncea, and B. oleracea and represented different pathogenicity groups of L. maculans. Results indicated that LepR1 generally conferred a higher level of cotyledon resistance than LepR2. Both genes exhibited race-specific interactions with pathogen isolates; virulence on LepR1 was observed with one isolate, pl87-41, and two isolates, Lifolle 5, and Lifolle 6, were virulent on LepR2. LepR1 prevented hyphal penetration, while LepR2 reduced hyphal growth and inhibited sporulation. Callose deposition was associated with resistance for both loci.

Genetic Diversity of Ascochyta rabiei in Canada.

Assessment of variability of Ascochyta rabiei (teleomorph: Didymella rabiei) was based on virulence tests of 40 isolates and on random amplified polymorphic DNA (RAPD) analysis of 39 isolates from Canada. In addition, isolates of A. rabiei from other countries were assessed in the virulence (18 isolates) and RAPD (20 isolates) analyses. Seven isolates of A. lentis (teleo-morph: Didymella lentis) and two of A. pinodes (teleomorph: Mycosphaerella pinodes) also were included in the RAPD analysis. Significant line-isolate interactions in the virulence tests indicated that certain isolates were virulent only on certain lines. Canadian isolates were grouped into 14 pathotypes using eight chickpea differentials. These groupings also encompassed 17 of the 18 isolates from other countries. RAPD analysis of all 68 isolates using 8 primers produced 112 fragments, of which 96% were polymorphic. Similarities among A. rabiei isolates from Canada ranged from 20 to 100%. In the RAPD dendrogram, all five A. rabiei isolates from Australia, three of six from Syria, three of five from the United States, and one of two from India clustered within the major groups of Canadian isolates. There was a weak association between RAPD and pathotype groups. A. rabiei was 45% similar to A. lentis and only 14% similar to A. pinodes. The levels of DNA variability and virulence among isolates show that the population of A. rabiei in Canada is highly diverse.

Linkage mapping of genes controlling resistance to white rust (Albugo candida) in Brassica rapa (syn. campestris) and comparative mapping to Brassica napus and Arabidopsis thaliana.

Genes for resistance to white rust (Albugo candida) in oilseed Brassica rapa were mapped using a recombinant inbred (RI) population and a genetic linkage map consisting of 144 restriction fragment length polymorphism (RFLP) markers and 3 phenotypic markers. Young seedlings were evaluated by inoculating cotyledons with A. candida race 2 (AC2) and race 7 (AC7) and scoring the interaction phenotype (IP) on a 0-9 scale. The IP of each line was nearly identical for the two races and the population showed bimodal distributions, suggesting that a single major gene (or tightly linked genes) controlled resistance to the two races. The IP scores were converted to categorical resistant and susceptible scores, and these data were used to map a single Mendelian gene controlling resistance to both races on linkage group 4 where resistance to race 2 had been mapped previously. A quantitative trait loci (QTL) mapping approach using the IP scores detected the same major resistance locus for both races, plus a second minor QTL effect for AC2 on linkage group 2. These results indicate that either a dominant allele at a single locus (Acal) or two tightly linked loci control seedling resistance to both races of white rust in the biennial turnip rape cultivar Per. The map positions of white rust resistance genes in B. rapa and Brassica napus were compared and the results indicate where additional loci that have not been mapped may be located. Alignment of these maps to the physical map of the Arabidopsis genome identified regions to target for comparative fine mapping using this model organism.

First Report of Resistance to Benomyl Fungicide in Sclerotinia sclerotiorum.

Benomyl fungicide (Benlate) is used worldwide to control ascomycete pathogens, but resistance has developed in several pathogen populations (1). On the Canadian prairies, benomyl is used to reduce injury caused by Sclerotinia sclerotiorum (Lib.) de Bary on canola (Brassica napus, B. rapa) and alfalfa (Medicago sativa) seed crops. To determine if populations are resistant to benomyl, isolates of S. sclerotiorum collected from 15 fields (12 alfalfa and 3 canola, one isolate per field) in 2000 were grown on potato dextrose agar amended with benomyl at 0, 0.05, 0.5, 5, 50, and 500 mg/liter. Plugs of mycelium from the margin of an actively growing colony were placed in the center of a 10-cm-diameter petri dish containing 15 ml of test medium and incubated on a laboratory bench. Linear growth (mean of maximum width and right angle) of each colony (three replicates each) was measured after 5 to 6 days. The growth of isolates from 13 fields was inhibited by low concentrations of benomyl (EC50 < 8 mg/liter), but two isolates were very resistant (EC50 > 200 mg/liter). Resistant cultures were isolated from infected canola plants in the only two fields in the study in which reduced efficacy of benomyl was suspected. The distribution and importance of benomyl-resistant populations of S. sclerotiorum in the region remains to be determined. Reference: (1) T. R. Pettitt et al. Mycol. Res. 97:1172, 1993.

Inheritance of Resistance to Leptosphaeria maculans in Brassica juncea.

ABSTRACT The inheritance of resistance to Leptosphaeria maculans, the causal agent of black leg of crucifers, was studied in Brassica juncea. Three resistant accessions (UM3021, UM3043, and UM3323) and one susceptible accession (UM3132) of B. juncea were crossed in a complete diallel. Parents, F(1), and F(2) progenies were evaluated for all crosses using both cotyledon and stem inoculation. Cotyledon reaction was evaluated with two isolates of L. maculans, but stem reaction was evaluated with one isolate. Disease reactions observed for individual plants were the same for both inoculation methods and for both isolates of the pathogen for cotyledon reaction. No segregation was observed for the crosses between resistant accessions (UM3043 x UM3323 and UM3021 x UM3323), but a few susceptible plants were observed in the F(2) progeny of crosses between resistant parents (UM3021 x UM3043). This was probably due to heterozygosity in some parental plants of UM3021. For crosses be tween the susceptible parent and resistant parents, F(1) plants for two crosses were all resistant. For cross UM3132 x UM3021, some susceptible plants occurred, which was also suggestive of heterozygosity in UM3021. Although resistance in F(1) was dominant, for F(2) populations, segregation fit either 13:3, 3:1, or 1:3 ratios, indicating that resistance can be either adominant or recessive trait. F(3) families derived from some susceptible F(2) plants from crosses UM3021 x UM3132 and UM3043 x UM3132 were evaluated using the cotyledon inoculation method only. Segregation of F(2) plants and F(3) families in crosses involving resistant and susceptible parents indicated that the resistance to L. maculans in B. juncea is controlled by two nuclear genes with dominant recessive epistatic gene action.