Complete genome sequence of the Exiguobacterium bacteriophage.

We purified a lytic bacteriophage from soil collected in Guasave, Sinaloa: phiExGM16. This bacteriophage was isolated using the host, Exiguobacterium acetilycum. Its 17.6 kb genome contains 33 putative genes and shows a cover of 64% with 76.37% of nucleotide identity to Microbacterium phage Noelani.

Complete genome sequence of the Microbacterium enclense bacteriophage phiMiGM15.

We characterized the complete genome sequence of phiMiGM15, a lytic bacteriophage with siphovirus morphology that infects Microbacterium enclense. Its 48.6 kb genome contains 81 putative genes and shows coverage of 28% with 82.26% of nucleotide identity to Microbacterium phage Caron accession number OQ190481.1.

The Effect of Opuntia ficus Mucilage Pectin and Citrus aurantium Extract Added to a Food Matrix on the Gut Microbiota of Lean Humans and Humans with Obesity.

Experimental studies have provided evidence that physicochemical interactions in the food matrix can modify the biologically beneficial effects of bioactive compounds, including their effect on gut microbiota. This work aimed to evaluate the effect of a food gel matrix with Opuntia ficus cladodes mucilage pectin and Citrus Aurantium extract on the growth of four beneficial gut bacteria obtained from the fecal microbiota of people who are lean or who have obesity after digestion in the upper digestive system. To accomplish this, a base formulation of Opuntia ficus cladodes mucilage with or without C. aurantium extract was submitted to an ex vivo fecal fermentation in an automatic and robotic intestinal system. The changes in the intestinal microbiota were determined by means of plate culture and 16S sequencing, while short-chain fatty acids (SCFA) produced in the colon were determined via gas chromatography. In the presence of the extract in formulation, greater growth of Bifidobacterium spp. (+1.6 Log10 Colonic Forming Unit, UFC) and Lactobacillus spp. (+2 Log10 UFC) in the microbiota of lean people was observed. Only the growth in Salmonella spp. (-1 Log10 UFC) from both microbiota was affected in the presence of the extract, which decreased in the ascending colon. SCFA was mainly produced by the microbiota of people who were lean rather than those who had obesity in the presence of the extract, particularly in the ascending colon. The effect of sour orange extract seems to depend on the origin of the microbiota, whether in people who have obesity (25 mM/L) or are lean (39 mM/L).

Isolation and identification of proteolytic lactic-acid bacteria of the common carp (Cyprinus carpio) by spontaneous fermentation to obtain functional peptides.

High proteolytic activity and several biological functions (antimicrobial, antioxidant, antihypertensive, among others) have been attributed to lactic-acid bacteria (LAB) isolated from fish and peptides obtained from proteolysis. Therefore, the objective of this research was isolating, characterizing, and identifying LAB with proteolytic activity by spontaneous fermentation from common carp (Cyprinus carpio) reared in ponds and wild ones obtained from Lago de Chapala, Jalisco, Mexico. Spontaneous fermentation from complete carp specimens was observed, considering two sampling points (skin and intestines) at 15 °C at 5 and 10 days. Isolated LAB-from both reared and wild specimens-were identified and morphologically characterized; identification was performed by matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOF MS). Proteolytic activity was assessed by the presence of the proteolytic halo. A total of five genera and eight different LAB proteolytic species were isolated from all the carp samples. At 10 days, greater proteolytic LAB diversity was obtained from the intestine (Tukey's, p < 0.05); the proteolytic halo with the greatest diameter was recorded in wild carp skin with Lactiplantibacillus plantarum S5P2 (2.8 cm) at 5 days of fermentation, followed by Leuconostoc mesenteroides S5I1 (2.73 cm) and Leuconostoc pseudomesenteroides S5P2 (2.66 cm) (p < 0.05). In conclusion, proteolytic capability of LAB isolated from carp (Cyprimus carpio)-both wild and reared-is influenced by the ecosystem where they develop. These proteolytic LAB may be used in biotechnological industries to obtain bioactive peptides by fermenting substrates rich in proteins.

Complete Genome Sequence of Xanthomonas vesicatoria Bacteriophage ΦXaF18, a Contribution to the Biocontrol of Bacterial Spot of Pepper in Mexico.

Bacteriophage ΦXaF18 infects Xanthomonas vesicatoria, which is the causal agent of bacterial spot in tomato (Solanum lycopersicum L.) and pepper (Capsicum annuum L.). In this announcement, we present the complete genome of X. vesicatoria bacteriophage ΦXaF18, a 47,407-bp genome with 67 protein-coding genes.

Complete Genome Sequence of XaF13, a Novel Bacteriophage of Xanthomonas vesicatoria from Mexico.

The phytopathogenic bacterium Xanthomonas vesicatoria is the causative agent of bacterial spot disease in various Solanaceae family members. Here, we describe the complete genome sequence of XaF13, a novel filamentous phage that infects the phytopathogenic bacterium X. vesicatoria The 7,045-bp genome is predicted to encode 14 open reading frames, 7 of which are related to those of other filamentous Xanthomonas phages.

Bactericidal In-Vitro Effect of Zinc Ferrite Nanoparticles and the Orange Wax Extracts on Three Phytopathogen Microorganisms.

Phytopathogenic bacteria affect a wide variety of crops, causing significant economic losses. Natural biocides are the alternative to chemical methods of phytopathogens control. The goal of the present study is the evaluation of the biocidal activity of the following: 1) the extract of orange wax (EOW); 2) zinc ferrite nanoparticles (ZF-NPs); 3) the EOW adsorbed on the ZF-NPs; and 4) the EOW/ZF-NPs washed with 40% ethanol. For the biocidal activity, three phytopathogenic bacteria were used, namely, Xanthomonas axonopodis pv. Vesicatoria (Xav) Erwinia amylovora (Ew), and Pseudomonas syringae pv. Phaseolicola (Psph). For the ZF-NPs, an inhibitory effect higher than 50% ( ) was observed for Xav respect to the antibiotic used as positive control. On the other hand, the ZF-NPs did not show inhibitory effects on both Ew and Psph. In addition, the EOW in dimethyl sulfoxide (DMSO) at 100% caused growth inhibition on Xav, bacteriostatic activity on Ew, and had not biological activity on Psph. To the best of our knowledge, the control of Xav by zinc ferrites and orange wax, and the bacteriostatic effect produced by orange wax extract on Ew have not been reported elsewhere. Orange wax and zinc ferrite nanoparticles show potential in control of phytopathogenic bacteria. However, the bactericidal effect depends on the bacterium, the concentration of treatments, and the method of preparation.

Respuesta a la selección para resistencia a sequía en maíz (Zea mays L.) / drought resistance Selection response in corn (Zea mays L.)

Se estudió la respuesta a la selección masal para componentes del rendimiento de grano y la estabilidad en dos variedades originales de maíz, Zacatecas 58 y Cafime, en las cuales se aplicaron 19 y 16 ciclos de selección masal para resistencia a sequía, respectivamente. Ambos materiales genéticos se evaluaron en dos localidades (Montecillo y Tecámac, Estado de México) con tres ambientes de humedad del suelo (riego, temporal y sequía). Los estimadores del avance genético por ciclo de selección y los parámetros de estabilidad utilizados indican que en el ambiente de sequía se encontraron los avances genéticos más altos por ciclo para ambas variedades, pero la mayor ganancia acumulada en unidades para los caracteres evaluados, se obtuvo en condiciones de riego. Los compuestos de selección de Cafime fueron más consistentes que los de Zacatecas 58. El peso de mazorca promedio por planta se incrementó conforme aumentó el número de ciclos de selección en las dos variedades y de manera concomitante se incrementó el coeficiente de regresión. Se deduce que al aumentar la selección masal visual aumenta el rendimiento y la sensibilidad ambiental lineal (b i), pero no la sensibilidad ambiental no lineal (S²d i). Finalmente, el aumento del rendimiento y de sus componentes estuvo positivamente correlacionado con el coeficiente de regresión lineal del rendimiento sobre el número de ciclos de selección, pero no hubo correlación con las desviaciones de regresión.

The response to masal selection for components of grain yield, and stability, were studied in two original varieties of corn, Zacatecas 58 and Cafime, in which 19 and 16 cycles of masal selection for drought resistance were applied, respectively. Both genetic materials were evaluated in two localities (Montecillo and Tecámac, State of Mexico) in three soil moisture environments (irrigation, rainfall and drought). The genetic advance estimates for a selection cycle and the stability parameters used indicate that in the drought environment the highest genetic advances in a cycle were found for both varieties, but the largest accumulated profit in units for the evaluated traits, was obtained under irrigation conditions. The selection compounds of the Cafime variety were more consistent than those of Zacatecas 58. In both varieties, the ear corn average weight increased as the selection cycle number increased and, thus, the coefficient of regression also increased. It is deduced that an increase of visual masal selection increases the yield and the environmental linear sensibility (b i), but not the environmental nonlinear sensibility (S²d i). Finally, the yield increase and its components were positively correlated with the linear regression coefficient of the yield concerning the selection cycles number, but there was no correlation with the regression deviation.

Estudou-se a resposta à seleção massal para componentes do rendimento de grão e a estabilidade em duas variedades originais de milho, Zacatecas 58 e Cafime, nas quais foram aplicadas 19 e 16 ciclos de seleção massal para resistência à seca, respectivamente. Ambos materiais genéticos foram avaliados em duas localidades (Montecillo e Tecámac, Estado do México) com três ambientes de umidade do solo (irrigação, temporal e seca). Os estimadores do avanço genético por ciclo de seleção e os parâmetros de estabilidade utilizados indicam que no ambiente de seca se encontraram os avanços genéticos mais altos por ciclo para ambas as variedades, mas o maior ganho acumulado em unidades para os caracteres avaliados, foi obtido em condições de irrigação. Os compostos de seleção de Cafime foram mais consistentes que os de Zacatecas 58. O peso médio de espiga por planta se incrementou na medida em que aumentou o número de ciclos de seleção nas duas variedades e de maneira concomitante se incrementou o coeficiente de regressão. É deduzido que ao aumentar a seleção massal visual aumenta o rendimiento e a sensibilidade ambiental linear (b i), mas não a sensibilidade ambiental não linear (S²d i). Finalmente, o aumento do rendimento e de seus componentes esteve positivamente correlacionado com o coeficiente de regressão linear do rendimento sobre o número de ciclos de seleção, mas não houve correlação com as desviações de regressão.

Biogenesis of Fe/S proteins and pathogenicity: IscR plays a key role in allowing Erwinia chrysanthemi to adapt to hostile conditions.

The Erwinia chrysanthemi genome is predicted to encode three systems, Nif, Isc and Suf, known to assist Fe/S cluster biogenesis and the CsdAE cysteine desulphurase. Single iscU, hscA and fdx mutants were found sensitive to paraquat and exhibited reduced virulence on both chicory leaves and Arabidopsis thaliana. Depletion of the whole Isc system led to a pleiotropic phenotype, including sensitivity to both paraquat and 2,2'-dipyridyl, auxotrophies for branched-chain amino acids, thiamine, nicotinic acid, and drastic alteration in virulence. IscR was able to suppress all of the phenotypes listed above in a sufC-dependent manner while depletion of the Isc system led to IscR-dependent activation of the suf operon. No virulence defects were found associated with csdA or nifS mutations. Surprisingly, we found that the sufC mutant was virulent against A. thaliana, whereas its virulence had been found altered in Saintpaulia. Collectively, these results lead us to propose that E. chrysanthemi possess the Fe/S biogenesis strategy suited to the physico-chemical conditions encountered in its host upon infection. In this view, the IscR regulator, which controls both Isc and Suf, is predicted to play a major role in the ability of E. chrysanthemi to colonize a wide array of different plants.