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1.
Mol Phylogenet Evol ; 130: 269-285, 2019 01.
Article in English | MEDLINE | ID: mdl-30359746

ABSTRACT

Habitat discontinuities, temperature gradients, upwelling systems, and ocean currents, gyres and fronts, can affect distributions of species with narrow environmental tolerance or motility and influence the dispersal of pelagic larvae, with effects ranging from the isolation of adjacent populations to connections between them. The coast of the Tropical Eastern Pacific (TEP) is a highly dynamic environment, with various large gyres and upwelling systems, alternating currents and large rocky-habitat discontinuities, which may greatly influence the genetic connectivity of populations in different parts of the coast. Elacatinus puncticulatus is a cryptic, shallow-living goby that is distributed along the continental shore of virtually the entire TEP, which makes it a good model for testing the influence of these environmental characteristics in the molecular evolution of widespread species in this region. A multilocus phylogeny was used to evaluate the influence of habitat gaps, and oceanographic processes in the evolutionary history of E. puncticulatus throughout its geographical range in the TEP. Two well-supported allopatric clades (one with two allopatric subclades) were recovered, the geographic distribution of which does not correspond to any previously proposed major biogeographic provinces. These populations show strong genetic structure and substantial genetic distances between clades and sub-clades (cytb 0.8-7.3%), with divergence times between them ranging from 0.53 to 4.88 Mya, and recent population expansions dated at 170-130 Kya. The ancestral area of all populations appears to be the Gulf of Panama, while several isolation events have formed the phylogeographic patterns evident in this species. Local and regional oceanographic processes as well as habitat discontinuities have shaped the distribution patterns of the genetic lineages along the continental TEP. Large genetic distances, high genetic differentiation, and the results of species-tree and phylogenetic analyses indicate that E. puncticulatus comprises a complex of three allopatric species with an unusual geographic arrangement.


Subject(s)
Biological Evolution , Ecosystem , Fishes/physiology , Tropical Climate , Animals , Bayes Theorem , Databases, Genetic , Evolution, Molecular , Haplotypes/genetics , Pacific Ocean , Panama , Phylogeny , Phylogeography , Sequence Analysis, DNA , Species Specificity , Time Factors
2.
Sci Rep ; 8(1): 4920, 2018 03 20.
Article in English | MEDLINE | ID: mdl-29559694

ABSTRACT

Mesophotic coral ecosystems, which occur at depths of ~40 to 150 m, have received recent scientific attention as potential refugia for organisms inhabiting deteriorating shallow reefs. These ecosystems merit research in their own right, as they harbor both depth-generalist species and a distinctive reef-fish fauna. Reef ecosystems just below the mesophotic are globally underexplored, and the scant recent literature that mentions them often suggests that mesophotic ecosystems transition directly into those of the deep sea. Through submersible-based surveys in the Caribbean Sea, we amassed the most extensive database to date on reef-fish diversity between ~40 and 309 m at any single tropical location. Our data reveal a unique reef-fish assemblage living between ~130 and 309 m that, while taxonomically distinct from shallower faunas, shares strong evolutionary affinities with them. Lacking an existing name for this reef-faunal zone immediately below the mesophotic but above the deep aphotic, we propose "rariphotic." Together with the "altiphotic," proposed here for the shallowest reef-faunal zone, and the mesophotic, the rariphotic is part of a depth continuum of discrete faunal zones of tropical reef fishes, and perhaps of reef ecosystems in general, all of which warrant further study in light of global declines of shallow reefs.


Subject(s)
Ecosystem , Fishes/physiology , Refugium , Animals , Biodiversity , Biological Evolution , Caribbean Region , Coral Reefs , Databases, Factual , Oceans and Seas
3.
Mol Ecol ; 20(2): 219-34, 2011 Jan.
Article in English | MEDLINE | ID: mdl-21143329

ABSTRACT

We used a population genetic approach to quantify major population subdivisions and patterns of migration within a broadly distributed Indo-Pacific parrotfish. We genotyped 15 microsatellite loci in Scarus rubroviolaceus collected from 20 localities between Africa and the Americas. A STRUCTURE model indicates the presence of four major populations: Eastern Pacific, Hawaii, Central-West Pacific and a less well-differentiated Indian Ocean. We used the isolation and migration model to estimate splitting times, population sizes and migration patterns between sister population pairs. To eliminate loci under selection, we used BayeScan to select loci for three isolation and migration models: Eastern Pacific and Central-West Pacific, Hawaii and the Central-West Pacific, and Indian Ocean and the Central-West Pacific. To test the assumption of a stepwise mutation model (SMM), we used likelihood to test the SMM against a two-phase model that allowed mutational complexity. A posteriori, minor departures from SMM were estimated to affect ≤2% of the alleles in the data. The data were informative about the contemporary and ancestral population sizes, migration rates and the splitting time in the eastern Pacific/Central-West Pacific comparison. The model revealed a splitting time ∼17,000 BP, a larger contemporary N(e) in the Central-West Pacific than in the eastern Pacific and a strong bias of east to west migration. These characteristics support the Center of Accumulation model of peripatric diversification in low-diversity peripheral sites and perhaps migration from those sites to the western Pacific diversity hotspot.


Subject(s)
Animal Migration , Genetic Speciation , Genetic Variation , Perciformes/genetics , Animals , Gene Flow , Genotype , Indian Ocean , Metagenomics , Microsatellite Repeats , Mutation , Pacific Ocean , Phylogeny , Population Density , Population Dynamics
4.
Mar Biol ; 156(4): 679-687, 2009.
Article in English | MEDLINE | ID: mdl-32921818

ABSTRACT

We tested whether vicariance or dispersal was the likely source of speciation in the genus Clepticus by evaluating the evolutionary timing of the effect of the mid-Atlantic barrier, which separates C. brasiliensis and C. africanus, and the Amazon barrier, which separates C. parrae and C brasiliensis. Genetic data from three mitochondrial genes and one nuclear gene were used. Mitochondrial genes separated Clepticus into three well supported clades corresponding to the three recognized allopatric morpho-species. All analyses provided consistent support for an initial separation (~9.68 to 1.86 mya; 4.84% sequence divergence) of the Caribbean and South Atlantic lineages, followed by a much more recent divergence (~ 0.60 to 0.12 mya; 0.3% sequence divergence) of the Brazilian and African sister morpho-species. Both these phylogenetic events occurred well after the formation of the two barriers that currently separate those three allopatric populations. The planktonic larval duration of these species (35-49 days) and coastal pelagic habits may have facilitated dispersal by this genus across those dispersal barriers after they formed.

5.
Mol Phylogenet Evol ; 49(2): 629-38, 2008 Nov.
Article in English | MEDLINE | ID: mdl-18804542

ABSTRACT

We used the mitochondrial control region and a comparative approach to study the genetic population structure of two surgeonfishes, Naso brevirostris and Naso unicornis, across their Indo-central Pacific ranges. Our purpose was to compare our results with those of a previous study of Naso vlamingii [Klanten, S.O., van Herwerden, L., Choat J.H., 2007. Extreme genetic diversity and temporal rather than spatial partitioning in a widely distributed coral reef fish. Mar. Biol. 150, 659-670] another widely distributed Indo-central Pacific Naso species. We found no evidence of a barrier to gene flow between the Indian and Pacific Oceans for either species, consistent with what was shown for N. vlamingii. Overall, both target species lacked spatial population partitions and probably have complex patterns of gene flow on several spatial scales. Despite the lack of geographic population structure distinct clades were observed in N. brevirostris, similar to those found in N. vlamingii. Coalescence times for intraspecific clades of N. brevirostris and N. vlamingii approximate each other, suggesting parallel evolutionary histories. A bimodal mismatch distribution in N. brevirostris indicates that a biogeographic barrier separated N. brevirostris populations sometime during its species history. Naso unicornis, in contrast, lacked genetic structure of any kind, although it has what could represent a single surviving clade. Congruent lack of spatial population structure among all three species suggest that such patterns are not due to stochastic processes of DNA mutation and are most likely driven by ecological and environmental factors.


Subject(s)
Genetics, Population , Perciformes/classification , Perciformes/genetics , Phylogeny , Animals , Bayes Theorem , DNA, Mitochondrial/genetics , Female , Gene Flow , Genetic Speciation , Genetic Variation , Geography , Likelihood Functions , Markov Chains , Mitochondria/genetics , Models, Genetic , Monte Carlo Method , Pacific Ocean , Sequence Alignment , Sequence Analysis, DNA , Species Specificity
6.
Proc Biol Sci ; 273(1598): 2201-8, 2006 Sep 07.
Article in English | MEDLINE | ID: mdl-16901840

ABSTRACT

The 'impassable' Eastern Pacific Barrier (EPB), ca 5000 km of deep water separating the eastern from the central Pacific, is the World's widest marine biogeographic barrier. Sequencing of mitochondrial DNA in 20 reef fish morphospecies encountered on both sides of the barrier revealed cryptic speciation in two. Among the other 18 species only two showed significant differentiation (as revealed by haplotype networks and FST statistics) between the eastern and the central Pacific. Coalescence analyses indicated that genetic similarity in the 18 truly transpacific species resulted from different combinations of ages of most recent invasion and of levels of recurrent gene flow, with estimated times of initial separation ranging from approximately 30000 to 1 Myr (ago). There is no suggestion of simultaneous interruptions of gene flow among the species. Migration across the EPB was previously thought to be exclusively eastward, but our evidence showed two invasions from east to west and eight cases in which subsequent gene flow possibly proceeded in the same direction. Thus, the EPB is sporadically permeable to propagules originating on either side.


Subject(s)
Demography , Fishes/genetics , Genetic Speciation , Genetics, Population , Phylogeny , Analysis of Variance , Animals , Base Sequence , DNA, Mitochondrial/genetics , Evolution, Molecular , Geography , Haplotypes/genetics , Molecular Sequence Data , Pacific Ocean , Population Dynamics , Sequence Analysis, DNA
7.
Evolution ; 57(9): 2026-36, 2003 Sep.
Article in English | MEDLINE | ID: mdl-14575324

ABSTRACT

To understand how allopatric speciation proceeds, we need information on barriers to gene flow, their antiquity, and their efficacy. For marine organisms with planktonic larvae, much of this information can only be obtained through the determination of divergence between populations. We evaluated the importance of ocean barriers by studying the mitochondrial DNA phylogeography of Tripneustes, a pantropical genus of shallow water sea urchin. A region of cytochrome oxidase I (COI) was sequenced in 187 individuals from locations around the globe. The COI phylogeny agreed with a previously published phylogeny of bindin that barriers important to the evolution of Tripneustes are: (1) the cold water upwelling close to the tip of South Africa, (2) the Isthmus of Panama, (3) the long stretch of deep water separating the eastern from the western Atlantic, and (4) the freshwater plume of the Orinoco and the Amazon rivers between the Caribbean and the coast of Brazil. These barriers have previously been shown to be important in at least a subset of the shallow water marine organisms in which phylogeography has been studied. In contrast, the Eastern Pacific Barrier, 5000 km of deep water between the central and the eastern Pacific that has caused the deepest splits in other genera of sea urchins, is remarkably unimportant as a cause of genetic subdivision in Tripneustes. There is also no discernible subdivision between the Pacific and Indian Ocean populations of this genus. The most common COI haplotype is found in the eastern, central, and western Pacific as well as the Indian Ocean. Morphology, COI, and bindin data agree that T. depressus from the eastern Pacific and T. gratilla from the western Pacific are, in fact, the same species. The distribution of haplotype differences in the Indo-Pacific exhibits characteristics expected from a sea urchin genus with ephemeral local populations, but with high fecundity, dispersal, and growth: there is little phylogenetic structure, and mismatch distributions conform to models of recent population expansion on a nearly global scale. Yet, comparisons between local populations produce large and significant F(ST) values, indicating nonrandom haplotype distribution. This apparent local differentiation is only weakly reflected in regional divergence, and there is no evidence of isolation by distance in correlations between F(ST) values and either geographical or current distance. Thus, Tripneustes in the Indo-Pacific (but not in the Atlantic) seems to be one large metapopulation spanning two oceans and containing chaotic, nonequilibrium local variation, produced by the haphazard arrival of larvae or by unpredictable local extinction.


Subject(s)
Genetics, Population , Geography , Movement/physiology , Phylogeny , Sea Urchins/genetics , Animals , DNA Primers , Electron Transport Complex IV/genetics , Haplotypes , Larva/physiology , Oceans and Seas , Sea Urchins/physiology , Sequence Analysis, DNA , Species Specificity
8.
Rev. biol. trop ; 49(Supl.1): 13-19, jul. 2001. ilus
Article in English | LILACS | ID: lil-502477

ABSTRACT

Aplatophis zorro n. sp., the first known eastern Pacific species of this New World genus, is described from a shallow water trawl-caught specimen from the Golfo de San Miguel, Pacific Panama. It is similar to its only known congener, A. chauliodus from the tropical western Atlantic, but differs in its vertebral number, dentition, coloration, and other characters. Comments concerning the distribution of New World ophichthids are provided.


Subject(s)
Animals , Male , Eels/classification , Eels/anatomy & histology , Pacific Ocean , Panama
9.
Evolution ; 55(5): 1029-39, 2001 May.
Article in English | MEDLINE | ID: mdl-11430639

ABSTRACT

The distribution of circumtropical marine species is limited by continental boundaries, cold temperate conditions, and oceanic expanses, but some of these barriers are permeable over evolutionary time scales. Sister taxa that evolved in separate ocean basins can come back into contact, and the consequences of this renewed sympatry may be a key to understanding evolutionary processes in marine organisms. The circumtropical trumpetfishes (Aulostomus) include a West Atlantic species (A. maculatus), an Indian-Pacific species (A. chinensis), and an East Atlantic species (A. strigosus) that may be the product of a recent invasion from the Indian Ocean. To resolve patterns of divergence and speciation, we surveyed 480 bp of mitochondrial DNA cytochrome b in 196 individuals from 16 locations. Based on a conventional molecular clock of 2% sequence divergence per million years, the deepest partitions in a neighbor-joining tree (d = 0.063-0.082) are consistent with separation of West Atlantic and Indian-Pacific species by the Isthmus of Panama, 3-4 million years ago. By the same criteria, trumpetfish in the East Atlantic were isolated from the Indian Ocean about 2.5 million years ago (d = 0.044-0.054), coincident with the advent of glacial cycles and cold-water upwelling around South Africa. Continental barriers between tropical oceans have only rarely been surmounted by trumpetfishes, but oceanic barriers do not appear to be substantial, as indicated by weak population partitioning (phiST = 0.093) in A. chinensis across the Indian and Pacific Oceans. Finally, morphological and mitochondrial DNA data indicate hybridization of A. strigosus and A. maculatus in Brazil. After 3-4 million years and a globe-spanning series of vicariant and dispersal events, trumpetfish lineages have come back into contact in the southwest Atlantic and appear to be merging. This ring species phenomenon may occur in a broad array of marine organisms, with clear implications for the production and maintenance of biodiversity in marine ecosystems.


Subject(s)
Fishes/genetics , Phylogeny , Animals , Base Sequence , Climate , Cytochrome b Group/genetics , DNA Primers/genetics , DNA, Mitochondrial/genetics , Ecosystem , Evolution, Molecular , Genetic Variation , Genetics, Population , Marine Biology , Models, Genetic , Polymorphism, Genetic , Species Specificity
10.
Evolution ; 55(3): 561-72, 2001 Mar.
Article in English | MEDLINE | ID: mdl-11327163

ABSTRACT

Many tropical reef fishes are divided into Atlantic and East Pacific taxa, placing similar species in two very different biogeographic regimes. The tropical Atlantic is a closed ocean basin with relatively stable currents, whereas the East Pacific is an open basin with unstable oceanic circulation. To assess how evolutionary processes are influenced by these differences in oceanography and geography, we analyze a 630-bp region of mitochondrial cytochrome b from 171 individuals in the blenniid genus Ophioblennius. Our results demonstrate deep genetic structuring in the Atlantic species, O. atlanticus, corresponding to recognized biogeographic provinces, with divergences of d = 5.2-12.7% among the Caribbean, Brazilian, St. Helena/Ascension Island, Gulf of Guinea, and Azores/Cape Verde regions. The Atlantic phylogeny is consistent with Pliocene dispersal from the western to eastern Atlantic, and the depth of these separations (along with prior morphological comparisons) may indicate previously unrecognized species. The eastern Pacific species, O. steindachneri, is characterized by markedly less structure than O. atlanticus, with shallow mitochondrial DNA lineages (dmax = 2.7%) and haplotype frequency shifts between locations in the Sea of Cortez, Pacific Panama, Clipperton Island, and the Galapagos Islands. No concordance between genetic structure and biogeographic provinces was found for O. steincdachneri. We attribute the phylogeographic pattern in O. atlanticus to dispersal during the reorganization of Atlantic circulation patterns that accompanied the shoaling of the Isthmus of Panama. The low degree of structure in the eastern Pacific is probably due to unstable circulation and linkage to the larger Pacific Ocean basin. The contrast in genetic signatures between Atlantic and eastern Pacific blennies demonstrates how differences in geology and oceanography have influenced evolutionary radiations within each region.


Subject(s)
Evolution, Molecular , Fishes/genetics , Genetic Variation , Phylogeny , Animals , Atlantic Ocean , Cytochrome b Group/genetics , DNA, Mitochondrial/genetics , Environment , Fishes/classification , Oceans and Seas , Pacific Ocean , Polymerase Chain Reaction , Sequence Analysis, DNA
11.
Proc Natl Acad Sci U S A ; 98(10): 5667-70, 2001 May 08.
Article in English | MEDLINE | ID: mdl-11331752

ABSTRACT

To what extent do local populations of tropical reef fishes persist through the recruitment of pelagic larvae to their natal reef? Endemics from small, isolated islands can help answer that question by indicating whether special biological attributes are needed for long-term survival under enforced localization in high-risk situations. Taxonomically and biologically, the endemics from seven such islands are broadly representative of their regional faunas. As natal-site recruitment occurs among reef fishes in much less isolated situations, these characteristics of island endemics indicate that a wide range of reef fishes could have persistent self-sustaining local populations. Because small islands regularly support substantial reef fish faunas, regional systems of small reserves could preserve much of the diversity of these fishes.


Subject(s)
Fishes/growth & development , Population Dynamics , Animals , Fishes/classification , Species Specificity
12.
Cardiovasc Toxicol ; 1(3): 225-35, 2001.
Article in English | MEDLINE | ID: mdl-12213975

ABSTRACT

Widespread external and internal changes in body morphology have long been known to be hallmarks of the process of metamorphosis. However, more subtle changes, particularly at the molecular level, are only now beginning to be understood. A number of transcription factors have recently been shown to alter expression either in levels of message or in isoforms expressed. In this article, we describe a dramatic increase in the expression of the homeobox gene HoxA5 in the heart and aorta of the Mexican axolotl Ambystoma mexicanum during the process of thyroxin-induced metamorphosis. Immunohistochemical analysis with anti-HoxA5 antibody in thyroxin-induced metamorphosing animals showed a pattern of expression of HoxA5 comparable to that in spontaneously metamorphosing animals. Further, by in situ hybridization, we were able to show significant qualitative differences in the expression of this gene within the heart. Maximum HoxA5 expression occurred at the midpoint of metamorphosis in the myocardium, whereas the hearts of completely metamorphosed animals had the highest levels of expression in the epicardium and endocardium. In the aorta, smooth-muscle cells of the tunica media as well as cells of the tunica adventitia had an increase in expression of HoxA5 with thyroxin-induced metamorphosis. HoxA5 expression significantly changed in cells of the aorta and ventricle with treatment by thyroid hormone. HoxA5, a positive regulator of p53, may be involved with the apoptotic pathway in heart remodeling during amphibian metamorphosis.


Subject(s)
Ambystoma/physiology , Homeodomain Proteins/biosynthesis , Metamorphosis, Biological/drug effects , Metamorphosis, Biological/genetics , Myocardium/metabolism , Phosphoproteins/biosynthesis , Thyroxine/pharmacology , Up-Regulation/drug effects , Animals , Heart/drug effects , Heart/physiology , Homeodomain Proteins/genetics , Immunohistochemistry , In Situ Hybridization , Phosphoproteins/genetics , Reverse Transcriptase Polymerase Chain Reaction
13.
Rev Biol Trop ; 49 Suppl 1: XII-XIV, 2001 Jul.
Article in English | MEDLINE | ID: mdl-15260146
14.
Rev Biol Trop ; 49 Suppl 1: 13-9, 2001 Jul.
Article in English | MEDLINE | ID: mdl-15260149

ABSTRACT

Aplatophis zorro n. sp., the first known eastern Pacific species of this New World genus, is described from a shallow water trawl-caught specimen from the Golfo de San Miguel, Pacific Panama. It is similar to its only known congener, A. chauliodus from the tropical western Atlantic, but differs in its vertebral number, dentition, coloration, and other characters. Comments concerning the distribution of New World ophichthids are provided.


Subject(s)
Eels/classification , Animals , Eels/anatomy & histology , Male , Pacific Ocean , Panama
15.
Rev Biol Trop ; 49 Suppl 1: 81-8, 2001 Jul.
Article in English | MEDLINE | ID: mdl-15260156

ABSTRACT

Paranebris bauchotae, a new genus and species of sciaenid from the Gulf of Panama is described from three specimens (138-212 mm SL). It is distinguished from all other sciaenids by having granulated tooth plates on the jaws and the premaxillary tooth plates that are exposed laterally of the lower jaw when the mouth is closed. The new genus shares the following characters with the New World genus Nebris: a thick fleshy and cartilage gap present between premaxillary bones where the ascending processes form an A-frame arch; gas bladder with a pair of long U-shaped appendages; and a thick, oval-shaped sagitta with deeply grooved caudal section of the sulcus. Paranebris bauchotae is distinct from all Nebris species in having a firmer interorbital skin and scale cover (spongy to the touch in Nebris), a larger eye (6-7 vs. 8-12 times in head length) and large ctenoid scales (vs. small and cycloid in Nebris).


Subject(s)
Perciformes/classification , Animals , Female , Pacific Ocean , Panama , Perciformes/anatomy & histology
16.
Rev Biol Trop ; 49 Suppl 1: 111-5, 2001 Jul.
Article in English | MEDLINE | ID: mdl-15260159

ABSTRACT

Ammodytoides gilli (Bean, 1895) is the correct name for the tropical eastern Pacific sand lance. Its range is extended from Cabo San Lucas, Baja California south to Panama, Ecuador, and the Galapagos Islands. Ammodytes lucasanus Beebe and Tee-Van, 1938 is a junior synonym. Types of both nominal species were re-examined. The species is redescribed based on 50 specimens (42.3-115 mm SL) from 12 lots and is compared with other known species of Ammodytoides. Changes in ontogeny from the smallest known specimen (42.3 mm SL, illustrated) are detailed including reduction in the posterior dorsal fin lobe and development of branched dorsal and anal fin rays.


Subject(s)
Perciformes/classification , Animals , Pacific Ocean , Perciformes/anatomy & histology
17.
Mol Phylogenet Evol ; 15(2): 292-300, 2000 May.
Article in English | MEDLINE | ID: mdl-10837158

ABSTRACT

Parrotfishes of the genus Sparisoma (Scaridae) are ecologically important tropical reef fishes restricted to the Atlantic Ocean. We investigated phylogenetic relationships among the eight extant species within this genus using mitochondrially encoded 12S and 16S ribosomal genes. Our molecular data support the view that (i) Sparisoma originated approximately 14-35 million years ago (mya), probably in the tropical western Atlantic, off Brazil; (ii) there have been at least four discrete bouts of cladogenesis within the genus, with the most recent one ( approximately 2.8-5.6 mya) involving four events in both the east and the west Atlantic and across the Atlantic; and (iii) the genus invaded the eastern Atlantic on two different occasions, probably by at least two different routes. The data also offer support for Bellwood's ideas concerning the evolutionary changes in adult feeding patterns and habitat use within Scarids. Specifically, they support the evolutionary position of the ecological traits of Sparisoma as intermediate within the family.


Subject(s)
Fishes/classification , Phylogeny , Animals , Feeding Behavior , Fishes/genetics , Fishes/physiology , Geography , Polymerase Chain Reaction
18.
Cell Tissue Res ; 297(2): 283-90, 1999 Aug.
Article in English | MEDLINE | ID: mdl-10470498

ABSTRACT

Amphibians occupy a central position in phylogeny between aquatic and terrestrial vertebrates and are widely used as model systems for studying vertebrate development. We have undertaken a comprehensive molecular approach to understand the early events related to embryonic development in the Mexican axolotl, Ambystoma mexicanum, which is an exquisite animal model for such explorations. Axolotl RBP is a RNA-binding protein which was isolated from the embryonic Mexican axolotl by subtraction hybridization and was found to show highest similarity with human, mouse, and Xenopus cold-inducible RNA-binding protein (CIRP). The reverse transcriptase polymerase chain reaction (RT-PCR) analysis suggests that it is expressed in most of the axolotl tissues except liver; the expression level appears to be highest in adult brain. We have also determined the temporal and spatial pattern of its expression at various stages of development. RT-PCR and in situ hybridization analyses indicate that expression of the AxRBP gene starts at stage 10-12 (gastrula), reaches a maxima around stage 15-20 (early tailbud), and then gradually declines through stage 40 (hatching). In situ hybridization suggests that the expression is at a maximum in neural plate and neural fold at stage 15 (neurula) of embryonic development.


Subject(s)
Embryo, Nonmammalian/metabolism , Gene Expression Regulation, Developmental/physiology , RNA-Binding Proteins/genetics , Ambystoma/embryology , Ambystoma/metabolism , Animals , Blotting, Northern , Embryonic Development , Humans , In Situ Hybridization , Mice , Models, Biological , Reverse Transcriptase Polymerase Chain Reaction , Xenopus
19.
J Parasitol ; 85(2): 337-53, 1999 Apr.
Article in English | MEDLINE | ID: mdl-10219318

ABSTRACT

We describe Kudoa ovivora n. sp. from ovaries of bluehead wrasse, Thalassoma bifasciatum, and record its presence in 6 species (Labroidei) collected in the San Blas Islands. Panama. Kudoa ovivora spores are quadrate with rounded edges in apical view, oval-shaped with apical valve extensions in side view (mean spore dimensions: length 6.5 microns, width 7.7 microns, thickness 6.9 microns; mean polar capsule dimensions: length 2.1 microns, width 1.5 microns). This is the first Kudoa species from gonads of fishes. Prevalence of infection varied among labrids (Thalassoma bifasciatum, Halichoeres bivittatus, Halichoeres garnoti, Halichoeres poevi), with T. bifasciatum exhibiting the greatest prevalence. Density of infection, measured as percent infected eggs, also varied among species with highest densities occurring in H. garnoti. Kudoa ovivora may not require an intermediate host because fishes fed infected tissue developed more infections than unfed fish. Infected eggs are inviable and larger and heavier than uninfected eggs. Infected eggs contain more organic and inorganic material, indicating that K. ovivora increases resource allocation to eggs. Therefore, infected females may have reduced growth, fecundity, and/or spawning activity. Because males were uninfected and all identified hosts are protogynous sequential hermaphrodites, further studies of K. ovivora may provide new insights on the costs/benefits of sex change.


Subject(s)
Eukaryota/classification , Eukaryota/growth & development , Fish Diseases/parasitology , Protozoan Infections, Animal/parasitology , Animals , Eukaryota/cytology , Eukaryota/pathogenicity , Fish Diseases/pathology , Fish Diseases/transmission , Fishes , Host-Parasite Interactions , Protozoan Infections, Animal/pathology , Protozoan Infections, Animal/transmission , Terminology as Topic
20.
Evolution ; 53(3): 806-817, 1999 Jun.
Article in English | MEDLINE | ID: mdl-28565646

ABSTRACT

The pantropical sea urchin genus Eucidaris contains four currently recognized species, all of them allopatric: E. metularia in the Indo-West Pacific, E. thouarsi in the eastern Pacific, E. tribuloides in both the western and eastern Atlantic, and E. clavata at the central Atlantic islands of Ascension and St. Helena. We sequenced a 640-bp region of the cytochrome oxidase I (COI) gene of mitochondrial DNA to determine whether this division of the genus into species was confirmed by molecular markers, to ascertain their phylogenetic relations, and to reconstruct the history of possible dispersal and vicariance events that led to present-day patterns of species distribution. We found that E. metularia split first from the rest of the extant species of the genus. If COI divergence is calibrated by the emergence of the Isthmus of Panama, the estimated date of the separation of the Indo-West Pacific species is 4.7-6.4 million years ago. This date suggests that the last available route of genetic contact between the Indo-Pacific and the rest of the tropics was from west to east through the Eastern Pacific Barrier, rather than through the Tethyan Sea or around the southern tip of Africa. The second cladogenic event was the separation of eastern Pacific and Atlantic populations by the Isthmus of Panama. Eucidaris at the outer eastern Pacific islands (Galapagos, Isla del Coco, Clipperton Atoll) belong to a separate clade, so distinct from mainland E. thouarsi as to suggest that this is a different species, for which the name E. galapagensis is revived from the older taxonomic literature. Complete lack of shared alleles in three allozyme loci between island and mainland populations support their separate specific status. Eucidaris galapagensis and E. thouarsi are estimated from their COI divergence to have split at about the same time that E. thouarsi and E. tribuloides were being separated by the Isthmus of Panama. Even though currents could easily convey larvae between the eastern Pacific islands and the American mainland, the two species do not appear to have invaded each other's ranges. Conversely, the central Atlantic E. clavata at St. Helena and Ascension is genetically similar to E. tribuloides from the American and African coasts. Populations on these islands are either genetically connected to the coasts of the Atlantic or have been colonized by extant mitochondrial DNA lineages of Eucidaris within the last 200,000 years. Although it is hard to explain how larvae can cross the entire width of the Atlantic within their competent lifetimes, COI sequences of Eucidaris from the west coast of Africa are very similar to those of E. tribuloides from the Caribbean. FST statistics indicate that gene flow between E. metularia from the Indian Ocean and from the western and central Pacific is restricted. Low gene flow is also evident between populations of E. clavata from Ascension and St. Helena. Rates of intraspecific exchange of genes in E. thouarsi, E. galapagensis, and E. tribuloides, on the other hand, are high. The phylogeny of Eucidaris confirms Ernst Mayr's conclusions that major barriers to the dispersal of tropical echinoids have been the wide stretch of deep water between central and eastern Pacific, the cold water off the southwest coast of Africa, and the Isthmus of Panama. It also suggests that a colonization event in the eastern Pacific has led to speciation between mainland and island populations.

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