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1.
Biophys J ; 88(5): 3434-43, 2005 May.
Article in English | MEDLINE | ID: mdl-15749774

ABSTRACT

Hydrophobins are a class of small proteins that fulfill a wide spectrum of functions in fungal growth and development. They do so by self-assembling into an amphipathic membrane at hydrophilic-hydrophobic interfaces. The SC3 hydrophobin of Schizophyllum commune is the best-studied hydrophobin. It assembles at the air-water interface into a membrane consisting of functional amyloid fibrils that are called rodlets. Here we examine the dynamics of SC3 assembly at an oil-water and air-water interface and the permeability characteristics of the assembled layer. Hydrophobin assembled at an oil-water interface is a dynamic system capable of emulsifying oil. It accepts soluble-state SC3 oligomers from water in a unidirectional process and sloughs off SC3 vesicles back into the water phase enclosing a portion of the oil phase in their hydrophobic interior. The assembled layer is impermeable to solutes >200 Da from either the water phase or the oil phase; however, due to the emulsification process, oil and the hydrophobic marker molecules in the oil phase can be transferred into the water phase, thus giving the impression that the assembled layer is permeable to the marker molecules. By contrast, the layer assembled at an air-water interface is permeable to water vapor from either the hydrophobic or hydrophilic side.


Subject(s)
Biophysics/methods , Fungal Proteins/chemistry , Membranes/chemistry , Thiazoles/chemistry , Air , Amyloid beta-Peptides/chemistry , Benzothiazoles , Membrane Proteins/chemistry , Membranes/metabolism , Microscopy, Confocal , Microscopy, Fluorescence , Octoxynol/pharmacology , Oils/chemistry , Paraffin , Permeability , Protein Conformation , Protein Structure, Secondary , Schizophyllum/metabolism , Time Factors , Water/chemistry
2.
Biophys J ; 87(3): 1919-28, 2004 Sep.
Article in English | MEDLINE | ID: mdl-15345568

ABSTRACT

The fungal class I hydrophobin SC3 self-assembles into an amphipathic membrane at hydrophilic-hydrophobic interfaces such as the water-air and water-Teflon interface. During self-assembly, the water-soluble state of SC3 proceeds via the intermediate alpha-helical state to the stable end form called the beta-sheet state. Self-assembly of the hydrophobin at the Teflon surface is arrested in the alpha-helical state. The beta-sheet state can be induced at elevated temperature in the presence of detergent. The structural changes of SC3 were monitored by various mass spectrometry techniques. We show that the so-called second loop of SC3 (C39-S72) has a high affinity for Teflon. Binding of this part of SC3 to Teflon was accompanied by the formation of alpha-helical structure and resulted in low solvent accessibility. The solvent-protected region of the second loop extended upon conversion to the beta-sheet state. In contrast, the C-terminal part of SC3 became more exposed to the solvent. The results indicate that the second loop of class I hydrophobins plays a pivotal role in self-assembly at the hydrophilic-hydrophobic interface. Of interest, this loop is much smaller in case of class II hydrophobins, which may explain the differences in their assembly.


Subject(s)
Fungal Proteins/chemistry , Mass Spectrometry/methods , Air , Amino Acid Sequence , Circular Dichroism , Detergents/pharmacology , Endopeptidases/pharmacology , Formates/chemistry , Kinetics , Metalloendopeptidases , Molecular Sequence Data , Oxygen/metabolism , Pepsin A/pharmacology , Peptides/chemistry , Polytetrafluoroethylene/chemistry , Protein Binding , Protein Conformation , Protein Structure, Secondary , Protein Structure, Tertiary , Sequence Homology, Amino Acid , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Temperature , Time Factors , Water
3.
Protein Sci ; 11(5): 1172-81, 2002 May.
Article in English | MEDLINE | ID: mdl-11967373

ABSTRACT

The hydrophobin SC3 belongs to a class of small proteins functioning in the growth and development of fungi. Its unique amphipathic property and remarkable surface activity make it interesting not only for biological studies but also for medical and industrial applications. Biophysical studies have revealed that SC3 possesses at least three distinct conformations, named "soluble-state SC3" for the protein in solution, and "alpha-helical-state SC3" and "beta-sheet-state SC3" for the different states of the protein associated at a hydrophobic-water interface. The present fluorescence study shows that the microenvironment of the dansyl-labeled N terminus of soluble-state SC3 is relatively hydrophobic, whereas it is hydrophilic for alpha-helical-state and beta-sheet-state SC3. Fluorescence collisional quenching indicates that the N terminus of soluble-state SC3 is more solvent-accessible than those of alpha-helical-state and beta-sheet-state SC3, with Stern-Volmer constants for acrylamide of 4.63, 0.02, and 0.2 M(-1) for the different states, respectively. Fluorescence resonance energy transfer measurements show that soluble-state SC3 tends to associate in solution but dissociates in TFA. Fluorescence energy transfer was eliminated by conversion of soluble-state SC3 to alpha-helical-state SC3 on a hydrophobic surface, indicating a spatial separation of the molecules in this state. By inducing the beta-sheet state, structural changes were observed, both by CD and by fluorescence, that could be fit to two exponentials with lifetimes of about 10 min and 4 h. Molecules in the beta-sheet state also underwent a slow change in spatial proximity on the hydrophobic surface, as revealed by the reappearance of fluorescence resonance energy transfer in time.


Subject(s)
Fungal Proteins/chemistry , Circular Dichroism , Energy Transfer , Fungal Proteins/isolation & purification , Kinetics , Protein Folding , Protein Structure, Secondary , Spectrometry, Fluorescence
4.
J Mol Biol ; 308(5): 993-1009, 2001 May 18.
Article in English | MEDLINE | ID: mdl-11352587

ABSTRACT

The determination by NMR of the solution structure of the phosphorylated enzyme IIB (P-IIB(Chb)) of the N,N'-diacetylchitobiose-specific phosphoenolpyruvate-dependent phosphotransferase system of Escherichia coli is presented. Most of the backbone and side-chain resonances were assigned using a variety of mostly heteronuclear NMR experiments. The remaining resonances were assigned with the help of the structure calculations.NOE-derived distance restraints were used in distance geometry calculations followed by molecular dynamics and simulated annealing protocols. In addition, combinations of ambiguous restraints were used to resolve ambiguities in the NOE assignments. By combining sets of ambiguous and unambiguous restraints into new ambiguous restraints, an error function was constructed that was less sensitive to information loss caused by assignment uncertainties. The final set of structures had a pairwise rmsd of 0.59 A and 1.16 A for the heavy atoms of the backbone and side-chains, respectively. Comparing the P-IIB(Chb) solution structure with the previously determined NMR and X-ray structures of the wild-type and the Cys10Ser mutant shows that significant differences between the structures are limited to the active-site region. The phosphoryl group at the active-site cysteine residue is surrounded by a loop formed by residues 10 through 16. NOE and chemical shift data suggest that the phosphoryl group makes hydrogen bonds with the backbone amide protons of residues 12 and 15. The binding mode of the phosphoryl group is very similar to that of the protein tyrosine phosphatases. The differences observed are in accordance with the presumption that IIB(Chb) has to be more resistant to hydrolysis than the protein tyrosine phosphatases. We propose a proton relay network by which a transfer occurs between the cysteine SH proton and the solvent via the hydroxyl group of Thr16.


Subject(s)
Cysteine/metabolism , Disaccharides/metabolism , Escherichia coli/enzymology , Nuclear Magnetic Resonance, Biomolecular , Phosphoenolpyruvate Sugar Phosphotransferase System/chemistry , Phosphoenolpyruvate Sugar Phosphotransferase System/metabolism , Binding Sites , Crystallography, X-Ray , Hydrogen Bonding , Models, Molecular , Mutation , Phosphoenolpyruvate Sugar Phosphotransferase System/genetics , Phosphorylation , Protein Structure, Secondary , Protons , Solvents , Substrate Specificity , Thermodynamics
5.
J Biol Chem ; 276(16): 12756-63, 2001 Apr 20.
Article in English | MEDLINE | ID: mdl-11278734

ABSTRACT

Part of the dimer and B/C domain interface of the Escherichia coli mannitol permease (EII(mtl)) has been identified by the generation of disulfide bridges in a single-cysteine EII(mtl), with only the activity linked Cys(384) in the B domain, and in a double-cysteine EII(mtl) with cysteines at positions 384 and 124 in the first cytoplasmic loop of the C domain. The disulfide bridges were formed in the enzyme in inside-out membrane vesicles and in the purified enzyme by oxidation with Cu(II)-(1,10-phenanthroline)(3), and they were visualized by SDS-polyacrylamide gel electrophoresis. Discrimination between possible disulfide bridges in the dimeric double-cysteine EII(mtl) was done by partial digestion of the protein and the formation of heterodimers, in which the cysteines were located either on different subunits or on one subunit. The disulfide bridges that were identified are an intersubunit Cys(384)-Cys(384), an intersubunit Cys(124)-Cys(124), an intersubunit Cys(384)-Cys(124), and an intrasubunit Cys(384)-Cys(124). The disulfide bridges between the B and C domain were observed with purified enzyme and confirmed by matrix-assisted laser desorption ionization-time of flight mass spectrometry. Mannitol did not influence the formation of the disulfide between Cys(384) and Cys(124). The close proximity of the two cysteines 124 was further confirmed with a separate C domain by oxidation with Cu(II)-(1,10-phenanthroline)(3) or by reactions with dimaleimides of different length. The data in combination with other work show that the first cytoplasmic loop around residue 124 is located at the dimer interface and involved in the interaction between the B and C domain.


Subject(s)
Cysteine , Escherichia coli/enzymology , Phosphoenolpyruvate Sugar Phosphotransferase System/chemistry , Phosphoenolpyruvate Sugar Phosphotransferase System/metabolism , Amino Acid Substitution , Binding Sites , Copper/pharmacology , Cross-Linking Reagents , Dimerization , Disulfides/analysis , Escherichia coli Proteins , Maleimides/pharmacology , Mannitol/metabolism , Monosaccharide Transport Proteins , Mutagenesis, Site-Directed , Oxidation-Reduction , Phenanthrolines/pharmacology , Phosphorylation , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
6.
Biochemistry ; 39(35): 10877-83, 2000 Sep 05.
Article in English | MEDLINE | ID: mdl-10978174

ABSTRACT

This paper presents a tryptophan phosphorescence spectroscopy study on the membrane-bound mannitol transporter, EII(mtl), from E. coli. The protein contains four tryptophans at positions 30, 42, 109, and 117. Phosphorescence decays in buffer at 1 degrees C revealed large variations of the triplet lifetimes of the wild-type protein and four single-tryptophan-containing mutants. They ranged from <70 microseconds for the tryptophan at position 109 to 55 ms for the residue at position 30, attesting to widely different flexibilities of the tryptophan microenvironments. The decay of all tryptophans is multiexponential, reflecting multiple stable conformations of the protein. Both mannitol binding and enzyme phosphorylation had large effects on the triplet lifetimes. Mannitol binding induces a more ordered structure near the mannitol binding site, and the decay becomes significantly more homogeneous. In contrast, enzyme phosphorylation induces a large relaxation of the protein structure at the reporter sites. The implications of these structural changes on the coupling mechanism between the transport and the phosphorylation activity of EII(mtl) are discussed. Taken as a whole, our data show that tryptophan phosphorescence spectroscopy is a very sensitive technique to explore conformational dynamics in membrane proteins.


Subject(s)
Carrier Proteins/chemistry , Membrane Proteins/chemistry , Phosphoenolpyruvate Sugar Phosphotransferase System/chemistry , Spectrometry, Fluorescence/methods , Tryptophan/chemistry , Binding Sites/genetics , Biological Transport/genetics , Carrier Proteins/genetics , Carrier Proteins/metabolism , Cysteine/chemistry , Cysteine/metabolism , Escherichia coli/enzymology , Escherichia coli/genetics , Escherichia coli Proteins , Freezing , Glass , Histidine/chemistry , Histidine/metabolism , Luminescent Measurements , Mannitol/chemistry , Mannitol/metabolism , Membrane Proteins/genetics , Membrane Proteins/metabolism , Monosaccharide Transport Proteins , Mutagenesis, Site-Directed , Phosphoenolpyruvate Sugar Phosphotransferase System/genetics , Phosphoenolpyruvate Sugar Phosphotransferase System/metabolism , Phosphorylation , Solutions , Thermodynamics , Tryptophan/genetics
7.
J Biol Chem ; 275(37): 28428-32, 2000 Sep 15.
Article in English | MEDLINE | ID: mdl-10829014

ABSTRACT

Hydrophobins function in fungal development by self-assembly at hydrophobic-hydrophilic interfaces such as the interface between the fungal cell wall and the air or a hydrophobic solid. These proteins contain eight conserved cysteine residues that form four disulfide bonds. To study the effect of the disulfide bridges on the self-assembly, the disulfides of the SC3 hydrophobin were reduced with 1,4-dithiothreitol. The free thiols were then blocked with either iodoacetic acid (IAA) or iodoacetamide (IAM), introducing eight or zero negative charges, respectively. Circular dichroism and infrared spectroscopy showed that after opening of the disulfide bridges SC3 is initially unfolded. IAA-SC3 did not self-assemble at the air-water interface upon shaking an aqueous solution. Remarkably, after drying down IAA-SC3 or after exposing it to Teflon, it refolded into a structure similar to that observed for native SC3 at these interfaces. Iodoacetamide-SC3 on the other hand, which does not contain extra charges, spontaneously refolded in water in the amyloid-like beta-sheet conformation, characteristic for SC3 assembled at the water-air interface. From this we conclude that the disulfide bridges of SC3 are not directly involved in self-assembly but keep hydrophobin monomers soluble in the fungal cell or its aqueous environment, preventing premature self-assembly.


Subject(s)
Fungal Proteins/chemistry , Amino Acid Sequence , Circular Dichroism , Disulfides/chemistry , Fungal Proteins/physiology , Molecular Sequence Data , Polytetrafluoroethylene/metabolism , Protein Conformation , Protein Structure, Secondary
8.
J Biol Chem ; 275(10): 7037-44, 2000 Mar 10.
Article in English | MEDLINE | ID: mdl-10702268

ABSTRACT

D-mannitol is taken up by Bacillus stearothermophilus and phosphorylated via a phosphoenolpyruvate-dependent phosphotransferase system (PTS). Transcription of the genes involved in mannitol uptake in this bacterium is regulated by the transcriptional regulator MtlR, a DNA-binding protein whose affinity for DNA is controlled by phosphorylation by the PTS proteins HPr and IICB(mtl). The mutational and biochemical studies presented in this report reveal that two domains of MtlR, PTS regulation domain (PRD)-I and PRD-II, are phosphorylated by HPr, whereas a third IIA-like domain is phosphorylated by IICB(mtl). An involvement of PRD-I and the IIA-like domain in a decrease in affinity of MtlR for DNA and of PRD-II in an increase in affinity is demonstrated by DNA footprint experiments using MtlR mutants. Since both PRD-I and PRD-II are phosphorylated by HPr, PRD-I needs to be dephosphorylated by IICB(mtl) and mannitol to obtain maximal affinity for DNA. This implies that a phosphoryl group can be transferred from HPr to IICB(mtl) via MtlR. Indeed, this transfer could be demonstrated by the phosphoenolpyruvate-dependent formation of [(3)H]mannitol phosphate in the absence of IIA(mtl). Phosphoryl transfer experiments using MtlR mutants revealed that PRD-I and PRD-II are dephosphorylated via the IIA-like domain. Complementation experiments using two mutants with no or low phosphoryl transfer activity showed that phosphoryl transfer between MtlR molecules is possible, indicating that MtlR-MtlR interactions take place. Phosphorylation of the same site by HPr and dephosphorylation by IICB(mtl) have not been described before; they could also play a role in other PRD-containing proteins.


Subject(s)
Bacterial Proteins , Escherichia coli Proteins , Geobacillus stearothermophilus/metabolism , Glycosyltransferases/metabolism , Phosphoenolpyruvate/pharmacology , Repressor Proteins/physiology , Amino Acid Sequence , Base Sequence , DNA/metabolism , Molecular Sequence Data , Monosaccharide Transport Proteins , Phosphoenolpyruvate Sugar Phosphotransferase System/physiology , Phosphorylation
9.
Biochemistry ; 38(31): 9798-803, 1999 Aug 03.
Article in English | MEDLINE | ID: mdl-10433685

ABSTRACT

This paper presents a deceptively straightforward experimental approach to monitoring membrane protein-ligand interactions in vesicles and in living Escherichia coli cells. This is achieved via the biosynthetic incorporation of 7-azatryptophan, a tryptophan analogue with a red-shifted absorption spectrum, allowing collection of the emission signal of the target protein in a high tryptophan background via red-edge excitation. The approach is demonstrated for the mannitol permease of E. coli (EII(mtl)), an integral membrane protein of 637 amino acids, including four tryptophans, and single-tryptophan mutants of EII(mtl). By using a tryptophan auxotroph, a high level of 7-azatryptophan incorporation in EII(mtl) was achieved. The change in emission signal of the purified enzyme upon mannitol binding (-28%) was 4-fold larger than with EII(mtl) containing tryptophan, demonstrating the known higher sensitivity of this analogue for changes in the microenvironment [Schlesinger, R. (1968) J. Biol. Chem. 243, 3877-3883]. Changes in emission signal could also be monitored (-5%) when the enzyme was situated in vesicles, although it constituted only 10-15% of the total cytoplasmic membrane fraction. Of the five single-tryptophan mutants, the emission signal of the mutant with 7-azatryptophan at position 198 was the most sensitive for mannitol binding. Changes in emission signal not only were observed in vesicles (-18%) but also could be monitored in viable cells (-5%). The fact that only modest expression levels and no protein purification are needed makes this a useful approach for the characterization of numerous protein systems under in vitro and in vivo conditions.


Subject(s)
Escherichia coli/metabolism , Membrane Proteins/metabolism , Tryptophan/analogs & derivatives , Binding Sites , Cell Membrane/chemistry , Cell Membrane/metabolism , Cytoplasm/chemistry , Cytoplasm/metabolism , Escherichia coli/genetics , Escherichia coli/growth & development , Ligands , Mannitol/metabolism , Membrane Proteins/biosynthesis , Membrane Proteins/genetics , Mutagenesis, Site-Directed , Periplasm/chemistry , Periplasm/metabolism , Spectrometry, Fluorescence , Tryptophan/biosynthesis , Tryptophan/genetics , Tryptophan/metabolism
11.
J Mol Biol ; 287(5): 845-51, 1999 Apr 16.
Article in English | MEDLINE | ID: mdl-10222194

ABSTRACT

The uptake of mannitol in Escherichia coli is controlled by the phosphoenolpyruvate dependent phosphotransferase system. Enzyme II mannitol (EIIMtl) is part of the phosphotransferase system and consists of three covalently bound domains. IICMtl, the integral membrane domain of EIIMtl, is responsible for mannitol transport across the cytoplasmic membrane. In order to understand this molecular process, two-dimensional crystals of IICMtl were grown by reconstitution into lipid bilayers and their structure was investigated by cryo-electron crystallography. The IICMtl crystals obey p22121 symmetry and have a unit cell of 125 Ax65 A, gamma=90 degrees. A projection structure was determined at 5 A resolution using both electron images and electron diffractograms. The unit cell contains two IICMtl dimers with a size of about 40 Ax90 A, which are oriented up and down in the crystal. Each monomer exhibits six domains of high density which most likely correspond to transmembrane alpha-helices and cytoplasmic loops.


Subject(s)
Crystallography/methods , Phosphoenolpyruvate Sugar Phosphotransferase System/chemistry , Cell Membrane , Crystallization , Escherichia coli Proteins , Freezing , Lipid Bilayers , Monosaccharide Transport Proteins , Protein Conformation
12.
J Biol Chem ; 274(8): 4754-63, 1999 Feb 19.
Article in English | MEDLINE | ID: mdl-9988713

ABSTRACT

D-Mannitol is taken up by Bacillus stearothermophilus and phosphorylated via a phosphoenolpyruvate-dependent phosphotransferase system (PTS). The genes involved in the mannitol uptake were recently cloned and sequenced. One of the genes codes for a putative transcriptional regulator, MtlR. The presence of a DNA binding helix-turn-helix motif and two antiterminator-like PTS regulation domains, suggest that MtlR is a DNA-binding protein, the activity of which can be regulated by phosphorylation by components of the PTS. To demonstrate DNA binding of MtlR to a region upstream of the mannitol promoter, by DNA footprinting, MtlR was overproduced and purified. EI, HPr, IIAmtl, and IICBmtl of B. stearothermophilus were purified and used to demonstrate that MtlR can be phosphorylated and regulated by HPr and IICBmtl, in vitro. Phosphorylation of MtlR by HPr increases the affinity of MtlR for its binding site, whereas phosphorylation by IICBmtl results in a reduction of this affinity. The differential effect of phosphorylation, by two different proteins, on the DNA binding properties of a bacterial transcriptional regulator has not, to our knowledge, been described before. Regulation of MtlR by two components of the PTS is an example of an elegant control system sensing both the presence of mannitol and the need to utilize this substrate.


Subject(s)
DNA-Binding Proteins/metabolism , Escherichia coli Proteins , Geobacillus stearothermophilus/metabolism , Mannitol/metabolism , Phosphoenolpyruvate Sugar Phosphotransferase System/metabolism , Repressor Proteins/metabolism , Bacterial Proteins/isolation & purification , Bacterial Proteins/metabolism , Base Sequence , DNA Primers , DNA-Binding Proteins/isolation & purification , Geobacillus stearothermophilus/genetics , Monosaccharide Transport Proteins , Operon , Phosphoenolpyruvate Sugar Phosphotransferase System/isolation & purification , Phosphorylation , Protein Binding , Repressor Proteins/isolation & purification , Transcription, Genetic
14.
J Biol Chem ; 273(33): 20785-94, 1998 Aug 14.
Article in English | MEDLINE | ID: mdl-9694823

ABSTRACT

The thermal stability and domain interactions in the mannitol transporter from Escherichia coli, enzyme IImtl, have been studied by differential scanning calorimetry. To this end, the wild type enzyme, IICBAmtl, as well as IICBmtl and IICmtl, were reconstituted into a dimyristoylphosphatidylcholine lipid bilayer. The changes in the gel to liquid crystalline transition of the lipid indicated that the protein was inserted into the membrane, disturbing a total of approximately 40 lipid molecules/protein molecule. The thermal unfolding profile of EIImtl exhibited three separate transitions, two of which were overlapping, that could be assigned to structural domains in the protein. Treatment with trypsin, resulting in the degradation of the water-soluble part of the enzyme while leaving the binding and translocation capability of the enzyme intact, resulted in a decrease of the Tm and enthalpy of unfolding of the membrane-embedded C domain. This effect was much more apparent in the presence of the substrate but only partly so in the presence of the substrate analog perseitol. These results are consistent with a recently proposed model (Meijberg, W., Schuurman-Wolters, G. K., and Robillard, G. T. (1998) J. Biol. Chem. 273, 7949-7946), in which the B domain takes part in the conformational changes during the substrate binding process.


Subject(s)
Escherichia coli/enzymology , Phosphoenolpyruvate Sugar Phosphotransferase System/metabolism , Base Sequence , Calorimetry, Differential Scanning , DNA Primers , Enzyme Stability , Escherichia coli Proteins , Mannitol/chemistry , Models, Chemical , Monosaccharide Transport Proteins , Phosphoenolpyruvate Sugar Phosphotransferase System/chemistry , Phosphorylation , Protein Conformation , Protein Folding , Substrate Specificity
15.
J Biol Chem ; 273(14): 7949-56, 1998 Apr 03.
Article in English | MEDLINE | ID: mdl-9525892

ABSTRACT

The transport across the cytoplasmic membrane and concomitant phosphorylation of mannitol in Escherichia coli is catalyzed by the mannitol-specific transport protein from the phosphoenolpyruvate-dependent phosphotransferase system, enzyme IImtl. Interactions between the cytoplasmic B and the membrane embedded C domain play an important role in the catalytic cycle of this enzyme, but the nature of this interaction is largely unknown. We have studied the thermodynamics of binding of (i) mannitol to enzyme IImtl, (ii) the substrate analog perseitol to enzyme IImtl, (iii) perseitol to phosphorylated enzyme IImtl, and (iv) mannitol to enzyme IImtl treated with trypsin to eliminate the cytoplasmic domains. Analysis of the heat capacity increment of these reactions showed that approximately 50-60 residues are involved in the binding of mannitol and perseitol, but far less in the phosphorylated state or after removal of the B domain. A model is proposed in which binding of mannitol leads to the formation of a contact interface between the two domains, either by folding of unstructured parts or by docking of preexisting surfaces, thus positioning the incoming mannitol close to the phosphorylation site on the B domain to facilitate the transfer of the phosphoryl group.


Subject(s)
Escherichia coli/enzymology , Phosphoenolpyruvate Sugar Phosphotransferase System/chemistry , Protein Conformation , Escherichia coli/chemistry , Escherichia coli Proteins , Monosaccharide Transport Proteins , Thermodynamics
16.
Structure ; 6(3): 377-88, 1998 Mar 15.
Article in English | MEDLINE | ID: mdl-9551558

ABSTRACT

BACKGROUND: The bacterial phosphoenolpyruvate-dependent phosphotransferase system (PTS) catalyses the cellular uptake and subsequent phosphorylation of carbohydrates. Moreover, the PTS plays a crucial role in the global regulation of various metabolic pathways. The PTS consists of two general proteins, enzyme I and the histidine-containing protein (HPr), and the carbohydrate-specific enzyme II (EII). EIIs are usually composed of two cytoplasmic domains, IIA and IIB, and a transmembrane domain, IIC. The IIA domains catalyse the transfer of a phosphoryl group from HPr to IIB, which phosphorylates the transported carbohydrate. Knowledge of the structures of the IIA proteins may provide insight into the mechanisms by which the PTS couples phosphorylation reactions with carbohydrate specificity. RESULTS: We have determined the crystal structure of the Escherichia coli mannitol-specific IIA domain, IIAmtl (M(r) 16.3 kDa), by multiple anomalous dispersion analysis of a selenomethionine variant of IIAmtl. The structure was refined at 1.8 A resolution to an R factor of 19.0% (Rfree 24.2%). The enzyme consists of a single five-stranded mixed beta sheet, flanked by helices on both sides. The phosphorylation site (His65) is located at the end of the third beta strand, in a shallow crevice lined with hydrophobic residues. The sidechains of two conserved active-site residues, Arg49 and His111, adopt two different conformations in the four independent IIAmtl molecules. Using a solution structure of phosphorylated HPr, and a combination of molecular modelling and NMR binding experiments, structural models of the HPr-IIAmtl complex were generated. CONCLUSIONS: The fold of IIAmtl is completely different from the structures of other IIA proteins determined so far. The two conformations of Arg49 and His111 might represent different states of the active site, required for the different phosphoryl transfer reactions in which IIAmtl is involved. A comparison of the HPr-IIAmtl model with models of HPr in complex with other IIA enzymes shows that the overall interaction mode between the two proteins is similar. Differences in the stabilisation of the invariant residue Arg17 of HPr by the different IIA proteins might be part of a subtle mechanism to control the hierarchy of carbohydrate utilisation by the bacterium.


Subject(s)
Bacterial Proteins , Escherichia coli/enzymology , Phosphoenolpyruvate Sugar Phosphotransferase System/chemistry , Phosphoenolpyruvate Sugar Phosphotransferase System/metabolism , Binding Sites , Crystallography, X-Ray , Escherichia coli Proteins , Histidine/metabolism , Models, Molecular , Monosaccharide Transport Proteins , Phosphorylation , Phosphotransferases/chemistry , Phosphotransferases/metabolism , Protein Conformation , Protein Folding
17.
Biophys J ; 74(4): 2059-68, 1998 Apr.
Article in English | MEDLINE | ID: mdl-9545064

ABSTRACT

Hydrophobins are small fungal proteins that self-assemble at hydrophilic/hydrophobic interfaces into amphipathic membranes that, in the case of Class I hydrophobins, can be disassembled only by treatment with agents like pure trifluoroacetic acid. Here we characterize, by spectroscopic techniques, the structural changes that occur upon assembly at an air/water interface and upon assembly on a hydrophobic solid surface, and the influence of deglycosylation on these events. We determined that the hydrophobin SC3 from Schizophyllum commune contains 16-22 O-linked mannose residues, probably attached to the N-terminal part of the peptide chain. Scanning force microscopy revealed that SC3 adsorbs specifically to a hydrophobic surface and cannot be removed by heating at 100 degrees C in 2% sodium dodecyl sulfate. Attenuated total reflection Fourier transform infrared spectroscopy and circular dichroism spectroscopy revealed that the monomeric, water-soluble form of the protein is rich in beta-sheet structure and that the amount of beta-sheet is increased after self-assembly on a water-air interface. Alpha-helix is induced specifically upon assembly of the protein on a hydrophobic solid. We propose a model for the formation of rodlets, which may be induced by dehydration and a conformational change of the glycosylated part of the protein, resulting in the formation of an amphipathic alpha-helix that forms an anchor for binding to a substrate. The assembly in the beta-sheet form seems to be involved in lowering of the surface tension, a potential function of hydrophobins.


Subject(s)
Fungal Proteins/chemistry , Adsorption , Air , Biophysical Phenomena , Biophysics , Circular Dichroism , Glycosylation , Mannose/chemistry , Microscopy, Atomic Force , Models, Molecular , Protein Conformation , Protein Structure, Secondary , Schizophyllum/chemistry , Spectroscopy, Fourier Transform Infrared , Surface Tension , Water
18.
J Biol Chem ; 273(7): 3865-70, 1998 Feb 13.
Article in English | MEDLINE | ID: mdl-9461568

ABSTRACT

This paper reports that the aggregation state of a membrane protein can be changed reversibly without the use of chaotropic agents or denaturants by altering the attractive interactions between micelles of polyethylene glycol-based detergents. This has been documented using mannitol permease of Escherichia coli (EIImtl), a protein whose activity is dependent on the dimerization of its membrane-embedded domains. We show that the driving force for the hydrophobic interactions responsible for the dimerization can be decreased by bringing the protein into a less polar environment. This can be done simply and reversibly by increasing the micelle cluster size of the solubilizing detergent since the micropolarity in the micelle decreases upon clustering and is directly related to the cluster size. The micelle cluster size was varied at a fixed temperature by adding sodium phosphate or a second detergent with a distinct clustering behavior, and the changes were quantified by quasi-elastic light scattering and by determining the cloud point or demixing temperature (Td) of the detergent. Maximal EIImtl activity was found when no micelle clustering occurred, but the activity gradually decreased down to 5% of the maximal activity with increasing cluster size. The inactivation was found to be completely reversible. The kinetics of heterodimer formation were also significantly affected by changes in the micelle cluster size as expected. Increasing the cluster size resulted in faster formation of functional heterodimers by increasing the rate of homodimer dissociation. This phenomenon should be generally applicable to controlling the oligomeric state of membrane-bound proteins or even water-soluble proteins if their subunit association is dominated by hydrophobic forces.


Subject(s)
Escherichia coli/chemistry , Membrane Proteins/metabolism , Phosphoenolpyruvate Sugar Phosphotransferase System/chemistry , Protein Conformation/drug effects , Bacterial Proteins/metabolism , Detergents/pharmacology , Dimerization , Escherichia coli Proteins , Kinetics , Micelles , Monosaccharide Transport Proteins , Particle Size , Phosphoenolpyruvate/metabolism , Phosphoenolpyruvate Sugar Phosphotransferase System/metabolism , Phosphorylation , Polyethylene Glycols/pharmacology , Scattering, Radiation
19.
Biochemistry ; 37(2): 622-37, 1998 Jan 13.
Article in English | MEDLINE | ID: mdl-9425085

ABSTRACT

The folding of an 85-residue protein, the histidine-containing phosphocarrier protein HPr, has been studied using a variety of techniques including DSC, CD, ANS fluorescence, and NMR spectroscopy. In both kinetic and equilibrium experiments the unfolding of HPr can be adequately described as a two-state process which does not involve the accumulation of intermediates. Thermodynamic characterization of the native and the transition states has been achieved from both equilibrium and kinetic experiments. The heat capacity change from the denatured state to the transition state (3. 2 kJ mol-1 K-1) is half of the heat capacity difference between the native and denatured states (6.3 kJ mol-1 K-1), while the solvent accessibility of the transition state (0.36) indicates that its compactness is closer to that of the native than that of the denatured state. The high value for the change in heat capacity upon unfolding results in the observation of cold denaturation at moderate denaturant concentrations. Refolding from high denaturant concentrations is, however, slow. The rate constant of folding in water, (14.9 s-1), is small compared to that reported for other proteins of similar size under similar conditions. This indicates that very fast refolding is not a universal character of small globular proteins which fold in the absence of detectable intermediates.


Subject(s)
Bacterial Proteins/chemistry , Phosphoenolpyruvate Sugar Phosphotransferase System/chemistry , Protein Folding , Calorimetry, Differential Scanning , Circular Dichroism , Guanidine , Kinetics , Models, Chemical , Protein Denaturation , Species Specificity , Temperature , Thermodynamics
20.
Biochemistry ; 36(16): 4860-6, 1997 Apr 22.
Article in English | MEDLINE | ID: mdl-9125506

ABSTRACT

The effects of substrate and substrate analogue binding and phosphorylation on the conformational dynamics of the mannitol permease of Escherichia coli were investigated, using time-resolved fluorescence spectroscopy on mutants containing five single tryptophans situated in the membrane-embedded C domain of the enzyme [Swaving Dijkstra et al. (1996) Biochemistry 35, 6628-6634]. Since no fluorescent impurities are present in these mutants, the changes in fluorescence and anisotropy could be related with changes in the tryptophan microenvironment. Tryptophans at positions 30 and 42 showed changes in fluorescence intensity decay upon binding mannitol, which were reflected in the changes in lifetime distribution patterns. The disappearance of the shortest-lived decay component in these mutants, as well as in the mutant with a single tryptophan at position 109, indicates a change in the local environment such that quenching via neighboring side chains or solvent is reduced. Phosphorylation at histidine 554 and cysteine 384, located in the cytoplasmatic A and B domains of EII(mtl), respectively, induced an increase in the average fluorescence lifetimes of all of the tryptophans. The effect was most pronounced for tryptophans 30 and 109 which show large increases in the average fluorescence lifetime mainly due to loss of short-lived decay components. A correlation time distribution of the individual tryptophans deduced from an analysis of the anisotropy decay showed that they differed in their rotational mobility with tryptophan 30 showing the least local flexibility. Phosphorylation resulted in immobilization of W109 which, together with changes in the average fluorescence lifetime, is evidence for a conformational coupling between the phosphorylated B domain and the C domain. The influence of mannitol binding on the rotational behavior of the tryptophans is limited; it induces more internal flexibility at all tryptophan positions. A rotational correlation time of 30 ns was resolved for tryptophan 30, which probably represents a rotational mode of the micelle-embedded C-domain of EII(mtl) or a portion thereof. Upon phosphorylation, this rotational correlation time increases to 50 ns, probably reflecting a changed spatial orientation of W30 with respect to the C domain. Although kinetic experiments have shown that none of the tryptophans is essential for the catalytic activity of EII(mtl), it is significant that the residues most sensitive to mannitol binding, W30 and W42, are both located in the first membrane-spanning alpha-helix, a portion of which is highly conserved among mannitol-specific EII's of different bacteria.


Subject(s)
Phosphoenolpyruvate Sugar Phosphotransferase System/chemistry , Tryptophan/chemistry , Detergents , Escherichia coli Proteins , Fluorescence Polarization , Heptoses/metabolism , Iodides/metabolism , Mannitol/metabolism , Micelles , Monosaccharide Transport Proteins , Phosphoenolpyruvate Sugar Phosphotransferase System/genetics , Phosphoenolpyruvate Sugar Phosphotransferase System/metabolism , Phosphorylation , Point Mutation , Protein Binding , Spectrometry, Fluorescence , Tryptophan/genetics , Tryptophan/metabolism
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